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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=transcript|length=2289bp
AGATTGATTGAAGCAAAGTTTTATATGTTATAAAATTGACGACTCCGTTG
CTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCGACTATGTTATGGC
GACATATTGATGTATAGAAAAACTTTTGACATGGTTAACAATGCAAATCT
GAAAACTTATGAAGACAAGAAAGATGAACTTAAAACAAGAATTAATTCCA
ATCACCAATAACGCAAATCACAATAACAAGTTCACAATATTCTTTGGTct
aatatgttttgaaaatgggcAATATATTTCCAAAAGAGGACAACAGTTCA
CACATACATTGTGTCTTTTTGGAAATTCTGGAATGTCGCGACTTTTTGTT
CcgctcaaattttttttgaacgtaagcaaacttTACATAAGGCCTTAGAA
CACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagattttacgtacatgt
gaaaaaaactttaaggGTGGTGTAAAATCTACATCtttaaggtggtcgtt
aacaaacttttttaaaaacgGGCGGCGGGGTGGGCTTTTAGGGGCGGACC
GCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCtttatatgaaataaaa
ctttagGATATTGTTAAGTaaggttcaaactttaatttgaactaaaaatt
aaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAAGTGTTAACGACCA
CCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTAATTTGGAATGTCG
GGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaatatattcaaatct
TCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTTCCTACATGAACTG
GTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGGAAGTGGAAGAACA
GGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAAAGGAAGAAAC
AAAAACAGCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTC
AACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGCAAAACC
AAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAAATTTCG
TGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAAAACAACTTCA
AATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTCGACAAA
AACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATAGATACCGACG
ACTTTACGATGATTACTGATGACCACAAAATAAATGACTCAACAAATACT
GATGACATGAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCT
CGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATC
CAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGACATTATCTCT
GATACTGATAATACGGTTACTGATCACGAGGACTGTAATAAATTGACATT
CACTGACAACGATGACAGCATTAACAAGATAGACATGATAACTGTTAAGG
TTGACGAATCACTTGACATTGCAGCCATCATTCACCAACCGACATTGAAA
ACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTCGATCAT
ACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACAACGAAT
CAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAAATCCCTGAAA
ATGGAAgtatttgctttgaaaattgaaaatagtcAATTAAAAGAAGAAGT
CATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTC
AACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCACT
GGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAATGAATTT
TGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAACTGCAG
GATTATAGATGTTGATTGATAAATTCCATCCTGAAGAATTGAAACGGGGC
AATTTTTTAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGATAAGGTA
GCAGacatttattttaaattgaaaactgattttggtttggAGCAGGACTA
TGATATGTCGACACAGGAGTCAAAGAttcaggaaaaattaaaaaaaNGGT
AGCAGacatttattttaaattgaaaactgattttggtttggAGCAGGACT
ATGATATGTCGACACAGGAGTCAAAGATtcaggaaaaat Run BLAST on NCBI protein sequence of TCONS_00056672-protein >TCONS_00056672-protein ID=TCONS_00056672-protein|Name=TCONS_00056672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MARAEVEEQVTTNEEAEVQEPKRKKQKQPQTDIISTEKMANVNSFVFKKV
NLGLPVAKPKSSGFSVVCTEKRQNFVKNTSATTSKSADKTTSNDCDLTVK
PVDRDSSTKTLTIPENQEKITIDTDDFTMITDDHKINDSTNTDDMNTNDA
IQLDKVTNLDNVDTSTGTGLLRDDHPTDETVTKDATTDDIISDTDNTVTD
HEDCNKLTFTDNDDSINKIDMITVKVDESLDIAAIIHQPTLKTTPQNTRE
VLSNLGSIIPSSCSMLSEVLHAYNESGARQDHCVGDDFKSLKMEVFALKI
ENSQLKEEVISLKNVVANMNTEISSQLKDIKTAIERNPLIFTGEETLPAI
SVEDLQMNFDKPQQPTKDLGKMATAGL Run BLAST on NCBI transcript from alignment at scaffold_281:11675..14606+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=transcript|length=2932bp|location=Sequence derived from alignment at scaffold_281:11675..14606+ (Clytia hemisphaerica)
