|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056741 ID=TCONS_00056741|Name=TCONS_00056741|organism=Clytia hemisphaerica|type=transcript|length=2380bp
TATAAAAAGAAAAGCTAAGCATCGTTGTACTCATATTTAAGTAAAAGAGC
ATAGTAGTGCAACGCGAGAGGGTATAAGGGTACTAACACAGTGGGACAGC
GAACCCTACAAAAAAGACTAACCATCAATTGATATTCTCGCATAAAGAAG
TACATACTACATACACAAAAGAAacaacattttgattttgaatacaCACG
ACAGACTGAGTGGACAAGGAAGCTTCATTTTACGTGATACATTTTGAACT
ACAAGGATTATTAGACCAACAAAATAATAATCGAGACGAGACAAAATCTG
AAGAGCTTGAAGGATTTATGTATGGTTTTTTATCGCGCAAGATTACTATC
ACATCTTAAATCTTGATTTTACTATTAACATCATCTTTCGAACCTTAAAA
TctttaaactaaaaaaaatgattGGCTTTGGAATGAAAACGAGGTTGGCA
ATCATCTACTGCGCATGCGTTCTATTCTCTTTATTTGGTGCATGCTCCAA
CGTCGAATTAAAAATGAACGATATTGAATCAATGAACCCATACGTTCTCT
GTAGTTCCATTCCAAAATACATCAAGAAAGGAACGAATCTCAAATGTTCA
ATGGAGAAACAAAAATTGACCAACGTTTACCGTGGTATTCGAGTTGCAGC
CAAAGAATGTCGATATCAATTTCAGATGAGACCGTGGAATTGTTCAGCTG
CTTTCGAATCTGCACCAAGGATCACCTATTATCCTATCCCTGAAACTGCA
TTCTTGTATGCCATCAATTCAGCCGGCATCGCTTACTCCTTGGCGTGGGC
GTGTTACGAAGGCAAAACAAAAGACTGTATGTGTGAAAAACAAAAATCGG
TAAACATCACAACcgaaacattacttaaacatcaAGCCAATCAGAAATCC
CCGGAACAACCGCATATAATGGAGGACCGTAAATGCGCGAAACACAGTTT
ACAATATGGAATTGAAGAATCAATGCAATTGTTGGAAAACAAACATGAGA
ACGATATCCGATGGCGAATGGATAACCATAATAAACAAGCTGGACGATTG
GCTCTTATCGATGGACCAATCAACAAGAATCGAGTATGCAGCTGTCACGG
TGTATCTGGAGCTTGTACTATTTCAAAATGTACATTGAAATTACCGAAAT
TTGGTGATGTTTCAGATTATCTAATGGAGAAATATAAATCAGCCGTCCGA
ATGGGTTCCAATAACCATGGACACTTGATCCCACATCGAGACACTTTGAA
CAAAAAACCAACAGAGAATGATTTAGTCTACTTACAAGAGAGTCCAAGTT
TTTGCTCTAAGGACAAAAAATATGGTATTCTGGGCACCAAAGATCGTGTT
TGCGACCCGAAGAGTAAAGGACCTCAAGGTTGTGATGTCTTGTGTTGCAA
TCGTGGGTCAGAGAAAATTGTAGAAGTTGAAAAACGACAATGTAAATGTA
AGTTTAAGTATTGCTGTGAAGTGAAATGTCAAACATGTGAAAAACGAGTA
GAATTAGATGTCTGCAAATAGGTGACGAGATTGagtaaagatggcggaga
agttGTGAATCCAAGATGCGGGATGAAGTAGCGAAGTGATAGCAAAGACT
TCACTAACAAGTAAATCATTGAACGGGAATCATTTCGGATGCAGCTCTCT
ATAAAACTCAAGAACgtgtttttgaagaattttatcATACCGTTCAATGT
CAATTCATTGGGTAAATGAAGACTCGGGCGTTGGGCgtacaaaacaaaga
aaaggacATGTAATCATAGCTTTATCAGAAAAAAGAagtttatattattt
attacagaaacaaattattatttttttaattgatatttataattttgata
ttttatatgGAATATTTTTATCATACCCACAAAGCTTAAATTGCTTAAAT
CAGCGCGAAGCTTTCGaaaattaaaatagaaattgcaTCATGGCATTACT
