TCONS_00056813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056813
Unique NameTCONS_00056813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056813 ID=TCONS_00056813|Name=TCONS_00056813|organism=Clytia hemisphaerica|type=transcript|length=1713bp
ctacaaaatttctttaaatatttcttacaGATGGAAGAACAAATTATAAT
TGGGAATGTCGCTATCTTAGATGTCATCAGAAATATCGAAGAACAATACC
AACGACTGTTACGACTCTTAATACCGGGTTACAAATCGGGTGATTCTATT
ACGCAATCGGATTGGTTAAATATTCCATTATCTGTGCGACAGATGATCGC
TAAAAAAGTATCAAGCGATGATATCATCATGGAGAATATGATAAAAGCCT
GGAAACGGATGAATTATTTCAAAGATAAGTCTGGGGACGACTGGAAAAAT
TCATATAAACACAACCCGTCGCGTGTTATCCAAAATAACCAGCTATGGTG
TAATTTAACTATACCAACGTGTGGAAAGGGCACAGAGTTAAGGCATGGTT
TATATCATGAGAAAGATTGGCAGAACAGTTATGGATATCACTGCCGAGTG
TGTTTAGACAAAATGTATAAAGACGTGGTAGGGAATTCGAATTGTAAACA
ATGTAGATATCCTAACATCACGGACGAGCTTCGGACTAAATGCTTTGATC
CGTACACTAAAGAGTATTTGAAAATCGATAATGCGATTATGCTTTCTGTA
TCCTGTTTATCGTCCATCACAGCCTTTCTCATTGTTTTgactttcattat
tttcatcagACTTCGTGAAACACCAATGGTTAAGGCAGCCAACAGACCCA
TGACTCTAGTCCAACTCATGTCACATTTTTTGCTCGCAACAGTACCTCAA
GTCCTCTTTTTGGGAGAGCCTACACGCTGGAAATGTATATCAAAACCGAT
AATCGTCGGCCTGTGTTTTACAGCCACTGTTTCTGTCAATTTAGCCAAGA
CACAGAAGCTGCATATTATTTTCAGTTCAAAACTAGTACATACTAATCGA
CAACGAATGGCTATGGGTCTGCTTGAATGGATTATAACCGGAATCGCTTT
GCTTGTGAACACGGCTATAATGATACTGTTGTTCTACACCAGTCAAATAT
CAGTCAAAGATATTTACATCGAAGAACACTATATCCGTCAAATGACTTGC
TCCAACAATAACCAGATTATCATACAAGTTTTTTACGTTTTAGTGTTAGT
TTTAGCCAATGGGATTCAAGCAGTTCGTGCGCGTCATCTACCCTCACATT
TCAAAGAAACAACACATGTTATCTATTCATCCCTTACAACAGTACTACTA
CTGGGAGCTTTATCCGCCATCTACTTCACACAAAAAAGCGCGAAGACACG
CGACGTCATAATGTGGGCTTCTCTACTCACAatgaattttttacattttt
cattgatttatgCGTACAAGGTTTACATCATGCTTTTCAAAAGCCACAAG
AACACATTGGAAGCTTTCCAAGCCAAAAGGAAGTCACGAATTAACAGCAA
GTTTAGTACAATGTCCGTCATAAGCACTCAAACACAATCGTCCGTTATca
aagatagatagatatgaaccctccgaatgcattcgggatgggCCCTATCC
ACGAAGGAGAAGGAATtacggcgctgacagacactgcgacttgacagatg
caagctgccaagccatggcgtatatcatgacactcgaacgacactgaGAA
AGCGATGTTCACGCGAGGTCGAAGCTTATGAGTGTCACGGTAGGTCACAA
TTTCTGTTAAATCAAAGACACTCCAAGTTTTGATCATATGACATTATTTA
CATCAACATCCAC
Run BLAST on NCBI

protein sequence of TCONS_00056813-protein

>TCONS_00056813-protein ID=TCONS_00056813-protein|Name=TCONS_00056813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
LQNFFKYFLQMEEQIIIGNVAILDVIRNIEEQYQRLLRLLIPGYKSGDSI