AGATTGATTGAAGCAAAGTTTTATATGTTATAAAATTGACGACTCCGTTG
CTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCGACTATGTTATGGC
GACATATTGATGTATAGAAAAACTTTTGACATGGTTAACAATGCAAATCT
GAAAACTTATGAAGACAAGAAAGATGAACTTAAAACAAGAATTAATTCCA
ATCACCAATAACGCAAATCACAATAACAAGTTCACAATATTCTTTGGTct
aatatgttttgaaaatgggcAATATATTTCCAAAAGAGGACAACAGTTCA
CACATACATTGTGTCTTTTTGGAAATTCTGGAATGTCGCGACTTTTTGTT
CcgctcaaattttttttgaacgtaagcaaacttTACATAAGGCCTTAGAA
CACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagattttacgtacatgt
gaaaaaaactttaaggGTGGTGTAAAATCTACATCtttaaggtggtcgtt
aacaaacttttttaaaaacgGGCGGCGGGGTGGGCTTTTAGGGGCGGACC
GCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCtttatatgaaataaaa
ctttagGATATTGTTAAGTaaggttcaaactttaatttgaactaaaaatt
aaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAAGTGTTAACGACCA
CCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTAATTTGGAATGTCG
GGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaatatattcaaatct
TCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTTCCTACATGAACTG
GTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGGAAGTGGAAGAACA
GGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAAAGGAAGAAAC
AAAAACAGGTAATTATATTTCATTATATTATGTACAAACTCAAACATCGT
CAATGACAGGGGGCAGTGTACAATAAAGCATCATGTAAGGATATTCCTGT
TGTATTCTGGAGTCTTTTGGTTAGGTAGGACACTAATGTATGGGTGGGTG
GAAACTGCTGCACAGCTCTAAAACAtgtcttttaaaatttcttaaactTA
GTGAGAATTAATTTTAGTGAACAAcacaatttcaatatttatggCTGAAG
AAAGAGGAAATAAATAGTTTTAGGAGAACAGAGActgaattgaaagaaaa
ttacatCTGTTTGTTAATTTGATTTTCCAATGctgactttttttattttt
attccgcCGCATAACTAGAGAAATGGAAAATATCGTAAATATTTAAATGC
TCTTGACTAATGAAAACGCTGgtattttttggaataaaaaatgaGATAAA
TTTTGGGGAGAACTTATTGGGCATTggtgaaatatttaattttaggcaaa
ttttgtcaaactttccaataaaaattCTAACCAAAAAGGTTCGCTTAATG
TAAATTTTCAGACTTTCCAATTAGTAAAGAATTTGGTAACACCTAAggta
tttggaaaatttgagaatGATATTgaaatttgcattttttttccTTTGTA
GCCACAAACAGACATAATCTCAACAGAGAAGATGGCCAACGTCAACTCGT
TTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGCAAAACCAAAGTCT
TCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAAATTTCGTGAAGAA
CACGTCCGCCACAACATCCAAATCGGCTGACAAAACAACTTCAAATGACT
GTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTCGACAAAAACTTTG
ACAATTCCGGAAAACCAGGAGAAAATTACAATAGATACCGACGACTTTAC
GATGATTACTGATGACCACAAAATAAATGACTCAACAAATACTGATGACA
TGAATACAAATGACGCTATCCAACTGGACAAAGTGACAAATCTCGACAAT
GTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATGACCATCCAACTGA
CGAAACTGTTACCAAAGACGCCACAACTGACGACATTATCTCTGATACTG
ATAATACGGTTACTGATCACGAGGACTGTAATAAATTGACATTCACTGAC
AACGATGACAGCATTAACAAGATAGACATGATAACTGTTAAGGTTGACGA
ATCACTTGACATTGCAGCCATCATTCACCAACCGACATTGAAAACCACAC
CACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTCGATCATACCATCA
TCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACAACGAATCAGGGGC
GCGACAAGACCACTGCGTGGGTGATGATTTCAAATCCCTGAAAATGGAAg
tatttgctttgaaaattgaaaatagtcAATTAAAAGAAGAAGTCATCTCC
CTCAAAAATGTAGTTGCAAACATGAACACAGAAATTTCATCTCAACTGAA
AGATATTAAGACTGCGATTGAACGCAATCCTCTAATTTTCACTGGCGAGG
AAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAATGAATTTTGACAAG
CCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAACTGCAGGATTATA
GATGTTGATTGATAAATTCCATCCTGAAGAATTGAAACGGGGCAATTTTT
TAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGATAAGGTAGCAGaca
tttattttaaattgaaaactgattttggtttggAGCAGGACTATGATATG
TCGACACAGGAGTCAAAGAttcaggaaaaattaaaaaaaNGGTAGCAGac
atttattttaaattgaaaactgattttggtttggAGCAGGACTATGATAT
GTCGACACAGGAGTCAAAGATtcaggaaaaat Coding sequence (CDS) from alignment at scaffold_281:11675..14606+ >TCONS_00056672 ID=TCONS_00056672|Name=TCONS_00056672|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_281:11675..14606+ (Clytia hemisphaerica)
ATGGCAAGGGCGGAAGTGGAAGAACAGGTAACAACAAACGAAGAGGCTGA