TATTTTGATTTAATAAAATCCAAAATTAATCGTGATTTTGATGAGAGATT
TTAGCATCTTTTTGTGAACAATAATACCGACTTTTTCACGTATTAAttca
aattagattttttagTGCATCAGCAACAATCtcataaaatttagtaaaac
tctcaaaacaaaaaatctactTCAACCCGATGTTTTGATTTAGGAAGCTA
TGCTTTTTAAACTTATTAAGGACTTGAGGTTTTCTGGTTAAGAAAATGTC
CTTAACACGCAGGATTTAGTTTAGACTGGGTAAGAAGAATGAAGTCTTTG
TAAACAAAAACTTATACCGAAAAAAGagcttttaatttaatttataacCC
AAGAACtgtaaaaaagatattttattaATATTGACCGTGTAGTATTTATT
GAatagaacaaaaacaaaaataaaatcata Run BLAST on NCBI protein sequence of unclassified Wnt ligand 9 >TCONS_00056741-protein ID=TCONS_00056741-protein|Name=unclassified Wnt ligand 9|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MIGFGMKTRLAIIYCACVLFSLFGACSNVELKMNDIESMNPYVLCSSIPK
YIKKGTNLKCSMEKQKLTNVYRGIRVAAKECRYQFQMRPWNCSAAFESAP
RITYYPIPETAFLYAINSAGIAYSLAWACYEGKTKDCMCEKQKSVNITTE
TLLKHQANQKSPEQPHIMEDRKCAKHSLQYGIEESMQLLENKHENDIRWR
MDNHNKQAGRLALIDGPINKNRVCSCHGVSGACTISKCTLKLPKFGDVSD
YLMEKYKSAVRMGSNNHGHLIPHRDTLNKKPTENDLVYLQESPSFCSKDK
KYGILGTKDRVCDPKSKGPQGCDVLCCNRGSEKIVEVEKRQCKCKFKYCC
EVKCQTCEKRVELDVCK Run BLAST on NCBI transcript from alignment at scaffold_282:295680..300816+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056741 ID=TCONS_00056741|Name=TCONS_00056741|organism=Clytia hemisphaerica|type=transcript|length=5137bp|location=Sequence derived from alignment at scaffold_282:295680..300816+ (Clytia hemisphaerica)
TATAAAAAGAAAAGCTAAGCATCGTTGTACTCATATTTAAGTAAAAGAGC
ATAGTAGTGCAACGCGAGAGGGTATAAGGGTACTAACACAGTGGGACAGC
GAACCCTACAAAAAAGACTAACCATCAATTGATATTCTCGCATAAAGAAG
TACATACTACATACACAAAAGAAacaacattttgattttgaatacaCACG
ACAGACTGAGTGGACAAGGAAGCTTCATTTTACGTGATACATTTTGAACT
ACAAGGATTATTAGACCAACAAAATAATAATCGAGACGAGACAAAATCTG
AAGAGCTTGAAGGATTTATGTATGGTTTTTTATCGCGCAAGATTACTATC
ACATCTTAAATCTTGATTTTACTATTAACATCATCTTTCGAACCTTAAAA
TctttaaactaaaaaaaatgattGGCTTTGGAATGAAAACGAGGTTGGCA
ATCATCTACTGCGCATGCGTTCTATTCTCTTTATTTGGTGCATGCTCCAA
CGTCGAATTAAAAATGTAAGTCCTGCATGTCTGGTTAAATTTTCATCATA
TTTTTAatacctgtcaaaatttgaccGCAGGTTCGTTTGTATATTATATC
ATTAAGGTTTACATGATTTTGCGTAATTAGCGCACTTTTGTTTGTAATTA
TTTCAGGGATGGTCGTGGTGTTAAATAATAGAATTGACTGAAAGCTGACC
AGGAAAGGGGAGATTAGGCTCATAAAGCACCTTAAAACATCTgatcgaaa
tcatcaaaattcaaatatttttgttttttacagGAACGATATTGAATCAA