TQSDWLNIPLSVRQMIAKKVSSDDIIMENMIKAWKRMNYFKDKSGDDWKN
SYKHNPSRVIQNNQLWCNLTIPTCGKGTELRHGLYHEKDWQNSYGYHCRV
CLDKMYKDVVGNSNCKQCRYPNITDELRTKCFDPYTKEYLKIDNAIMLSV
SCLSSITAFLIVLTFIIFIRLRETPMVKAANRPMTLVQLMSHFLLATVPQ
VLFLGEPTRWKCISKPIIVGLCFTATVSVNLAKTQKLHIIFSSKLVHTNR
QRMAMGLLEWIITGIALLVNTAIMILLFYTSQISVKDIYIEEHYIRQMTC
SNNNQIIIQVFYVLVLVLANGIQAVRARHLPSHFKETTHVIYSSLTTVLL
LGALSAIYFTQKSAKTRDVIMWASLLTMNFLHFSLIYAYKVYIMLFKSHK
NTLEAFQAKRKSRINSKFSTMSVISTQTQSSVIKDR
Run BLAST on NCBI

transcript from alignment at scaffold_282:436904..438616

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056813 ID=TCONS_00056813|Name=TCONS_00056813|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at scaffold_282:436904..438616 (Clytia hemisphaerica)
GTGGATGTTGATGTAAATAATGTCATATGATCAAAACTTGGAGTGTCTTT
GATTTAACAGAAATTGTGACCTACCGTGACACTCATAAGCTTCGACCTCG
CGTGAACATCGCTTTCtcagtgtcgttcgagtgtcatgatatacgccatg
gcttggcagcttgcatctgtcaagtcgcagtgtctgtcagcgccgtaATT
CCTTCTCCTTCGTGGATAGGGcccatcccgaatgcattcggagggttcat
atctatctatctttgATAACGGACGATTGTGTTTGAGTGCTTATGACGGA
CATTGTACTAAACTTGCTGTTAATTCGTGACTTCCTTTTGGCTTGGAAAG
CTTCCAATGTGTTCTTGTGGCTTTTGAAAAGCATGATGTAAACCTTGTAC
GcataaatcaatgaaaaatgtaaaaaattcatTGTGAGTAGAGAAGCCCA
CATTATGACGTCGCGTGTCTTCGCGCTTTTTTGTGTGAAGTAGATGGCGG
ATAAAGCTCCCAGTAGTAGTACTGTTGTAAGGGATGAATAGATAACATGT
GTTGTTTCTTTGAAATGTGAGGGTAGATGACGCGCACGAACTGCTTGAAT
CCCATTGGCTAAAACTAACACTAAAACGTAAAAAACTTGTATGATAATCT
GGTTATTGTTGGAGCAAGTCATTTGACGGATATAGTGTTCTTCGATGTAA
ATATCTTTGACTGATATTTGACTGGTGTAGAACAACAGTATCATTATAGC
CGTGTTCACAAGCAAAGCGATTCCGGTTATAATCCATTCAAGCAGACCCA
TAGCCATTCGTTGTCGATTAGTATGTACTAGTTTTGAACTGAAAATAATA
TGCAGCTTCTGTGTCTTGGCTAAATTGACAGAAACAGTGGCTGTAAAACA
CAGGCCGACGATTATCGGTTTTGATATACATTTCCAGCGTGTAGGCTCTC
CCAAAAAGAGGACTTGAGGTACTGTTGCGAGCAAAAAATGTGACATGAGT
TGGACTAGAGTCATGGGTCTGTTGGCTGCCTTAACCATTGGTGTTTCACG
AAGTctgatgaaaataatgaaagtcAAAACAATGAGAAAGGCTGTGATGG
ACGATAAACAGGATACAGAAAGCATAATCGCATTATCGATTTTCAAATAC
TCTTTAGTGTACGGATCAAAGCATTTAGTCCGAAGCTCGTCCGTGATGTT
AGGATATCTACATTGTTTACAATTCGAATTCCCTACCACGTCTTTATACA
TTTTGTCTAAACACACTCGGCAGTGATATCCATAACTGTTCTGCCAATCT
TTCTCATGATATAAACCATGCCTTAACTCTGTGCCCTTTCCACACGTTGG
TATAGTTAAATTACACCATAGCTGGTTATTTTGGATAACACGCGACGGGT
TGTGTTTATATGAATTTTTCCAGTCGTCCCCAGACTTATCTTTGAAATAA
TTCATCCGTTTCCAGGCTTTTATCATATTCTCCATGATGATATCATCGCT
