TCONS_00056732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056732
Unique NameTCONS_00056732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056732 ID=TCONS_00056732|Name=TCONS_00056732|organism=Clytia hemisphaerica|type=transcript|length=880bp
CAGGTTCTCCATTCATACAGCGCACACAAGGTTTTGTTGATATCAGTGAT
TTCTCAGCAACTTGCATCTgttgttgattttgattttgtgaTTGAGCCTA
AAGAACAGAGATTTCGATTTGCTAAAATAGACCAGAAAACTAtgataaaa
aagttttgttttaagtactaaaaaaaataaacaaaagttgTACCATTCGT
GAAAAGTTTGCATTTCCATTTACTTGGACTTCATTGGATTTTGCAcgctg
aaaataaaattttggttcaatATAATTAGCAAACTTATTTTGATACGTGA
ATAGTCAGATAAAGAAATACAACACAATTATCTTTTGAATAACACATTCA
AATAAAGTAGCCAAATACAGCCAGTAGCCAAAGCATAATTCCCATTGTAT
TTATAGTCATCCAGAGGATTTCCAATCATTGGTGTTATAACAAAATGCTA
TCTGTGTAGAATTTTCTCAAAGTAAATATATGGGAATTGatggaaaacaa
aaaatacttttcGCTGTTGATTCATGGTATTGCATCTTGCCCCTTGGCAT
TCCATATCTACATCGCCATTGTCATCCACTGaagaaaaatttctcttttt
accCCCATTTGGTAGTGGTGTTACATTTTGGTGTTGATGATGATAATTTC
CATTTATAAGCTCCTGTTGTTGACATCTGTTATGAACTTCCAAATGTTGA
AGTTTTTGCGTTAAATTATTATGTTGTTGTTGTAAAGAATGGTAGCTGCA
AAAACATTCATCCAGTAACATCCTCACAGTCTTGACTTTATTTCAAAGTG
TTTGATTTACTCTGCTGTGTGCAAGAAAAGTATAATATGTATAATATCCA
TTATTTGACGCAATGGAGCATAAACTCCAG
Run BLAST on NCBI

transcript from alignment at scaffold_282:194344..195293+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056732 ID=TCONS_00056732|Name=TCONS_00056732|organism=Clytia hemisphaerica|type=transcript|length=950bp|location=Sequence derived from alignment at scaffold_282:194344..195293+ (Clytia hemisphaerica)
CAGGTTCTCCATTCATACAGCGCACACAAGGTTTTGTTGATATCAGTGAT TTCTCAGCAACTTGCATCTgttgttgattttgattttgtgaTTGAGCCTA AAGAACAGAGATTTCGATTTGCTAAAATAGACCAGAAAACTAtgataaaa aagttttgttttaagtactaaaaaaaataaacaaaagttgTACCATTCGT GAAAAGTTTGCATTTCCATTTACTTGGACTTCATTGGATTTTGCAcgctg aaaataaaattttggttcaatATAATTAGCAAACTTATTTTGATACGTGA ATAGTCAGATAAAGAAATACAACACAATTATCTTTTGAATAACACATTCA AATAAAGTAGCCAAATACAGCCAGTAGCCAAAGCATAATTCCCATTGTAT TTATAGTCATCCAGAGGATTTCCAATCATTGGTGTTATAACAAAATGCTA TCTGTGTAGAATTTTCTCAAAGTAAATATATGGGAATTGatggaaaacaa aaaatacttttcGCTGTTGATTCATGGTATTGCATCTTGCCCCTTGGCAT TCCATATCTACATCGCCATTGTCATCCACTGaagaaaaatttctcttttt accCCCATTTGGTAGTGGTGTTACATTTTGGTGTTGATGATGATAATTTC CATTTATAAGCTCCTGTTGTTGACATCTGTTATGAACTNGTTACATTTTG GTGTTGATGATGATAATTTCCATTTATAAGCTCATGTTGTTGACATCTGT TATGAACTTCCAAATGTTGAAGTTTTTGCGTTAAATTATTATGTTGTTGT TGTAAAGAATGGTAGCTGCAAAAACATTCATCCAGTAACATCCTCACAGT CTTGACTTTATTTCAAAGTGTTTGATTTACTCTGCTGTGTGCAAGAAAAG TATAATATGTATAATATCCATTATTTGACGCAATGGAGCATAAACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035745XLOC_035745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056732-exon-scaffold_282-1491911889:194344..195017TCONS_00056732-exon-scaffold_282-1491911889:194344..195017Clytia hemisphaericaexon
TCONS_00056732-exon-scaffold_282-1510915933:194344..195017TCONS_00056732-exon-scaffold_282-1510915933:194344..195017Clytia hemisphaericaexon
TCONS_00056732-exon-scaffold_282-1575043694:194344..195017TCONS_00056732-exon-scaffold_282-1575043694:194344..195017Clytia hemisphaericaexon
TCONS_00056732-exon-scaffold_282-1491911889:195088..195293TCONS_00056732-exon-scaffold_282-1491911889:195088..195293Clytia hemisphaericaexon
TCONS_00056732-exon-scaffold_282-1510915933:195088..195293TCONS_00056732-exon-scaffold_282-1510915933:195088..195293Clytia hemisphaericaexon
TCONS_00056732-exon-scaffold_282-1575043694:195088..195293TCONS_00056732-exon-scaffold_282-1575043694:195088..195293Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:194344..195293 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.00226 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.207581 0.428497 0 0.264952 0.760945 0 0.688801 0.249286 0.14525 0.839008 1.00226 0 0.0718019 0.248881 0.202254 0.082587 0 0 0 0 0.524178 0.167279 0.320377 0.0841833 0.023633 0.578142 0 0.25959 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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