Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056813 ID=TCONS_00056813|Name=TCONS_00056813|organism=Clytia hemisphaerica|type=transcript|length=1713bp ctacaaaatttctttaaatatttcttacaGATGGAAGAACAAATTATAAT TGGGAATGTCGCTATCTTAGATGTCATCAGAAATATCGAAGAACAATACC AACGACTGTTACGACTCTTAATACCGGGTTACAAATCGGGTGATTCTATT ACGCAATCGGATTGGTTAAATATTCCATTATCTGTGCGACAGATGATCGC TAAAAAAGTATCAAGCGATGATATCATCATGGAGAATATGATAAAAGCCT GGAAACGGATGAATTATTTCAAAGATAAGTCTGGGGACGACTGGAAAAAT TCATATAAACACAACCCGTCGCGTGTTATCCAAAATAACCAGCTATGGTG TAATTTAACTATACCAACGTGTGGAAAGGGCACAGAGTTAAGGCATGGTT TATATCATGAGAAAGATTGGCAGAACAGTTATGGATATCACTGCCGAGTG TGTTTAGACAAAATGTATAAAGACGTGGTAGGGAATTCGAATTGTAAACA ATGTAGATATCCTAACATCACGGACGAGCTTCGGACTAAATGCTTTGATC CGTACACTAAAGAGTATTTGAAAATCGATAATGCGATTATGCTTTCTGTA TCCTGTTTATCGTCCATCACAGCCTTTCTCATTGTTTTgactttcattat tttcatcagACTTCGTGAAACACCAATGGTTAAGGCAGCCAACAGACCCA TGACTCTAGTCCAACTCATGTCACATTTTTTGCTCGCAACAGTACCTCAA GTCCTCTTTTTGGGAGAGCCTACACGCTGGAAATGTATATCAAAACCGAT AATCGTCGGCCTGTGTTTTACAGCCACTGTTTCTGTCAATTTAGCCAAGA CACAGAAGCTGCATATTATTTTCAGTTCAAAACTAGTACATACTAATCGA CAACGAATGGCTATGGGTCTGCTTGAATGGATTATAACCGGAATCGCTTT GCTTGTGAACACGGCTATAATGATACTGTTGTTCTACACCAGTCAAATAT CAGTCAAAGATATTTACATCGAAGAACACTATATCCGTCAAATGACTTGC TCCAACAATAACCAGATTATCATACAAGTTTTTTACGTTTTAGTGTTAGT TTTAGCCAATGGGATTCAAGCAGTTCGTGCGCGTCATCTACCCTCACATT TCAAAGAAACAACACATGTTATCTATTCATCCCTTACAACAGTACTACTA CTGGGAGCTTTATCCGCCATCTACTTCACACAAAAAAGCGCGAAGACACG CGACGTCATAATGTGGGCTTCTCTACTCACAatgaattttttacattttt cattgatttatgCGTACAAGGTTTACATCATGCTTTTCAAAAGCCACAAG AACACATTGGAAGCTTTCCAAGCCAAAAGGAAGTCACGAATTAACAGCAA GTTTAGTACAATGTCCGTCATAAGCACTCAAACACAATCGTCCGTTATca aagatagatagatatgaaccctccgaatgcattcgggatgggCCCTATCC ACGAAGGAGAAGGAATtacggcgctgacagacactgcgacttgacagatg caagctgccaagccatggcgtatatcatgacactcgaacgacactgaGAA AGCGATGTTCACGCGAGGTCGAAGCTTATGAGTGTCACGGTAGGTCACAA TTTCTGTTAAATCAAAGACACTCCAAGTTTTGATCATATGACATTATTTA CATCAACATCCAC Run BLAST on NCBI protein sequence of TCONS_00056813-protein >TCONS_00056813-protein ID=TCONS_00056813-protein|Name=TCONS_00056813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
LQNFFKYFLQMEEQIIIGNVAILDVIRNIEEQYQRLLRLLIPGYKSGDSI TQSDWLNIPLSVRQMIAKKVSSDDIIMENMIKAWKRMNYFKDKSGDDWKN SYKHNPSRVIQNNQLWCNLTIPTCGKGTELRHGLYHEKDWQNSYGYHCRV CLDKMYKDVVGNSNCKQCRYPNITDELRTKCFDPYTKEYLKIDNAIMLSV SCLSSITAFLIVLTFIIFIRLRETPMVKAANRPMTLVQLMSHFLLATVPQ VLFLGEPTRWKCISKPIIVGLCFTATVSVNLAKTQKLHIIFSSKLVHTNR QRMAMGLLEWIITGIALLVNTAIMILLFYTSQISVKDIYIEEHYIRQMTC SNNNQIIIQVFYVLVLVLANGIQAVRARHLPSHFKETTHVIYSSLTTVLL LGALSAIYFTQKSAKTRDVIMWASLLTMNFLHFSLIYAYKVYIMLFKSHK NTLEAFQAKRKSRINSKFSTMSVISTQTQSSVIKDR Run BLAST on NCBI transcript from alignment at scaffold_282:436904..438616 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056813 ID=TCONS_00056813|Name=TCONS_00056813|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at scaffold_282:436904..438616 (Clytia hemisphaerica) GTGGATGTTGATGTAAATAATGTCATATGATCAAAACTTGGAGTGTCTTT