TGAACCCATACGTTCTCTGTAGTTCCATTCCAAAATACATCAAGAAAGGA
ACGAATCTCAAATGTTCAATGGAGAAACAAAAATTGACCAACGTTTACCG
TGGTATTCGAGTTGCAGCCAAAGAATGTCGATATCAATTTCAGATGAGAC
CGTGGAATTGTTCAGCTGCTTTCGAATCTGCACCAAGGATCACCTATTAT
CGTGAGTACAGACATTTTTTTGAGTTCTTAAAATCTTTCTCAAACATCGG
CGTAGATACAAGTAAACCAAACTAAAACCATTTGGTAGAATGTGACTAGT
AGGATTTGAGGTTCCTTGCACTTCCCGTGGAACCTgaaaaaaatgtcata
ttttttGGTTTTCTGTAAATCGAAGGCTTTTAGGAAGAATTAATCAAACA
ATACTAAATCACTCCATTGTATCTAAACTTCAAGAAGTGAGACATTTTCG
CGCCGGAATGTTGTTTTTCGTCTAAGCATGAGGACTGAAATCTAATTAAC
CCGGGGATGTTATCGGAATTGCGGCAACAGTAATTCAGTACGaaggaatt
caaaaattttataggAAGGATGTAAGCCCATCTGTACAATTtggtgaaaa
caatcgaaaactcTTCGCCTTAGCGACTATGAAGCAAATAAGCAggaaaa
caacacaaaaaggaGAGAATAGAgaaatagtttgaaaattgaGCAAAATT
TGTTCTATTTCCGCGCAACTAATTTCCCATCTCATTTACtaatttgaaaa
tatgtgaAGTTAAGTGGTAGactaatttcaaattaaaagaaaaattaatt
aagaGTAATTTATGCGATAATTACCCTCATTGATAGAGCGTTTACCAATT
GCCAACAGAAATCCACAACTTAATATCTGTATACACCAAAAGCTTAACAC
TCATATTGAATTCTTAAAACCATACAATTAAAGGGTATCAGCTCAGATAT
AGTTAACCTGTTTCGAAGGATTTAATGATCCTATTATTGGATTAAGCACT
GAGTCAAAATCTTCTACAACTTGTTAAGGAAACTCAACCTTTGATACAAC
TTCTAAATCGTCTCCAATACGGGAAGTCAACAATCGAACTGTGATTCTTC
CCAACTAACCAGATTCCACCAAACCCAAAACCTTCACCGCTTTTATGCCA
GCAAATGATAAGATACAGATGACCTAAACTAGATGCTTGTTAGACTAGTA
ACCCTACTGTGGCGTTCGTAAAACAAGAGGATTAGGGAAATAGGCtattt
ataattgaaaagacATAAACGAATAATAAAGATTATCCTTATTGAGAATT
TTGTAAacagaattttttaaagaatttgaaTATGACCAGCTTAAGCTTAC
ACAGCTAGCCAGCTATAAACATTGCATCGTTTCGCAATAAATTTTTAGTA
AACTTGACACTGAGAATAAGTcagtttaaaaatcaatttgataAAAACTC
TTTATCATATATCTTTAAGATTAATAATCTTAATTCGACATTTCAAGTCA
TGTTTTAAAAACTATAGATTTGAAAtgtatgacgtcatcaaaactggTGT
CAAATACATAAGTACTCCTCCCTTCAGCAGGAAAACTTTGAGAAGCTCAA
AAGTGGGGATCACANATTACGTCATCAAAACTGGCGTCAAATATATAAGT
GCTCCTCCCTTCAGCAGGAAAACTTTGAGAAGCTCAAAAGTGGGGATCAC
AGAATGACCCACCTATAACTTGAAACATCTGTTAACGCTACAAGACgcta
ttagaaaaaaaaatcgaagaaaaaaataagcctgagaaaattttaatgtt
ttatgcTGAGGTTTGCAAAAAATGGTTTGACACACCTGAAAGGCTATATC
CCTGTATCGTATGTAAAATCGATTCATTAAGTATGTCAGAGAGAGGATCA
GCATGAAAATCGCCTCCTCCTTCTAAAGACAGCAGAGCGAGaaaaaaaac
tggaaatttcTCCTACGCAGCAAAATTTCACCCAAATTTGTCACAGTCAG
GCTTTTAAAAATTCATAGTATCATTCATGACCATTTAAGTATAAAAATCA
CATGCTATGTTCAACAGGTCACAGAACTGAGATAAGAAAGTAGCATTTTG
