TCONS_00056672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056672
Unique NameTCONS_00056672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=transcript|length=2289bp
AGATTGATTGAAGCAAAGTTTTATATGTTATAAAATTGACGACTCCGTTG
CTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCGACTATGTTATGGC
GACATATTGATGTATAGAAAAACTTTTGACATGGTTAACAATGCAAATCT
GAAAACTTATGAAGACAAGAAAGATGAACTTAAAACAAGAATTAATTCCA
ATCACCAATAACGCAAATCACAATAACAAGTTCACAATATTCTTTGGTct
aatatgttttgaaaatgggcAATATATTTCCAAAAGAGGACAACAGTTCA
CACATACATTGTGTCTTTTTGGAAATTCTGGAATGTCGCGACTTTTTGTT
CcgctcaaattttttttgaacgtaagcaaacttTACATAAGGCCTTAGAA
CACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagattttacgtacatgt
gaaaaaaactttaaggGTGGTGTAAAATCTACATCtttaaggtggtcgtt
aacaaacttttttaaaaacgGGCGGCGGGGTGGGCTTTTAGGGGCGGACC
GCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCtttatatgaaataaaa
ctttagGATATTGTTAAGTaaggttcaaactttaatttgaactaaaaatt
aaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAAGTGTTAACGACCA
CCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTAATTTGGAATGTCG
GGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaatatattcaaatct
TCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTTCCTACATGAACTG
GTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGGAAGTGGAAGAACA
GGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAAAGGAAGAAAC
AAAAACAGCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTC
AACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGCAAAACC
AAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAAATTTCG
TGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAAAACAACTTCA
AATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTCGACAAA
AACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATAGATACCGACG
ACTTTACGATGATTACTGATGACCACAAAATAAATGACTCAACAAATACT
GATGACATGAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCT
CGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATC
CAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGACATTATCTCT
GATACTGATAATACGGTTACTGATCACGAGGACTGTAATAAATTGACATT
CACTGACAACGATGACAGCATTAACAAGATAGACATGATAACTGTTAAGG
TTGACGAATCACTTGACATTGCAGCCATCATTCACCAACCGACATTGAAA
ACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTCGATCAT
ACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACAACGAAT
CAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAAATCCCTGAAA
ATGGAAgtatttgctttgaaaattgaaaatagtcAATTAAAAGAAGAAGT
CATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTC
AACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCACT
GGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAATGAATTT
TGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAACTGCAG
GATTATAGATGTTGATTGATAAATTCCATCCTGAAGAATTGAAACGGGGC
AATTTTTTAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGATAAGGTA
GCAGacatttattttaaattgaaaactgattttggtttggAGCAGGACTA
TGATATGTCGACACAGGAGTCAAAGAttcaggaaaaattaaaaaaaNGGT
AGCAGacatttattttaaattgaaaactgattttggtttggAGCAGGACT
ATGATATGTCGACACAGGAGTCAAAGATtcaggaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00056672-protein

>TCONS_00056672-protein ID=TCONS_00056672-protein|Name=TCONS_00056672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MARAEVEEQVTTNEEAEVQEPKRKKQKQPQTDIISTEKMANVNSFVFKKV
NLGLPVAKPKSSGFSVVCTEKRQNFVKNTSATTSKSADKTTSNDCDLTVK
PVDRDSSTKTLTIPENQEKITIDTDDFTMITDDHKINDSTNTDDMNTNDA
IQLDKVTNLDNVDTSTGTGLLRDDHPTDETVTKDATTDDIISDTDNTVTD
HEDCNKLTFTDNDDSINKIDMITVKVDESLDIAAIIHQPTLKTTPQNTRE
VLSNLGSIIPSSCSMLSEVLHAYNESGARQDHCVGDDFKSLKMEVFALKI
ENSQLKEEVISLKNVVANMNTEISSQLKDIKTAIERNPLIFTGEETLPAI
SVEDLQMNFDKPQQPTKDLGKMATAGL
Run BLAST on NCBI

transcript from alignment at scaffold_281:11675..14606+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=transcript|length=2932bp|location=Sequence derived from alignment at scaffold_281:11675..14606+ (Clytia hemisphaerica)
