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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056572 ID=TCONS_00056572|Name=TCONS_00056572|organism=Clytia hemisphaerica|type=transcript|length=1409bp
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
ATAGCGAAAGAGTGGTTAAGAAGGATGGACAATCAGCTTTTGATGAAGAG
CGCATGCATGGGCCGACAGAGAAAGAAGCAGTGCTCGATCAAGGAGTTGT
TATGAAGGATGGACAATCAGCTTTTGATGAAGAGCAAATGCGTGGTCCAC
CAGAAAAAGAAGCAGTTCTTGATCAATTTATGGATAAAAGAAAGATTACT
AGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATCAATTAGAGGA
TGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAActcgaaaaaa
gaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCAAGCGATGAACT
CGAAAAAATAAATTGGCCAAGACCTGGCGATGAActcgaaaaaagaaatt
ggcCAAGACCTGGCGATGAACTCGAAAAAAGAAATCGGCCAAGACCTGGT
GATGAACTAGAAAAAGGAAATCGGCCAAGACCTGGTGATGAACTAGAAAA
AGGAAATTGGCCAAGACCAGGCGATAAACCCGAAAAAAATCATGATTATC
TTGGATAGCATAATGATTTAGTGCAATGATCTACGCCATATATATACCCG
GTCTCGAACTGGGTTCTGGgtcaacttttttgaaaatttgtgtttttaac
ATTAATAATGTAACTTGTCCTTTGTTGTTTGTCTTtttacaatgctggac
aaaaggtttgtagacttctgcaatatttgcaaaatacttcaatatcgatc
aaaaacaagttcccaagaggctctgggtgctttccaaacctatccaaagt
ctttcaaagtctttcaaagtcttttttacttgtttgttttgtctgttGTT
TAACCTTTTTGTGGTCTTGACTTGGTACGAGtatgtttctttgtatttgt
gtgcgAGTCTATGCATCTTTGttatgtttgttagtttgtttggtccaggg
ttatggaatctaggggaggctgagtgttggacgtccttaaaacatgtCTA
AAGCCGCTGCACCTGTCGCAAGTTGGGGACGCGTCGGGGACTCTAGATTA
CATTATATTTTTGTTGGgctttttggtagtttttagtGTTTATATTTTTG
TGATTGTTGTGTTTATGTTTCTGCTtagctttttaaactttatatctatt
gttttgttggttaactctttttttcgcataaaattctcatttcttgacat
aatatttgattggtttgatttatatatttagaaaaattcaaataaataat
agaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_277:192109..195991+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056572 ID=TCONS_00056572|Name=TCONS_00056572|organism=Clytia hemisphaerica|type=transcript|length=3883bp|location=Sequence derived from alignment at scaffold_277:192109..195991+ (Clytia hemisphaerica)
atttcaGTAAGGATCGCCAAGATGTCATCATCAATGTTGATCTTGGTAAC
GTTAATATGCACCGCAACACTTTCTATTGCATATCCCTTCAATCATAAAG
TATGTATTATAGTTGACGATCAAAAACAAGAATATCCCAGTAAATTTAAC
CTAATTACAGATGGtcataatttttcttaaaggttttgttttttaaataa
gagtgatatcgtttgcttactcatcacttttaattcacaagctttttcac
attgaattgacacggatgatcggatgtggagcaagattggtcaaaaaaag
GAGAAGAAAAGTACTTTTTTGTATAtgtcagcacaatataacaaaaggta
gacactgtcctgatatgaaatatgtgtctgatatgaaacgggaacactta
tgtaaaaatgaaacctttaagCACACGGTAAACCTCTGTACCTCTGTATA
AAGCActgatttataaagcccaaatggctagatggcgtgctttagctgaa
aagtgtgccgtggttaggtaggaaatcctacctaagtcacgtgacattac
attAGAATTTTAGCGCTTGACCAATAGAAACtacgcgggttttcgaaaaa
caatagcaacaatttGCTTTGCTAAAAGCGCAacttacagaaatctgtgg
cgcttgaaaattatccATCTGAGGAATATAGCCACTTTCATAACAAGAAT
CTTATGACGTGCCACGATCTTTTTTCTGATACGGTGAACTATTTTCCGAT
ACAATCACGCAATtctgttgtcattcccagtcctttgaAACGAGCACGGT