TTGATGAACAGGGATTTATTGACCACCTACAGAGCTTTCTTGTACCTACA
AAAcagatttaaaaacattttggaCAGATTCCAAAATGATTCAATACTCT
AAGCTTTCACTTTAACTAATGGCTAGATTGTACACATTATAACATGTTAT
GTATATTTATCCTCCAAACTAACAAACATTCAATTTCATATTTACAGCTA
TCCCTGAAACTGCATTCTTGTATGCCATCAATTCAGCCGGCATCGCTTAC
TCCTTGGCGTGGGCGTGTTACGAAGGCAAAACAAAAGACTGTATGTGTGA
AAAACAAAAATCGGTAAACATCACAACcgaaacattacttaaacatcaAG
CCAATCAGAAATCCCCGGAACAACCGCATATAATGGAGGACCGTAAATGC
GCGAAACACAGTTTACAATATGGAATTGAAGAATCAATGCAATTGTTGGA
AAACAAACATGAGAACGATATCCGATGGCGAATGGATAACCATAATAAAC
AAGCTGGACGATTGGTGAGTTTCTTTTCCCATAATTCAATGCGCTGAATG
GGATAGGATTCTGGGTAATAAGCAAAGAGTGATACATCTAGTTAAAGGCA
ATATCAGAGAGTTGAGGATATTTCTTTCCTTAGTTCTTAACGAGATGTcg
aaatattttcataattacTTAGAAATTTGTATAACTGCCATATTTTATCA
AACAGGGGTaattaaatattttggttttaagtCCAGCCCAGAAAATTAGA
TTGTTGTTATACAGTCATTGTGGAAATCTAAACAGTTCTCTATCTATCAA
ATTAACTGATGCTAGACGTTCCAGAAATATTGTTTTGTCTAGAAAGTTCA
CGATAGCAAATCTTGTTGGAAATACCAtatataatgatttttttctcgtG
TGTTTAGGCTCTTATCGATGGACCAATCAACAAGAATCGAGTATGCAGCT
GTCACGGTGTATCTGGAGCTTGTACTATTTCAAAATGTACATTGAAATTA
CCGAAATTTGGTGATGTTTCAGATTATCTAATGGAGAAATATAAATCAGC
CGTCCGAATGGGTTCCAATAACCATGGACACTTGATCCCACATCGAGACA
CTTTGAACAAAAAACCAACAGAGAATGATTTAGTCTACTTACAAGAGAGT
CCAAGTTTTTGCTCTAAGGACAAAAAATATGGTATTCTGGGCACCAAAGA
TCGTGTTTGCGACCCGAAGAGTAAAGGACCTCAAGGTTGTGATGTCTTGT
GTTGCAATCGTGGGTCAGAGAAAATTGTAGAAGTTGAAAAACGACAATGT
AAATGTAAGTTTAAGTATTGCTGTGAAGTGAAATGTCAAACATGTGAAAA
ACGAGTAGAATTAGATGTCTGCAAATAGGTGACGAGATTGagtaaagatg
gcggagaagttGTGAATCCAAGATGCGGGATGAAGTAGCGAAGTGATAGC
AAAGACTTCACTAACAAGTAAATCATTGAACGGGAATCATTTCGGATGCA
GCTCTCTATAAAACTCAAGAACgtgtttttgaagaattttatcATACCGT
TCAATGTCAATTCATTGGGTAAATGAAGACTCGGGCGTTGGGCgtacaaa
acaaagaaaaggacATGTAATCATAGCTTTATCAGAAAAAAGAagtttat
attatttattacagaaacaaattattatttttttaattgatatttataat
tttgatattttatatgGAATATTTTTATCATACCCACAAAGCTTAAATTG
CTTAAATCAGCGCGAAGCTTTCGaaaattaaaatagaaattgcaTCATGG
CATTACTTATTTTGATTTAATAAAATCCAAAATTAATCGTGATTTTGATG
AGAGATTTTAGCATCTTTTTGTGAACAATAATACCGACTTTTTCACGTAT
TAAttcaaattagattttttagTGCATCAGCAACAATCtcataaaattta
gtaaaactctcaaaacaaaaaatctactTCAACCCGATGTTTTGATTTAG
GAAGCTATGCTTTTTAAACTTATTAAGGACTTGAGGTTTTCTGGTTAAGA
AAATGTCCTTAACACGCAGGATTTAGTTTAGACTGGGTAAGAAGAATGAA