AGATTGATTGAAGCAAAGTTTTATATGTTATAAAATTGACGACTCCGTTG CTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCGACTATGTTATGGC GACATATTGATGTATAGAAAAACTTTTGACATGGTTAACAATGCAAATCT GAAAACTTATGAAGACAAGAAAGATGAACTTAAAACAAGAATTAATTCCA ATCACCAATAACGCAAATCACAATAACAAGTTCACAATATTCTTTGGTct aatatgttttgaaaatgggcAATATATTTCCAAAAGAGGACAACAGTTCA CACATACATTGTGTCTTTTTGGAAATTCTGGAATGTCGCGACTTTTTGTT CcgctcaaattttttttgaacgtaagcaaacttTACATAAGGCCTTAGAA CACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagattttacgtacatgt gaaaaaaactttaaggGTGGTGTAAAATCTACATCtttaaggtggtcgtt aacaaacttttttaaaaacgGGCGGCGGGGTGGGCTTTTAGGGGCGGACC GCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCtttatatgaaataaaa ctttagGATATTGTTAAGTaaggttcaaactttaatttgaactaaaaatt aaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAAGTGTTAACGACCA CCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTAATTTGGAATGTCG GGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaatatattcaaatct TCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTTCCTACATGAACTG GTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGGAAGTGGAAGAACA GGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAAAGGAAGAAAC AAAAACAGGTAATTATATTTCATTATATTATGTACAAACTCAAACATCGT CAATGACAGGGGGCAGTGTACAATAAAGCATCATGTAAGGATATTCCTGT TGTATTCTGGAGTCTTTTGGTTAGGTAGGACACTAATGTATGGGTGGGTG GAAACTGCTGCACAGCTCTAAAACAtgtcttttaaaatttcttaaactTA GTGAGAATTAATTTTAGTGAACAAcacaatttcaatatttatggCTGAAG AAAGAGGAAATAAATAGTTTTAGGAGAACAGAGActgaattgaaagaaaa ttacatCTGTTTGTTAATTTGATTTTCCAATGctgactttttttattttt attccgcCGCATAACTAGAGAAATGGAAAATATCGTAAATATTTAAATGC TCTTGACTAATGAAAACGCTGgtattttttggaataaaaaatgaGATAAA TTTTGGGGAGAACTTATTGGGCATTggtgaaatatttaattttaggcaaa ttttgtcaaactttccaataaaaattCTAACCAAAAAGGTTCGCTTAATG TAAATTTTCAGACTTTCCAATTAGTAAAGAATTTGGTAACACCTAAggta tttggaaaatttgagaatGATATTgaaatttgcattttttttccTTTGTA GCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTCAACTCGT TTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGCAAAACCAAAGTCT TCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAAATTTCGTGAAGAA CACGTCCGCCACAACATCCAAATCGGCTGACAAAACAACTTCAAATGACT GTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTCGACAAAAACTTTG ACAATTCCGGAAAACCAGGAGAAAATTACAATAGATACCGACGACTTTAC GATGATTACTGATGACCACAAAATAAATGACTCAACAAATACTGATGACA TGAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCTCGACAAT GTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATCCAACTGA CGAAACTGTTACCAAAGACGCCACAACTGACGACATTATCTCTGATACTG ATAATACGGTTACTGATCACGAGGACTGTAATAAATTGACATTCACTGAC AACGATGACAGCATTAACAAGATAGACATGATAACTGTTAAGGTTGACGA ATCACTTGACATTGCAGCCATCATTCACCAACCGACATTGAAAACCACAC CACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTCGATCATACCATCA TCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACAACGAATCAGGGGC GCGACAAGACCACTGCGTGGGTGATGATTTCAAATCCCTGAAAATGGAAg tatttgctttgaaaattgaaaatagtcAATTAAAAGAAGAAGTCATCTCC CTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTCAACTGAA AGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCACTGGCGAGG AAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAATGAATTTTGACAAG CCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAACTGCAGGATTATA GATGTTGATTGATAAATTCCATCCTGAAGAATTGAAACGGGGCAATTTTT TAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGATAAGGTAGCAGaca tttattttaaattgaaaactgattttggtttggAGCAGGACTATGATATG TCGACACAGGAGTCAAAGAttcaggaaaaattaaaaaaaNGGTAGCAGac atttattttaaattgaaaactgattttggtttggAGCAGGACTATGATAT GTCGACACAGGAGTCAAAGATtcaggaaaaat

Coding sequence (CDS) from alignment at scaffold_281:11675..14606+

>TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_281:11675..14606+ (Clytia hemisphaerica)
ATGGCAAGGGCGGAAGTGGAAGAACAGGTAACAACAAACGAAGAGGCTGA
AGTGCAAGAACCAAAAAGGAAGAAACAAAAACAGCCACAAACAGACATAA
TCTCAACAGAGAAGATGGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTT
AATTTGGGCTTACCTGTGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGT
GTGTACCGAGAAACGACAAAATTTCGTGAAGAACACGTCCGCCACAACAT