CCTTACGAACCCAAGATGGCATATTTGTCAGATCgcttgttttcacacat
ccctttagaacTTTAGCGTTGTTTgcagaaaacaatgaaaatctatctga
tctcaggttaactAAATTTTACTCACAAGTACCTAAAAACTGTCACATAA
CTTGAAATTTAGTCTTTTCACCAAACTGGATCCGCTTATTAAATTATACT
AAGAGCATAAATTGCATCCaagaattattttaaagtttATGTCAAGTATA
TTTGGGTACACTCACTgagtagtctgaatcgcagacctctatagaaatac
ttctataagaaacttttttcgctagaggatgagcagaagcctactcATTG
AGGTATCAAGATCACATCGACAGGACTAGATATAATTTTACTTGCACACC
AGAGATGTAAAGCCATTTGCCTTTAGGCAAAGTTTTAacactacaatgac
ttctttgcgggcaataattacaaaaaaactccgatcaaagatggcggata
tagcttcgTCCAAGGTCGATAAAGGTTAGTAGGTATAATTTACAGATGAT
CTTTTTAATTCTCATAGGATAGCGAAAGAGTGGTTAAGAAGGATGGACAA
TCAGCTTTTGATGAAGAGCGCATGCATGGGCCGACAGAGAAAGAAGCAGT
GCTCGATCAAGGAGTTGTTATGAAGGATGGACAATCAGCTTTTGATGAAG
AGCAAATGCGTGGTCCACCAGAAAAAGAAGCAGTTCTTGATCAATTTATG
GTGAGCTTTCTTTAAGCTATTTGTTTAACTATAATAAATActgaaaaatg
tcaatatgtTTCTGGCTTAATTTTTTTAGGCAGCTGGCATCCACTAAAAG
ATTCGTACTCCTTATCGTACCTATAGTACTTGAACTACCTGCTATTTTGT
CCTATCCAGATACACTCGTTTTTATAactaaaggcttcaaaaatgccaaa
aaatgctaaaaaataagaactAATGAGCATGGAATTTCTGTTAGTAATTA
GTAATTTGTATAAAGCACCAAATACCTGTATTTTGCCCTCTACTTAAAAA
AATGAATCCTTTTacaatcaaaaatctttttcctcCACATAGGATAAAAG
AAAGATTACTAGTCAACAAGAGCCACCAGAGAAAGAAGCAGTGCTCGATC
AATTAGAGGTGAGATTAttttaagccccccccccccccctccccccaaaa
aaaaaaaaaaatccccaTTAATTAGAGGTTGGGTTTttttaagccccccc
cccccctcatctgcgaaaagaaataaatttttacaaaatcagCTTTTCGT
CCTTGAAAGCTCTTTTCCAAATTATAAatagtctgtacacagacccgata
tctacgtctaatttcaaaattcattgccgtagaggatCTGTTTattattg
tcttttctcatttgagatttttcaaaccgacagCTGCGATGGAGTGCGGG
TGAGAGAAGAGAGATAATAGGAGGGGTGTTTGAAATCTtctagacttaaa
actttccctCTACAGGGGCTTTCATTCTTtccaatattttgatttattgt
TTAGGATGCGTTTAAAGTCGGAAATTGGCAAAGAATTGGCGATGAActcg
aaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaattgg
cCAAGACCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGA
TgaactcgaaaaaaaaaattggccaagACCAGGCGATGaactagaaaaaa
gaaattggctAAGGCCAGGCGATGAattcgaaaaaagaaattggcCAAGA
CCTGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAAct
cgaaaaaagaaattggcCAAGGCCAGGCGATGAActcgaaaaaagaaatt
ggcCAAGACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGC
GATGaactagaaaaaagaaattggccAAGACCTGGTGATGAActcgaaaa
aagaaattggcCAAGGCCAGGCGATGAACTCGAAAGAAGAAATTGGCCAA
GACCAGGCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAA
ctcgaaaaaagaaattggcCAAGACCTGGCGATGAActcgaaaaaagaaa
ttggcCAAGACCAAGCGATGAACTCGAAAAAATAAATTGGCCAAGACCTG
GCGATGAActcgaaaaaagaaattggcCAAGACCTGGCGATGAACTCGAA
AAAAGAAATCGGCCAAGACCTGGTGATGAACTAGAAAAAGGAAATCGGCC
AAGACCTGGTGATGAACTAGAAAAAGGAAATTGGCCAAGACCAGGCGATA
AACCCGAAAAAAATCATGATTATCTTGGATAGCATAATGATTTAGTGCAA
TGATCTACGCCATATATATACCCGGTCTCGAACTGGGTTCTGGgtcaact
tttttgaaaatttgtgtttttaacATTAATAATGTAACTTGTCCTTTGTT
GTTTGTCTTtttacaatgctggacaaaaggtttgtagacttctgcaatat
ttgcaaaatacttcaatatcgatcaaaaacaagttcccaagaggctctgg
gtgctttccaaacctatccaaagtctttcaaagtctttcaaagtcttttt
