Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=transcript|length=2289bp AGATTGATTGAAGCAAAGTTTTATATGTTATAAAATTGACGACTCCGTTG CTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCGACTATGTTATGGC GACATATTGATGTATAGAAAAACTTTTGACATGGTTAACAATGCAAATCT GAAAACTTATGAAGACAAGAAAGATGAACTTAAAACAAGAATTAATTCCA ATCACCAATAACGCAAATCACAATAACAAGTTCACAATATTCTTTGGTct aatatgttttgaaaatgggcAATATATTTCCAAAAGAGGACAACAGTTCA CACATACATTGTGTCTTTTTGGAAATTCTGGAATGTCGCGACTTTTTGTT CcgctcaaattttttttgaacgtaagcaaacttTACATAAGGCCTTAGAA CACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagattttacgtacatgt gaaaaaaactttaaggGTGGTGTAAAATCTACATCtttaaggtggtcgtt aacaaacttttttaaaaacgGGCGGCGGGGTGGGCTTTTAGGGGCGGACC GCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCtttatatgaaataaaa ctttagGATATTGTTAAGTaaggttcaaactttaatttgaactaaaaatt aaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAAGTGTTAACGACCA CCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTAATTTGGAATGTCG GGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaatatattcaaatct TCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTTCCTACATGAACTG GTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGGAAGTGGAAGAACA GGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAAAGGAAGAAAC AAAAACAGCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTC AACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGCAAAACC AAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAAATTTCG TGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAAAACAACTTCA AATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTCGACAAA AACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATAGATACCGACG ACTTTACGATGATTACTGATGACCACAAAATAAATGACTCAACAAATACT GATGACATGAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCT CGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATC CAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGACATTATCTCT GATACTGATAATACGGTTACTGATCACGAGGACTGTAATAAATTGACATT CACTGACAACGATGACAGCATTAACAAGATAGACATGATAACTGTTAAGG TTGACGAATCACTTGACATTGCAGCCATCATTCACCAACCGACATTGAAA ACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTCGATCAT ACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACAACGAAT CAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAAATCCCTGAAA ATGGAAgtatttgctttgaaaattgaaaatagtcAATTAAAAGAAGAAGT CATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTC AACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCACT GGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAATGAATTT TGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAACTGCAG GATTATAGATGTTGATTGATAAATTCCATCCTGAAGAATTGAAACGGGGC AATTTTTTAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGATAAGGTA GCAGacatttattttaaattgaaaactgattttggtttggAGCAGGACTA TGATATGTCGACACAGGAGTCAAAGAttcaggaaaaattaaaaaaaNGGT AGCAGacatttattttaaattgaaaactgattttggtttggAGCAGGACT ATGATATGTCGACACAGGAGTCAAAGATtcaggaaaaat Run BLAST on NCBI protein sequence of TCONS_00056672-protein >TCONS_00056672-protein ID=TCONS_00056672-protein|Name=TCONS_00056672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MARAEVEEQVTTNEEAEVQEPKRKKQKQPQTDIISTEKMANVNSFVFKKV NLGLPVAKPKSSGFSVVCTEKRQNFVKNTSATTSKSADKTTSNDCDLTVK PVDRDSSTKTLTIPENQEKITIDTDDFTMITDDHKINDSTNTDDMNTNDA IQLDKVTNLDNVDTSTGTGLLRDDHPTDETVTKDATTDDIISDTDNTVTD HEDCNKLTFTDNDDSINKIDMITVKVDESLDIAAIIHQPTLKTTPQNTRE VLSNLGSIIPSSCSMLSEVLHAYNESGARQDHCVGDDFKSLKMEVFALKI ENSQLKEEVISLKNVVANMNTEISSQLKDIKTAIERNPLIFTGEETLPAI SVEDLQMNFDKPQQPTKDLGKMATAGL Run BLAST on NCBI transcript from alignment at scaffold_281:11675..14606+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=transcript|length=2932bp|location=Sequence derived from alignment at scaffold_281:11675..14606+ (Clytia hemisphaerica) AGATTGATTGAAGCAAAGTTTTATATGTTATAAAATTGACGACTCCGTTG
CTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCGACTATGTTATGGC
GACATATTGATGTATAGAAAAACTTTTGACATGGTTAACAATGCAAATCT
GAAAACTTATGAAGACAAGAAAGATGAACTTAAAACAAGAATTAATTCCA
ATCACCAATAACGCAAATCACAATAACAAGTTCACAATATTCTTTGGTct
aatatgttttgaaaatgggcAATATATTTCCAAAAGAGGACAACAGTTCA
CACATACATTGTGTCTTTTTGGAAATTCTGGAATGTCGCGACTTTTTGTT
CcgctcaaattttttttgaacgtaagcaaacttTACATAAGGCCTTAGAA
CACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagattttacgtacatgt
gaaaaaaactttaaggGTGGTGTAAAATCTACATCtttaaggtggtcgtt
aacaaacttttttaaaaacgGGCGGCGGGGTGGGCTTTTAGGGGCGGACC
GCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCtttatatgaaataaaa
ctttagGATATTGTTAAGTaaggttcaaactttaatttgaactaaaaatt
aaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAAGTGTTAACGACCA
CCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTAATTTGGAATGTCG
GGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaatatattcaaatct
TCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTTCCTACATGAACTG
GTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGGAAGTGGAAGAACA
GGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAAAGGAAGAAAC
AAAAACAGGTAATTATATTTCATTATATTATGTACAAACTCAAACATCGT
CAATGACAGGGGGCAGTGTACAATAAAGCATCATGTAAGGATATTCCTGT
TGTATTCTGGAGTCTTTTGGTTAGGTAGGACACTAATGTATGGGTGGGTG
GAAACTGCTGCACAGCTCTAAAACAtgtcttttaaaatttcttaaactTA
GTGAGAATTAATTTTAGTGAACAAcacaatttcaatatttatggCTGAAG
AAAGAGGAAATAAATAGTTTTAGGAGAACAGAGActgaattgaaagaaaa
ttacatCTGTTTGTTAATTTGATTTTCCAATGctgactttttttattttt
attccgcCGCATAACTAGAGAAATGGAAAATATCGTAAATATTTAAATGC
TCTTGACTAATGAAAACGCTGgtattttttggaataaaaaatgaGATAAA
TTTTGGGGAGAACTTATTGGGCATTggtgaaatatttaattttaggcaaa
ttttgtcaaactttccaataaaaattCTAACCAAAAAGGTTCGCTTAATG
TAAATTTTCAGACTTTCCAATTAGTAAAGAATTTGGTAACACCTAAggta
tttggaaaatttgagaatGATATTgaaatttgcattttttttccTTTGTA
GCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTCAACTCGT
TTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGCAAAACCAAAGTCT
TCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAAATTTCGTGAAGAA
CACGTCCGCCACAACATCCAAATCGGCTGACAAAACAACTTCAAATGACT
GTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTCGACAAAAACTTTG
ACAATTCCGGAAAACCAGGAGAAAATTACAATAGATACCGACGACTTTAC
GATGATTACTGATGACCACAAAATAAATGACTCAACAAATACTGATGACA
TGAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCTCGACAAT
GTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATCCAACTGA
CGAAACTGTTACCAAAGACGCCACAACTGACGACATTATCTCTGATACTG
ATAATACGGTTACTGATCACGAGGACTGTAATAAATTGACATTCACTGAC
AACGATGACAGCATTAACAAGATAGACATGATAACTGTTAAGGTTGACGA
ATCACTTGACATTGCAGCCATCATTCACCAACCGACATTGAAAACCACAC
CACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTCGATCATACCATCA
TCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACAACGAATCAGGGGC
GCGACAAGACCACTGCGTGGGTGATGATTTCAAATCCCTGAAAATGGAAg
tatttgctttgaaaattgaaaatagtcAATTAAAAGAAGAAGTCATCTCC
CTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTCAACTGAA
AGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCACTGGCGAGG
AAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAATGAATTTTGACAAG
CCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAACTGCAGGATTATA
GATGTTGATTGATAAATTCCATCCTGAAGAATTGAAACGGGGCAATTTTT
TAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGATAAGGTAGCAGaca
tttattttaaattgaaaactgattttggtttggAGCAGGACTATGATATG
TCGACACAGGAGTCAAAGAttcaggaaaaattaaaaaaaNGGTAGCAGac
atttattttaaattgaaaactgattttggtttggAGCAGGACTATGATAT