GTCTTTGTAAACAAAAACTTATACCGAAAAAAGagcttttaatttaattt
ataacCCAAGAACtgtaaaaaagatattttattaATATTGACCGTGTAGT
ATTTATTGAatagaacaaaaacaaaaataaaatcata Coding sequence (CDS) from alignment at scaffold_282:295680..300816+ >TCONS_00056741 ID=TCONS_00056741|Name=TCONS_00056741|organism=Clytia hemisphaerica|type=CDS|length=4416bp|location=Sequence derived from alignment at scaffold_282:295680..300816+ (Clytia hemisphaerica)
atgattGGCTTTGGAATGAAAACGAGGTTGGCAATCATCTACTGCGCATG
CGTTCTATTCTCTTTATTTGGTGCATGCTCCAACGTCGAATTAAAAATGA
ACGATATTGAATCAATGAACCCATACGTTCTCTGTAGTTCCATTCCAAAA
TACATCAAGAAAGGAACGAATCTCAAATGTTCAATGGAGAAACAAAAATT
GACCAACGTTTACCGTGGTATTCGAGTTGCAGCCAAAGAATGTCGATATC
AATTTCAGATGAGACCGTGGAATTGTTCAGCTGCTTTCGAATCTGCACCA
AGGATCACCTATTATCCTATCCCTGAAACTGCATTCTTGTATGCCATCAA
TTCAGCCGGCATCGCTTACTCCTTGGCGTGGGCGTGTTACGAAGGCAAAA
CAAAAGACTGTATGTGTGAAAAACAAAAATCGGTAAACATCACAACcgaa
acattacttaaacatcaAGCCAATCAGAAATCCCCGGAACAACCGCATAT
AATGGAGGACCGTAAATGCGCGAAACACAGTTTACAATATGGAATTGAAG
AATCAATGCAATTGTTGGAAAACAAACATGAGAACGATATCCGATGGCGA
ATGGATAACCATAATAAACAAGCTGGACGATTGGCTCTTATCGATGGACC
AATCAACAAGAATCGAGTATGCAGCTGTCACGGTGTATCTGGAGCTTGTA
CTATTTCAAAATGTACATTGAAATTACCGAAATTTGGTGATGTTTCAGAT
TATCTAATGGAGAAATATAAATCAGCCGTCCGAATGGGTTCCAATAACCA
TGGACACTTGATCCCACATCGAGACACTTTGAACAAAAAACCAACAGAGA
ATGATTTAGTCTACTTACAAGAGAGTCCAAGTTTTTGCTCTAAGGACAAA
AAATATGGTATTCTGGGCACCAAAGATCGTGTTTGCGACCCGAAGAGTAA
AGGACCTCAAGGTTGTGATGTCTTGTGTTGCAATCGTGGGTCAGAGAAAA
TTGTAGAAGTTGAAAAACGACAATGTAAATGTAAGTTTAAGTATTGCTGT
GAAGTGAAATGTCAAACATGTGAAAAACGAGTAGAATTAGATGTCTGCAA
ATAGatgattGGCTTTGGAATGAAAACGAGGTTGGCAATCATCTACTGCG
CATGCGTTCTATTCTCTTTATTTGGTGCATGCTCCAACGTCGAATTAAAA
ATGAACGATATTGAATCAATGAACCCATACGTTCTCTGTAGTTCCATTCC
AAAATACATCAAGAAAGGAACGAATCTCAAATGTTCAATGGAGAAACAAA
AATTGACCAACGTTTACCGTGGTATTCGAGTTGCAGCCAAAGAATGTCGA
TATCAATTTCAGATGAGACCGTGGAATTGTTCAGCTGCTTTCGAATCTGC
ACCAAGGATCACCTATTATCCTATCCCTGAAACTGCATTCTTGTATGCCA
TCAATTCAGCCGGCATCGCTTACTCCTTGGCGTGGGCGTGTTACGAAGGC
AAAACAAAAGACTGTATGTGTGAAAAACAAAAATCGGTAAACATCACAAC
cgaaacattacttaaacatcaAGCCAATCAGAAATCCCCGGAACAACCGC
ATATAATGGAGGACCGTAAATGCGCGAAACACAGTTTACAATATGGAATT
GAAGAATCAATGCAATTGTTGGAAAACAAACATGAGAACGATATCCGATG