CCAAATCGGCTGACAAAACAACTTCAAATGACTGTGACTTAACGGTAAAA
CCAGTTGACCGAGACAGTTCGACAAAAACTTTGACAATTCCGGAAAACCA
GGAGAAAATTACAATAGATACCGACGACTTTACGATGATTACTGATGACC
ACAAAATAAATGACTCAACAAATACTGATGACATGAATACAAATGACGCT
ATCCAACTGGACAAAGTGACAAATCTCGACAATGTCGACACAAGTACAGG
GACAGGGTTGCTCCGTGATGACCATCCAACTGACGAAACTGTTACCAAAG
ACGCCACAACTGACGACATTATCTCTGATACTGATAATACGGTTACTGAT
CACGAGGACTGTAATAAATTGACATTCACTGACAACGATGACAGCATTAA
CAAGATAGACATGATAACTGTTAAGGTTGACGAATCACTTGACATTGCAG
CCATCATTCACCAACCGACATTGAAAACCACACCACAGAACACACGAGAA
GTTCTTTCAAATTTGGGCTCGATCATACCATCATCGTGTTCAATGCTGAG
TGAGGTCCTGCATGCGTACAACGAATCAGGGGCGCGACAAGACCACTGCG
TGGGTGATGATTTCAAATCCCTGAAAATGGAAgtatttgctttgaaaatt
gaaaatagtcAATTAAAAGAAGAAGTCATCTCCCTCAAAAATGTAGTTGC
AAACATGAACACAGAAATTTCATCTCAACTGAAAGATATTAAGACTGCGA
TTGAACGCAATCCTCTAATTTTCACTGGCGAGGAAACCTTACCTGCAATT
TCGGTTGAAGATTTGCAAATGAATTTTGACAAGCCCCAACAACCAACAAA
AGATCTCGGCAAGATGGCAACTGCAGGATTATAGATGGCAAGGGCGGAAG
TGGAAGAACAGGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAA
AGGAAGAAACAAAAACAGCCACAAACAGACATAATCTCAACAGAGAAGAT
GGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTG
TGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGA
CAAAATTTCGTGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAA
AACAACTTCAAATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACA
GTTCGACAAAAACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATA
GATACCGACGACTTTACGATGATTACTGATGACCACAAAATAAATGACTC
AACAAATACTGATGACATGAATACAAATGACGCTATCCAACTGGACAAAG
TGACAAATCTCGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGT
GATGACCATCCAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGA
CATTATCTCTGATACTGATAATACGGTTACTGATCACGAGGACTGTAATA
AATTGACATTCACTGACAACGATGACAGCATTAACAAGATAGACATGATA
ACTGTTAAGGTTGACGAATCACTTGACATTGCAGCCATCATTCACCAACC
GACATTGAAAACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGG
GCTCGATCATACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCG
TACAACGAATCAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAA
ATCCCTGAAAATGGAAgtatttgctttgaaaattgaaaatagtcAATTAA
AAGAAGAAGTCATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAA
ATTTCATCTCAACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCT
AATTTTCACTGGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGC
AAATGAATTTTGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATG
GCAACTGCAGGATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035695XLOC_035695Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056672-proteinTCONS_00056672-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056672-exon-scaffold_281-1491911889:11675..12632TCONS_00056672-exon-scaffold_281-1491911889:11675..12632Clytia hemisphaericaexon
TCONS_00056672-exon-scaffold_281-1510915933:11675..12632TCONS_00056672-exon-scaffold_281-1510915933:11675..12632Clytia hemisphaericaexon
TCONS_00056672-exon-scaffold_281-1575043694:11675..12632TCONS_00056672-exon-scaffold_281-1575043694:11675..12632Clytia hemisphaericaexon
TCONS_00056672-exon-scaffold_281-1491911889:13276..14606TCONS_00056672-exon-scaffold_281-1491911889:13276..14606Clytia hemisphaericaexon
TCONS_00056672-exon-scaffold_281-1510915933:13276..14606TCONS_00056672-exon-scaffold_281-1510915933:13276..14606Clytia hemisphaericaexon
TCONS_00056672-exon-scaffold_281-1575043694:13276..14606TCONS_00056672-exon-scaffold_281-1575043694:13276..14606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:11675..14606 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1.22983 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0531365 0.124672 0.0361889 0.0566824 0.184014 0.0681203 0.123276 0.0384699 0.224327 0.112171 0.120964 0.121112 0.146193 0.220755 0.848882 0.742904 0.962767 0.949936 1.00228 0.856864 1.22983 0.812152 0.0732938 0.619209 0 0.267197 0.604017 0.377789 0.496654 0.422329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Sequence
Match NameE-valueIdentityDescription
back to top