TGATACTTTTTTAGCGATCATCTGTCGCACAGATAATGGAATATTTAACC
AATCCGATTGCGTAATAGAATCACCCGATTTGTAACCCGGTATTAAGAGT
CGTAACAGTCGTTGGTATTGTTCTTCGATATTTCTGATGACATCTAAGAT
AGCGACATTCCCAATTATAATTTGTTCTTCCATCtgtaagaaatatttaa
agaaattttgtag

Coding sequence (CDS) from alignment at scaffold_282:436904..438616

>TCONS_00056813 ID=TCONS_00056813|Name=TCONS_00056813|organism=Clytia hemisphaerica|type=CDS|length=1461bp|location=Sequence derived from alignment at scaffold_282:436904..438616 (Clytia hemisphaerica)
ctatctatctttgATAACGGACGATTGTGTTTGAGTGCTTATGACGGACA
TTGTACTAAACTTGCTGTTAATTCGTGACTTCCTTTTGGCTTGGAAAGCT
TCCAATGTGTTCTTGTGGCTTTTGAAAAGCATGATGTAAACCTTGTACGc
ataaatcaatgaaaaatgtaaaaaattcatTGTGAGTAGAGAAGCCCACA
TTATGACGTCGCGTGTCTTCGCGCTTTTTTGTGTGAAGTAGATGGCGGAT
AAAGCTCCCAGTAGTAGTACTGTTGTAAGGGATGAATAGATAACATGTGT
TGTTTCTTTGAAATGTGAGGGTAGATGACGCGCACGAACTGCTTGAATCC
CATTGGCTAAAACTAACACTAAAACGTAAAAAACTTGTATGATAATCTGG
TTATTGTTGGAGCAAGTCATTTGACGGATATAGTGTTCTTCGATGTAAAT
ATCTTTGACTGATATTTGACTGGTGTAGAACAACAGTATCATTATAGCCG
TGTTCACAAGCAAAGCGATTCCGGTTATAATCCATTCAAGCAGACCCATA
GCCATTCGTTGTCGATTAGTATGTACTAGTTTTGAACTGAAAATAATATG
CAGCTTCTGTGTCTTGGCTAAATTGACAGAAACAGTGGCTGTAAAACACA
GGCCGACGATTATCGGTTTTGATATACATTTCCAGCGTGTAGGCTCTCCC
AAAAAGAGGACTTGAGGTACTGTTGCGAGCAAAAAATGTGACATGAGTTG
GACTAGAGTCATGGGTCTGTTGGCTGCCTTAACCATTGGTGTTTCACGAA
GTctgatgaaaataatgaaagtcAAAACAATGAGAAAGGCTGTGATGGAC
GATAAACAGGATACAGAAAGCATAATCGCATTATCGATTTTCAAATACTC
TTTAGTGTACGGATCAAAGCATTTAGTCCGAAGCTCGTCCGTGATGTTAG
GATATCTACATTGTTTACAATTCGAATTCCCTACCACGTCTTTATACATT
TTGTCTAAACACACTCGGCAGTGATATCCATAACTGTTCTGCCAATCTTT
CTCATGATATAAACCATGCCTTAACTCTGTGCCCTTTCCACACGTTGGTA
TAGTTAAATTACACCATAGCTGGTTATTTTGGATAACACGCGACGGGTTG
TGTTTATATGAATTTTTCCAGTCGTCCCCAGACTTATCTTTGAAATAATT
CATCCGTTTCCAGGCTTTTATCATATTCTCCATGATGATATCATCGCTTG
ATACTTTTTTAGCGATCATCTGTCGCACAGATAATGGAATATTTAACCAA
TCCGATTGCGTAATAGAATCACCCGATTTGTAACCCGGTATTAAGAGTCG
TAACAGTCGTTGGTATTGTTCTTCGATATTTCTGATGACATCTAAGATAG
CGACATTCCCAATTATAATTTGTTCTTCCATCtgtaagaaatatttaaag
aaattttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035791XLOC_035791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056813-exon-scaffold_282-1491911889:436904..438616TCONS_00056813-exon-scaffold_282-1491911889:436904..438616Clytia hemisphaericaexon