GCGAATGGATAACCATAATAAACAAGCTGGACGATTGGCTCTTATCGATG
GACCAATCAACAAGAATCGAGTATGCAGCTGTCACGGTGTATCTGGAGCT
TGTACTATTTCAAAATGTACATTGAAATTACCGAAATTTGGTGATGTTTC
AGATTATCTAATGGAGAAATATAAATCAGCCGTCCGAATGGGTTCCAATA
ACCATGGACACTTGATCCCACATCGAGACACTTTGAACAAAAAACCAACA
GAGAATGATTTAGTCTACTTACAAGAGAGTCCAAGTTTTTGCTCTAAGGA
CAAAAAATATGGTATTCTGGGCACCAAAGATCGTGTTTGCGACCCGAAGA
GTAAAGGACCTCAAGGTTGTGATGTCTTGTGTTGCAATCGTGGGTCAGAG
AAAATTGTAGAAGTTGAAAAACGACAATGTAAATGTAAGTTTAAGTATTG
CTGTGAAGTGAAATGTCAAACATGTGAAAAACGAGTAGAATTAGATGTCT
GCAAATAGatgattGGCTTTGGAATGAAAACGAGGTTGGCAATCATCTAC
TGCGCATGCGTTCTATTCTCTTTATTTGGTGCATGCTCCAACGTCGAATT
AAAAATGAACGATATTGAATCAATGAACCCATACGTTCTCTGTAGTTCCA
TTCCAAAATACATCAAGAAAGGAACGAATCTCAAATGTTCAATGGAGAAA
CAAAAATTGACCAACGTTTACCGTGGTATTCGAGTTGCAGCCAAAGAATG
TCGATATCAATTTCAGATGAGACCGTGGAATTGTTCAGCTGCTTTCGAAT
CTGCACCAAGGATCACCTATTATCCTATCCCTGAAACTGCATTCTTGTAT
GCCATCAATTCAGCCGGCATCGCTTACTCCTTGGCGTGGGCGTGTTACGA
AGGCAAAACAAAAGACTGTATGTGTGAAAAACAAAAATCGGTAAACATCA
CAACcgaaacattacttaaacatcaAGCCAATCAGAAATCCCCGGAACAA
CCGCATATAATGGAGGACCGTAAATGCGCGAAACACAGTTTACAATATGG
AATTGAAGAATCAATGCAATTGTTGGAAAACAAACATGAGAACGATATCC
GATGGCGAATGGATAACCATAATAAACAAGCTGGACGATTGGCTCTTATC
GATGGACCAATCAACAAGAATCGAGTATGCAGCTGTCACGGTGTATCTGG
AGCTTGTACTATTTCAAAATGTACATTGAAATTACCGAAATTTGGTGATG
TTTCAGATTATCTAATGGAGAAATATAAATCAGCCGTCCGAATGGGTTCC
AATAACCATGGACACTTGATCCCACATCGAGACACTTTGAACAAAAAACC
AACAGAGAATGATTTAGTCTACTTACAAGAGAGTCCAAGTTTTTGCTCTA
AGGACAAAAAATATGGTATTCTGGGCACCAAAGATCGTGTTTGCGACCCG
AAGAGTAAAGGACCTCAAGGTTGTGATGTCTTGTGTTGCAATCGTGGGTC
AGAGAAAATTGTAGAAGTTGAAAAACGACAATGTAAATGTAAGTTTAAGT
ATTGCTGTGAAGTGAAATGTCAAACATGTGAAAAACGAGTAGAATTAGAT
GTCTGCAAATAGatgattGGCTTTGGAATGAAAACGAGGTTGGCAATCAT
CTACTGCGCATGCGTTCTATTCTCTTTATTTGGTGCATGCTCCAACGTCG
AATTAAAAATGAACGATATTGAATCAATGAACCCATACGTTCTCTGTAGT
TCCATTCCAAAATACATCAAGAAAGGAACGAATCTCAAATGTTCAATGGA
GAAACAAAAATTGACCAACGTTTACCGTGGTATTCGAGTTGCAGCCAAAG
AATGTCGATATCAATTTCAGATGAGACCGTGGAATTGTTCAGCTGCTTTC
GAATCTGCACCAAGGATCACCTATTATCCTATCCCTGAAACTGCATTCTT
GTATGCCATCAATTCAGCCGGCATCGCTTACTCCTTGGCGTGGGCGTGTT
ACGAAGGCAAAACAAAAGACTGTATGTGTGAAAAACAAAAATCGGTAAAC
ATCACAACcgaaacattacttaaacatcaAGCCAATCAGAAATCCCCGGA