AGTGCAAGAACCAAAAAGGAAGAAACAAAAACAGCCACAAACAGACATAA
TCTCAACAGAGAAGATGGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTT
AATTTGGGCTTACCTGTGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGT
GTGTACCGAGAAACGACAAAATTTCGTGAAGAACACGTCCGCCACAACAT
CCAAATCGGCTGACAAAACAACTTCAAATGACTGTGACTTAACGGTAAAA
CCAGTTGACCGAGACAGTTCGACAAAAACTTTGACAATTCCGGAAAACCA
GGAGAAAATTACAATAGATACCGACGACTTTACGATGATTACTGATGACC
ACAAAATAAATGACTCAACAAATACTGATGACATGAATACAAATGACGCT
ATCCAACTGGACAAAGTGACAAATCTCGACAATGTCGACACAAGTACAGG
GACAGGGTTGCTCCGTGATGACCATCCAACTGACGAAACTGTTACCAAAG
ACGCCACAACTGACGACATTATCTCTGATACTGATAATACGGTTACTGAT
CACGAGGACTGTAATAAATTGACATTCACTGACAACGATGACAGCATTAA
CAAGATAGACATGATAACTGTTAAGGTTGACGAATCACTTGACATTGCAG
CCATCATTCACCAACCGACATTGAAAACCACACCACAGAACACACGAGAA
GTTCTTTCAAATTTGGGCTCGATCATACCATCATCGTGTTCAATGCTGAG
TGAGGTCCTGCATGCGTACAACGAATCAGGGGCGCGACAAGACCACTGCG
TGGGTGATGATTTCAAATCCCTGAAAATGGAAgtatttgctttgaaaatt
gaaaatagtcAATTAAAAGAAGAAGTCATCTCCCTCAAAAATGTAGTTGC
AAACATGAACACAGAAATTTCATCTCAACTGAAAGATATTAAGACTGCGA
TTGAACGCAATCCTCTAATTTTCACTGGCGAGGAAACCTTACCTGCAATT
TCGGTTGAAGATTTGCAAATGAATTTTGACAAGCCCCAACAACCAACAAA
AGATCTCGGCAAGATGGCAACTGCAGGATTATAGATGGCAAGGGCGGAAG
TGGAAGAACAGGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCAAAA
AGGAAGAAACAAAAACAGCCACAAACAGACATAATCTCAACAGAGAAGAT
GGCCAACGTCAACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTG
TGGCAAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGA
CAAAATTTCGTGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAA
AACAACTTCAAATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACA
GTTCGACAAAAACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATA
GATACCGACGACTTTACGATGATTACTGATGACCACAAAATAAATGACTC
AACAAATACTGATGACATGAATACAAATGACGCTATCCAACTGGACAAAG
TGACAAATCTCGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGT
GATGACCATCCAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGA
CATTATCTCTGATACTGATAATACGGTTACTGATCACGAGGACTGTAATA
AATTGACATTCACTGACAACGATGACAGCATTAACAAGATAGACATGATA
ACTGTTAAGGTTGACGAATCACTTGACATTGCAGCCATCATTCACCAACC
GACATTGAAAACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGG
GCTCGATCATACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCG
TACAACGAATCAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAA
ATCCCTGAAAATGGAAgtatttgctttgaaaattgaaaatagtcAATTAA
AAGAAGAAGTCATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAA
ATTTCATCTCAACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCT
AATTTTCACTGGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGC
AAATGAATTTTGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATG
GCAACTGCAGGATTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056672-exon-scaffold_281-1491911889:11675..12632 | TCONS_00056672-exon-scaffold_281-1491911889:11675..12632 | Clytia hemisphaerica | exon |
| TCONS_00056672-exon-scaffold_281-1510915933:11675..12632 | TCONS_00056672-exon-scaffold_281-1510915933:11675..12632 | Clytia hemisphaerica | exon |
| TCONS_00056672-exon-scaffold_281-1575043694:11675..12632 | TCONS_00056672-exon-scaffold_281-1575043694:11675..12632 | Clytia hemisphaerica | exon |
| TCONS_00056672-exon-scaffold_281-1491911889:13276..14606 | TCONS_00056672-exon-scaffold_281-1491911889:13276..14606 | Clytia hemisphaerica | exon |
| TCONS_00056672-exon-scaffold_281-1510915933:13276..14606 | TCONS_00056672-exon-scaffold_281-1510915933:13276..14606 | Clytia hemisphaerica | exon |
| TCONS_00056672-exon-scaffold_281-1575043694:13276..14606 | TCONS_00056672-exon-scaffold_281-1575043694:13276..14606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:11675..14606 + |
Blast
The following BLAST results are available for this feature:
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