tacttgtttgttttgtctgttGTTTAACCTTTTTGTGGTCTTGACTTGGT
ACGAGtatgtttctttgtatttgtgtgcgAGTCTATGCATCTTTGttatg
tttgttagtttgtttggtccagggttatggaatctaggggaggctgagtg
ttggacgtccttaaaacatgtCTAAAGCCGCTGCACCTGTCGCAAGTTGG
GGACGCGTCGGGGACTCTAGATTACATTATATTTTTGTTGGgctttttgg
tagtttttagtGTTTATATTTTTGTGATTGTTGTGTTTATGTTTCTGCTt
agctttttaaactttatatctattgttttgttggttaactctttttttcg
cataaaattctcatttcttgacataatatttgattggtttgatttatata
tttagaaaaattcaaataaataatagaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056572-exon-scaffold_277-1491911889:192109..192207 | TCONS_00056572-exon-scaffold_277-1491911889:192109..192207 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1510915933:192109..192207 | TCONS_00056572-exon-scaffold_277-1510915933:192109..192207 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1575043694:192109..192207 | TCONS_00056572-exon-scaffold_277-1575043694:192109..192207 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1491911889:193476..193658 | TCONS_00056572-exon-scaffold_277-1491911889:193476..193658 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1510915933:193476..193658 | TCONS_00056572-exon-scaffold_277-1510915933:193476..193658 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1575043694:193476..193658 | TCONS_00056572-exon-scaffold_277-1575043694:193476..193658 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1491911889:194001..194066 | TCONS_00056572-exon-scaffold_277-1491911889:194001..194066 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1510915933:194001..194066 | TCONS_00056572-exon-scaffold_277-1510915933:194001..194066 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1575043694:194001..194066 | TCONS_00056572-exon-scaffold_277-1575043694:194001..194066 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1491911889:194463..194496 | TCONS_00056572-exon-scaffold_277-1491911889:194463..194496 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1510915933:194463..194496 | TCONS_00056572-exon-scaffold_277-1510915933:194463..194496 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1575043694:194463..194496 | TCONS_00056572-exon-scaffold_277-1575043694:194463..194496 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1491911889:194965..195991 | TCONS_00056572-exon-scaffold_277-1491911889:194965..195991 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1510915933:194965..195991 | TCONS_00056572-exon-scaffold_277-1510915933:194965..195991 | Clytia hemisphaerica | exon |
| TCONS_00056572-exon-scaffold_277-1575043694:194965..195991 | TCONS_00056572-exon-scaffold_277-1575043694:194965..195991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:192109..195991 + |
Blast
The following BLAST results are available for this feature:
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