ACAACCGCATATAATGGAGGACCGTAAATGCGCGAAACACAGTTTACAAT
ATGGAATTGAAGAATCAATGCAATTGTTGGAAAACAAACATGAGAACGAT
ATCCGATGGCGAATGGATAACCATAATAAACAAGCTGGACGATTGGCTCT
TATCGATGGACCAATCAACAAGAATCGAGTATGCAGCTGTCACGGTGTAT
CTGGAGCTTGTACTATTTCAAAATGTACATTGAAATTACCGAAATTTGGT
GATGTTTCAGATTATCTAATGGAGAAATATAAATCAGCCGTCCGAATGGG
TTCCAATAACCATGGACACTTGATCCCACATCGAGACACTTTGAACAAAA
AACCAACAGAGAATGATTTAGTCTACTTACAAGAGAGTCCAAGTTTTTGC
TCTAAGGACAAAAAATATGGTATTCTGGGCACCAAAGATCGTGTTTGCGA
CCCGAAGAGTAAAGGACCTCAAGGTTGTGATGTCTTGTGTTGCAATCGTG
GGTCAGAGAAAATTGTAGAAGTTGAAAAACGACAATGTAAATGTAAGTTT
AAGTATTGCTGTGAAGTGAAATGTCAAACATGTGAAAAACGAGTAGAATT
AGATGTCTGCAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056741-exon-scaffold_282-1491911889:295680..296194 | TCONS_00056741-exon-scaffold_282-1491911889:295680..296194 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1510915933:295680..296194 | TCONS_00056741-exon-scaffold_282-1510915933:295680..296194 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1575043694:295680..296194 | TCONS_00056741-exon-scaffold_282-1575043694:295680..296194 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1491911889:296463..296680 | TCONS_00056741-exon-scaffold_282-1491911889:296463..296680 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1510915933:296463..296680 | TCONS_00056741-exon-scaffold_282-1510915933:296463..296680 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1575043694:296463..296680 | TCONS_00056741-exon-scaffold_282-1575043694:296463..296680 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1491911889:298777..299093 | TCONS_00056741-exon-scaffold_282-1491911889:298777..299093 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1510915933:298777..299093 | TCONS_00056741-exon-scaffold_282-1510915933:298777..299093 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1575043694:298777..299093 | TCONS_00056741-exon-scaffold_282-1575043694:298777..299093 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1491911889:299487..300816 | TCONS_00056741-exon-scaffold_282-1491911889:299487..300816 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1510915933:299487..300816 | TCONS_00056741-exon-scaffold_282-1510915933:299487..300816 | Clytia hemisphaerica | exon |