GATTTAACAGAAATTGTGACCTACCGTGACACTCATAAGCTTCGACCTCG
CGTGAACATCGCTTTCtcagtgtcgttcgagtgtcatgatatacgccatg
gcttggcagcttgcatctgtcaagtcgcagtgtctgtcagcgccgtaATT
CCTTCTCCTTCGTGGATAGGGcccatcccgaatgcattcggagggttcat
atctatctatctttgATAACGGACGATTGTGTTTGAGTGCTTATGACGGA
CATTGTACTAAACTTGCTGTTAATTCGTGACTTCCTTTTGGCTTGGAAAG
CTTCCAATGTGTTCTTGTGGCTTTTGAAAAGCATGATGTAAACCTTGTAC
GcataaatcaatgaaaaatgtaaaaaattcatTGTGAGTAGAGAAGCCCA
CATTATGACGTCGCGTGTCTTCGCGCTTTTTTGTGTGAAGTAGATGGCGG
ATAAAGCTCCCAGTAGTAGTACTGTTGTAAGGGATGAATAGATAACATGT
GTTGTTTCTTTGAAATGTGAGGGTAGATGACGCGCACGAACTGCTTGAAT
CCCATTGGCTAAAACTAACACTAAAACGTAAAAAACTTGTATGATAATCT
GGTTATTGTTGGAGCAAGTCATTTGACGGATATAGTGTTCTTCGATGTAA
ATATCTTTGACTGATATTTGACTGGTGTAGAACAACAGTATCATTATAGC
CGTGTTCACAAGCAAAGCGATTCCGGTTATAATCCATTCAAGCAGACCCA
TAGCCATTCGTTGTCGATTAGTATGTACTAGTTTTGAACTGAAAATAATA
TGCAGCTTCTGTGTCTTGGCTAAATTGACAGAAACAGTGGCTGTAAAACA
CAGGCCGACGATTATCGGTTTTGATATACATTTCCAGCGTGTAGGCTCTC
CCAAAAAGAGGACTTGAGGTACTGTTGCGAGCAAAAAATGTGACATGAGT
TGGACTAGAGTCATGGGTCTGTTGGCTGCCTTAACCATTGGTGTTTCACG
AAGTctgatgaaaataatgaaagtcAAAACAATGAGAAAGGCTGTGATGG
ACGATAAACAGGATACAGAAAGCATAATCGCATTATCGATTTTCAAATAC
TCTTTAGTGTACGGATCAAAGCATTTAGTCCGAAGCTCGTCCGTGATGTT
AGGATATCTACATTGTTTACAATTCGAATTCCCTACCACGTCTTTATACA
TTTTGTCTAAACACACTCGGCAGTGATATCCATAACTGTTCTGCCAATCT
TTCTCATGATATAAACCATGCCTTAACTCTGTGCCCTTTCCACACGTTGG
TATAGTTAAATTACACCATAGCTGGTTATTTTGGATAACACGCGACGGGT
TGTGTTTATATGAATTTTTCCAGTCGTCCCCAGACTTATCTTTGAAATAA
TTCATCCGTTTCCAGGCTTTTATCATATTCTCCATGATGATATCATCGCT
TGATACTTTTTTAGCGATCATCTGTCGCACAGATAATGGAATATTTAACC
AATCCGATTGCGTAATAGAATCACCCGATTTGTAACCCGGTATTAAGAGT
CGTAACAGTCGTTGGTATTGTTCTTCGATATTTCTGATGACATCTAAGAT
AGCGACATTCCCAATTATAATTTGTTCTTCCATCtgtaagaaatatttaa
agaaattttgtag Coding sequence (CDS) from alignment at scaffold_282:436904..438616 >TCONS_00056813 ID=TCONS_00056813|Name=TCONS_00056813|organism=Clytia hemisphaerica|type=CDS|length=1461bp|location=Sequence derived from alignment at scaffold_282:436904..438616 (Clytia hemisphaerica) ctatctatctttgATAACGGACGATTGTGTTTGAGTGCTTATGACGGACA TTGTACTAAACTTGCTGTTAATTCGTGACTTCCTTTTGGCTTGGAAAGCT TCCAATGTGTTCTTGTGGCTTTTGAAAAGCATGATGTAAACCTTGTACGc ataaatcaatgaaaaatgtaaaaaattcatTGTGAGTAGAGAAGCCCACA TTATGACGTCGCGTGTCTTCGCGCTTTTTTGTGTGAAGTAGATGGCGGAT AAAGCTCCCAGTAGTAGTACTGTTGTAAGGGATGAATAGATAACATGTGT TGTTTCTTTGAAATGTGAGGGTAGATGACGCGCACGAACTGCTTGAATCC CATTGGCTAAAACTAACACTAAAACGTAAAAAACTTGTATGATAATCTGG TTATTGTTGGAGCAAGTCATTTGACGGATATAGTGTTCTTCGATGTAAAT ATCTTTGACTGATATTTGACTGGTGTAGAACAACAGTATCATTATAGCCG TGTTCACAAGCAAAGCGATTCCGGTTATAATCCATTCAAGCAGACCCATA