TCONS_00056813-exon-scaffold_282-1510915933:436904..438616TCONS_00056813-exon-scaffold_282-1510915933:436904..438616Clytia hemisphaericaexon
TCONS_00056813-exon-scaffold_282-1575043694:436904..438616TCONS_00056813-exon-scaffold_282-1575043694:436904..438616Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056813-proteinTCONS_00056813-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:436904..438616 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0943557	0.138018	0.293794	0.0670645	0.122467	0.10055	0.303273	0.291479	0.159023	0.196976	0.0306687	0.251361	0.454959	0.293263	0.0267891	0	0.354162	0.419252	1.12626	1.04386	0.570178	0.634097	0.0811398	0.147536	0	0.158222	0.0323451	0	0.0785456	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR017978GPCR_3_C
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00056813 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 9.161e-20
Identity = 78/312 (25.00%), Postives = 141/312 (45.19%), Query Frame = 1 
Query:  436 YHCRVCLDKMYKDVVGNSNCKQCRYPNITDELRTKCFDPYTKEYLKIDNAIMLSVSCLSSITAFLIVLTFIIFIRLRETPMVKAANRPMTLVQLMSHFLLATVPQVLFLGEPTRWKCISKPIIVGLCFTATVSVNLAKTQKLHIIFSSKLVHTNRQRMAMGL-LEWIITGIALLVNTAIMILLFYTSQISVKDIYIEEHYIRQMTCSNNNQIIIQ--VFYVLVLVLANGIQAVRARHLPSHFKETTHVIYSSLTTVLLLGALSAIYFTQKSAKTRDVIMWASLLTMNFLHFSLIYAYKVYIMLFKSHKNTLE 1362
            + C  C D  Y D    S C +C     ++E  T C      E+L       ++++  + +  FL      +FI+ R TP+VKA NR ++ + L S     +   + F+GEP  W C  +    G+ F   +S  L KT ++ ++F +K + T+  R   GL L++++  +   +   I ++  YT+  S       E  I  +TC   + + +   + Y  +L       A ++R LP +F E   + +S L   ++  +    Y      K    +   ++L  +F   + I+  K+YI+LFK  +NT+E
Sbjct:  563 FECVECPDGEYSDETDASACNKCPDDFWSNENHTSCIAKEI-EFLSWTEPFGIALTLFAVLGIFLTAFVLGVFIKFRNTPIVKATNRELSYLLLFSLLCCFSS-SLFFIGEPQDWTCRLRQPAFGISFVLCISCILVKTNRVLLVFEAK-IPTSFHRKWWGLNLQFLLVFLCTFMQIVICVIWLYTAPPSSYRNQELEDEIIFITCHEGSLMALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITFSMLIFFIVWISFIPAY-ASTYGKFVSAVEVIAILAASFGLLACIFFNKIYIILFKPSRNTIE 870
The following BLAST results are available for this feature:
BLAST of TCONS_00056813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASR9.161e-2025.00Extracellular calcium-sensing receptor OS=Homo sap... [more]
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