| TCONS_00056741-exon-scaffold_282-1575043694:299487..300816 | TCONS_00056741-exon-scaffold_282-1575043694:299487..300816 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:295680..300816 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005817 | Wnt |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005102 | receptor binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
| GO:0016055 | Wnt signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007275 |
multicellular organism development |
| biological_process |
GO:0016055 |
Wnt signaling pathway |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005102 |
receptor binding |
Blast
BLAST of TCONS_00056741 vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4) HSP 1 Score: 191.045 bits (484), Expect = 1.003e-53 Identity = 123/367 (33.51%), Postives = 199/367 (54.22%), Query Frame = 1
Query: 469 VLFSLFGACSNVEL---KMNDIESMNPYVLCSSIPKYIKKGTNLKCSMEKQKLTNVYRGIRVAAKECRYQFQMRPWNCSAAFESAP---RITYYPIPETAFLYAINSAGIAYSLAWACYEGKTKDCMCEKQKSVNITTETLLKHQANQKSPEQPHIMEDRKCAKHSLQYGIEESMQLLE----NKHENDIRWRMDNHNKQAGRLALIDGPINKNRV-CSCHGVSGACTISKCTLKLPKFGDVSDYLMEKYKSAV-----RMGSNNHGHLIPHRDTLNKKPTENDLVYLQESPSFCSKDKKYGILGTKDRVCDPKSKGPQGCDVLCCNRGSEKI-VEVEKRQCKCKFKYCCEVKCQTCEKRVELDVCK 1518
++F++F A ++ L K++ + S++ C + I++ + C + + +V RG ++A +EC+YQF+ R WNCS +S P ++ E AF+YAI+SAG+A+++ AC G+ + C C++ +V+ + P + C+ + + YG+ S ++ +K + R M+ HN +AGR A++ RV C CHGVSG+C + C +P F V L EK+ A R+GS+ L+P R+ K T+ DLVYL+ SP FC +D + G+LGT+ R C+ SK GC++LCC RG VE+ +R C CKF +CC VKC+ C++ VEL C+
Sbjct: 13 LVFAVFSAAASNWLYLAKLSSVGSISEEETCEKLKGLIQRQVQM-CKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCST-LDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDR--TVHGVS---------------PQGFQWSGCSDN-IAYGVAFSQSFVDVRERSKGASSSRALMNLHNNEAGRKAIL----THMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHALKEKFDGATEVEPRRVGSSRA--LVP-RNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGRTCNKTSKAIDGCELLCCGRGFHTAQVELAER-CSCKFHWCCFVKCRQCQRLVELHTCR 351
The following BLAST results are available for this feature:
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