GCCATTCGTTGTCGATTAGTATGTACTAGTTTTGAACTGAAAATAATATG CAGCTTCTGTGTCTTGGCTAAATTGACAGAAACAGTGGCTGTAAAACACA GGCCGACGATTATCGGTTTTGATATACATTTCCAGCGTGTAGGCTCTCCC AAAAAGAGGACTTGAGGTACTGTTGCGAGCAAAAAATGTGACATGAGTTG GACTAGAGTCATGGGTCTGTTGGCTGCCTTAACCATTGGTGTTTCACGAA GTctgatgaaaataatgaaagtcAAAACAATGAGAAAGGCTGTGATGGAC GATAAACAGGATACAGAAAGCATAATCGCATTATCGATTTTCAAATACTC TTTAGTGTACGGATCAAAGCATTTAGTCCGAAGCTCGTCCGTGATGTTAG GATATCTACATTGTTTACAATTCGAATTCCCTACCACGTCTTTATACATT TTGTCTAAACACACTCGGCAGTGATATCCATAACTGTTCTGCCAATCTTT CTCATGATATAAACCATGCCTTAACTCTGTGCCCTTTCCACACGTTGGTA TAGTTAAATTACACCATAGCTGGTTATTTTGGATAACACGCGACGGGTTG TGTTTATATGAATTTTTCCAGTCGTCCCCAGACTTATCTTTGAAATAATT CATCCGTTTCCAGGCTTTTATCATATTCTCCATGATGATATCATCGCTTG ATACTTTTTTAGCGATCATCTGTCGCACAGATAATGGAATATTTAACCAA TCCGATTGCGTAATAGAATCACCCGATTTGTAACCCGGTATTAAGAGTCG TAACAGTCGTTGGTATTGTTCTTCGATATTTCTGATGACATCTAAGATAG CGACATTCCCAATTATAATTTGTTCTTCCATCtgtaagaaatatttaaag aaattttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056813-exon-scaffold_282-1491911889:436904..438616 | TCONS_00056813-exon-scaffold_282-1491911889:436904..438616 | Clytia hemisphaerica | exon |
TCONS_00056813-exon-scaffold_282-1510915933:436904..438616 | TCONS_00056813-exon-scaffold_282-1510915933:436904..438616 | Clytia hemisphaerica | exon |
TCONS_00056813-exon-scaffold_282-1575043694:436904..438616 | TCONS_00056813-exon-scaffold_282-1575043694:436904..438616 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_282 | supercontig | scaffold_282:436904..438616 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00056813 vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 9.161e-20 Identity = 78/312 (25.00%), Postives = 141/312 (45.19%), Query Frame = 1 Query: 436 YHCRVCLDKMYKDVVGNSNCKQCRYPNITDELRTKCFDPYTKEYLKIDNAIMLSVSCLSSITAFLIVLTFIIFIRLRETPMVKAANRPMTLVQLMSHFLLATVPQVLFLGEPTRWKCISKPIIVGLCFTATVSVNLAKTQKLHIIFSSKLVHTNRQRMAMGL-LEWIITGIALLVNTAIMILLFYTSQISVKDIYIEEHYIRQMTCSNNNQIIIQ--VFYVLVLVLANGIQAVRARHLPSHFKETTHVIYSSLTTVLLLGALSAIYFTQKSAKTRDVIMWASLLTMNFLHFSLIYAYKVYIMLFKSHKNTLE 1362
+ C C D Y D S C +C ++E T C E+L ++++ + + FL +FI+ R TP+VKA NR ++ + L S + + F+GEP W C + G+ F +S L KT ++ ++F +K + T+ R GL L++++ + + I ++ YT+ S E I +TC + + + + Y +L A ++R LP +F E + +S L ++ + Y K + ++L +F + I+ K+YI+LFK +NT+E
Sbjct: 563 FECVECPDGEYSDETDASACNKCPDDFWSNENHTSCIAKEI-EFLSWTEPFGIALTLFAVLGIFLTAFVLGVFIKFRNTPIVKATNRELSYLLLFSLLCCFSS-SLFFIGEPQDWTCRLRQPAFGISFVLCISCILVKTNRVLLVFEAK-IPTSFHRKWWGLNLQFLLVFLCTFMQIVICVIWLYTAPPSSYRNQELEDEIIFITCHEGSLMALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITFSMLIFFIVWISFIPAY-ASTYGKFVSAVEVIAILAASFGLLACIFFNKIYIILFKPSRNTIE 870
The following BLAST results are available for this feature:
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