GTCGACACAGGAGTCAAAGATtcaggaaaaat Coding sequence (CDS) from alignment at scaffold_281:11675..14606+ >TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_281:11675..14606+ (Clytia hemisphaerica) ATGGCAAGGGCGGAAGTGGAAGAACAGGTAACAACAAACGAAGAGGCTGA AGTGCAAGAACCAAAAAGGAAGAAACAAAAACAGCCACAAACAGACATAA TCTCAACAGAGAAGATGGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTT AATTTGGGCTTACCTGTGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGT GTGTACCGAGAAACGACAAAATTTCGTGAAGAACACGTCCGCCACAACAT CCAAATCGGCTGACAAAACAACTTCAAATGACTGTGACTTAACGGTAAAA CCAGTTGACCGAGACAGTTCGACAAAAACTTTGACAATTCCGGAAAACCA GGAGAAAATTACAATAGATACCGACGACTTTACGATGATTACTGATGACC ACAAAATAAATGACTCAACAAATACTGATGACATGAATACAAATGACGCT ATCCAACTGGACAAAGTGACAAATCTCGACAATGTCGACACAAGTACAGG GACAGGGTTGCTCCGTGATGACCATCCAACTGACGAAACTGTTACCAAAG ACGCCACAACTGACGACATTATCTCTGATACTGATAATACGGTTACTGAT CACGAGGACTGTAATAAATTGACATTCACTGACAACGATGACAGCATTAA CAAGATAGACATGATAACTGTTAAGGTTGACGAATCACTTGACATTGCAG CCATCATTCACCAACCGACATTGAAAACCACACCACAGAACACACGAGAA GTTCTTTCAAATTTGGGCTCGATCATACCATCATCGTGTTCAATGCTGAG TGAGGTCCTGCATGCGTACAACGAATCAGGGGCGCGACAAGACCACTGCG TGGGTGATGATTTCAAATCCCTGAAAATGGAAgtatttgctttgaaaatt gaaaatagtcAATTAAAAGAAGAAGTCATCTCCCTCAAAAATGTAGTTGC AAACATGAACACAGAAATTTCATCTCAACTGAAAGATATTAAGACTGCGA TTGAACGCAATCCTCTAATTTTCACTGGCGAGGAAACCTTACCTGCAATT TCGGTTGAAGATTTGCAAATGAATTTTGACAAGCCCCAACAACCAACAAA AGATCTCGGCAAGATGGCAACTGCAGGATTATAGATGGCAAGGGCGGAAG TGGAAGAACAGGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAA AGGAAGAAACAAAAACAGCCACAAACAGACATAATCTCAACAGAGAAGAT GGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTG TGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGA CAAAATTTCGTGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAA AACAACTTCAAATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACA GTTCGACAAAAACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATA GATACCGACGACTTTACGATGATTACTGATGACCACAAAATAAATGACTC AACAAATACTGATGACATGAATACAAATGACGCTATCCAACTGGACAAAG TGACAAATCTCGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGT GATGACCATCCAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGA CATTATCTCTGATACTGATAATACGGTTACTGATCACGAGGACTGTAATA AATTGACATTCACTGACAACGATGACAGCATTAACAAGATAGACATGATA ACTGTTAAGGTTGACGAATCACTTGACATTGCAGCCATCATTCACCAACC GACATTGAAAACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGG GCTCGATCATACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCG TACAACGAATCAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAA ATCCCTGAAAATGGAAgtatttgctttgaaaattgaaaatagtcAATTAA AAGAAGAAGTCATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAA ATTTCATCTCAACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCT AATTTTCACTGGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGC AAATGAATTTTGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATG GCAACTGCAGGATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056672-exon-scaffold_281-1491911889:11675..12632 | TCONS_00056672-exon-scaffold_281-1491911889:11675..12632 | Clytia hemisphaerica | exon |
TCONS_00056672-exon-scaffold_281-1510915933:11675..12632 | TCONS_00056672-exon-scaffold_281-1510915933:11675..12632 | Clytia hemisphaerica | exon |
TCONS_00056672-exon-scaffold_281-1575043694:11675..12632 | TCONS_00056672-exon-scaffold_281-1575043694:11675..12632 | Clytia hemisphaerica | exon |
TCONS_00056672-exon-scaffold_281-1491911889:13276..14606 | TCONS_00056672-exon-scaffold_281-1491911889:13276..14606 | Clytia hemisphaerica | exon |
TCONS_00056672-exon-scaffold_281-1510915933:13276..14606 | TCONS_00056672-exon-scaffold_281-1510915933:13276..14606 | Clytia hemisphaerica | exon |
TCONS_00056672-exon-scaffold_281-1575043694:13276..14606 | TCONS_00056672-exon-scaffold_281-1575043694:13276..14606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_281 | supercontig | scaffold_281:11675..14606 + |
Blast
The following BLAST results are available for this feature:
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