TCONS_00056539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056539
Unique NameTCONS_00056539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056539 ID=TCONS_00056539|Name=TCONS_00056539|organism=Clytia hemisphaerica|type=transcript|length=640bp
tatTAACCCATGAGCATTAGATAGATGCTCATTTTATGTTCACAACAAAA
NATTTTGAACTATTTTTACACTTGATTTAATTACCtcctttcttcatttt
tgatatGAATCCTGATGAATCGGTAAATGACGCTGTTACTGTTGAAACTT
GTTTCAAACCTGCCAATCCTGTGATTTCTGGTTTATATTGATTATCATCA
CTACGCTTGCCAAAGAACCAGTACAAAAGAAAACCAACAAAGGAAAGCAA
AACGAGAATGTCGAGCGAACCTAACATAAAAGCATCTCCGCTCTCAGCTA
TAGCTTCTTCAGTTTCAgtcatctttttttttaactttatataATCTAAA
ATCAGGTTGATCATATTATTAATTAAGTGAAATCATCAGCTGCAAGTCAG
AGCTATCAATTATCAATTATAAAACAGAAATAAGTGCAGCGATCTAATTC
AAAACTGACTTTTGGTTGATTGTGACCCTTTCAAAAGGAAAACTCAGCCA
ACCTTTGATTTCAGTCTTCAAGCTTAAGAGGGGGTTAATCTAAAGAATTc
tacatttactaaaaatagacaaaaaagaatgataaaatttcataaacaac
gaTAAATTTCACAGTCCACAACCCCAACCCAGCTAGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_276:286972..287611

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056539 ID=TCONS_00056539|Name=TCONS_00056539|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at scaffold_276:286972..287611 (Clytia hemisphaerica)
CAAACTAGCTGGGTTGGGGTTGTGGACTGTGAAATTTAtcgttgtttatg aaattttatcattcttttttgtctatttttagtaaatgtagAATTCTTTA GATTAACCCCCTCTTAAGCTTGAAGACTGAAATCAAAGGTTGGCTGAGTT TTCCTTTTGAAAGGGTCACAATCAACCAAAAGTCAGTTTTGAATTAGATC GCTGCACTTATTTCTGTTTTATAATTGATAATTGATAGCTCTGACTTGCA GCTGATGATTTCACTTAATTAATAATATGATCAACCTGATTTTAGATtat ataaagttaaaaaaaaagatgacTGAAACTGAAGAAGCTATAGCTGAGAG CGGAGATGCTTTTATGTTAGGTTCGCTCGACATTCTCGTTTTGCTTTCCT TTGTTGGTTTTCTTTTGTACTGGTTCTTTGGCAAGCGTAGTGATGATAAT CAATATAAACCAGAAATCACAGGATTGGCAGGTTTGAAACAAGTTTCAAC AGTAACAGCGTCATTTACCGATTCATCAGGATTCatatcaaaaatgaaga aaggaGGTAATTAAATCAAGTGTAAAAATAGTTCAAAATNTTTTGTTGTG AACATAAAATGAGCATCTATCTAATGCTCATGGGTTAata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035619XLOC_035619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056539-exon-scaffold_276-1491911889:286972..287611TCONS_00056539-exon-scaffold_276-1491911889:286972..287611Clytia hemisphaericaexon
TCONS_00056539-exon-scaffold_276-1510915933:286972..287611TCONS_00056539-exon-scaffold_276-1510915933:286972..287611Clytia hemisphaericaexon
TCONS_00056539-exon-scaffold_276-1575043694:286972..287611TCONS_00056539-exon-scaffold_276-1575043694:286972..287611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:286972..287611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (6.45028 tpm) - - (49.7308 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.8077 6.58214 11.6502 14.954 49.7308 43.4207 21.5891 28.732 19.561 19.8475 19.6815 12.4993 11.2227 7.73205 6.45028 10.0822 10.8139 9.31045 7.00021 9.70591 7.32198 10.4813 12.4583 12.0128 11.4891 10.6481 13.5444 9.7571 16.6281 13.218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
back to top