TCONS_00056539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056539
Unique NameTCONS_00056539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056539 ID=TCONS_00056539|Name=TCONS_00056539|organism=Clytia hemisphaerica|type=transcript|length=640bp
tatTAACCCATGAGCATTAGATAGATGCTCATTTTATGTTCACAACAAAA
NATTTTGAACTATTTTTACACTTGATTTAATTACCtcctttcttcatttt
tgatatGAATCCTGATGAATCGGTAAATGACGCTGTTACTGTTGAAACTT
GTTTCAAACCTGCCAATCCTGTGATTTCTGGTTTATATTGATTATCATCA
CTACGCTTGCCAAAGAACCAGTACAAAAGAAAACCAACAAAGGAAAGCAA
AACGAGAATGTCGAGCGAACCTAACATAAAAGCATCTCCGCTCTCAGCTA
TAGCTTCTTCAGTTTCAgtcatctttttttttaactttatataATCTAAA
ATCAGGTTGATCATATTATTAATTAAGTGAAATCATCAGCTGCAAGTCAG
AGCTATCAATTATCAATTATAAAACAGAAATAAGTGCAGCGATCTAATTC
AAAACTGACTTTTGGTTGATTGTGACCCTTTCAAAAGGAAAACTCAGCCA
ACCTTTGATTTCAGTCTTCAAGCTTAAGAGGGGGTTAATCTAAAGAATTc
tacatttactaaaaatagacaaaaaagaatgataaaatttcataaacaac
gaTAAATTTCACAGTCCACAACCCCAACCCAGCTAGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_276:286972..287611

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056539 ID=TCONS_00056539|Name=TCONS_00056539|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at scaffold_276:286972..287611 (Clytia hemisphaerica)
CAAACTAGCTGGGTTGGGGTTGTGGACTGTGAAATTTAtcgttgtttatg
aaattttatcattcttttttgtctatttttagtaaatgtagAATTCTTTA
GATTAACCCCCTCTTAAGCTTGAAGACTGAAATCAAAGGTTGGCTGAGTT
TTCCTTTTGAAAGGGTCACAATCAACCAAAAGTCAGTTTTGAATTAGATC
GCTGCACTTATTTCTGTTTTATAATTGATAATTGATAGCTCTGACTTGCA
GCTGATGATTTCACTTAATTAATAATATGATCAACCTGATTTTAGATtat
ataaagttaaaaaaaaagatgacTGAAACTGAAGAAGCTATAGCTGAGAG
CGGAGATGCTTTTATGTTAGGTTCGCTCGACATTCTCGTTTTGCTTTCCT
TTGTTGGTTTTCTTTTGTACTGGTTCTTTGGCAAGCGTAGTGATGATAAT
CAATATAAACCAGAAATCACAGGATTGGCAGGTTTGAAACAAGTTTCAAC
AGTAACAGCGTCATTTACCGATTCATCAGGATTCatatcaaaaatgaaga
aaggaGGTAATTAAATCAAGTGTAAAAATAGTTCAAAATNTTTTGTTGTG
AACATAAAATGAGCATCTATCTAATGCTCATGGGTTAata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035619XLOC_035619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056539-exon-scaffold_276-1491911889:286972..287611TCONS_00056539-exon-scaffold_276-1491911889:286972..287611Clytia hemisphaericaexon
TCONS_00056539-exon-scaffold_276-1510915933:286972..287611TCONS_00056539-exon-scaffold_276-1510915933:286972..287611Clytia hemisphaericaexon
TCONS_00056539-exon-scaffold_276-1575043694:286972..287611TCONS_00056539-exon-scaffold_276-1575043694:286972..287611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:286972..287611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.8077	6.58214	11.6502	14.954	49.7308	43.4207	21.5891	28.732	19.561	19.8475	19.6815	12.4993	11.2227	7.73205	6.45028	10.0822	10.8139	9.31045	7.00021	9.70591	7.32198	10.4813	12.4583	12.0128	11.4891	10.6481	13.5444	9.7571	16.6281	13.218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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