TCONS_00056971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056971
Unique NameTCONS_00056971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056971 ID=TCONS_00056971|Name=TCONS_00056971|organism=Clytia hemisphaerica|type=transcript|length=888bp
actttattacaattttttctttggaaataaaaaaatttcctaaaaatctt
caattttccgacccttagagagactaatttaaaactttctgatttttccg
acccttagagagNACCAATGCTTGAAGATATAAAACGAAAATtcaatgat
gacgtcacttatcAGggGCGAAATTACATGTTGAAGATCCAGTCAGATCG
AACAGAAATGTTGTACTGGCTCCAACAGGAACGTCGCACGCAACGCATTC
AAGAATTGAACAACAAATTCCAACTGACTCCTTTGTCGACTGTCGATCTC
TCGGCGCCTGTTAATTGATCGCAAATTTTTGATTGCTTTTAGGAGATGTC
TGTATGATGTTACCCGGGACATGGAATCGTGTCCTGTCAAAGAGGGATGA
TCGTAAAATTATTCGAGATCTTGGAATAGGTTTATAATGTATTAAACAAA
GAACACAAAACACAGGAGTATCTAAAGGCCGCTActcactcagcatttta
tggtcggcaGCACATTTTCCCTTTATTTTGTTTGAGCGGAATGAGAAAAG
CGTTCAGCGACCAAAGCGCTCTAGCCGTGCGCCTTGttcgccgaccataa
aatggtgagtgggtagcggccttaATGTTAATTATTTGtacattgatatt
tttaattcgGATAAATTGTAATATATATTGATGATTAGTAGAGTGTACTC
ACGGAgttattattttcttatttataaattatattttaactgtatataac
attttttgatgaTTGATTGAAGAGTGGTTTGTCGTTTTTCACTTGTTTTC
CAATCTTTTCCCAAAATACTTGGCTTACATCATCAAACAACCAAGACAAA
CAAATCAAagagataatcagatggtttgagatctTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_284:1290317..1291477-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056971 ID=TCONS_00056971|Name=TCONS_00056971|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at scaffold_284:1290317..1291477- (Clytia hemisphaerica)
ACTTTATTACAATTTTTTCTTTGGAAATAAAAAAATTTCCTAAAAATCTT CAATTTTCCGACCCTTAGAGAGACTAATTTAAAACTTTCTGATTTTTCCG ACCCTTAGAGAGNACCAATGCTTGAAGATATAAAACGAAAATTCAATGAT GACGTCACTTATCAGGTAAAGCTTGCTTTTGTTGCGTTTGACCAGGCTAA AATATAGTTTGGTTAATAATTGAATAATTTCTTATTGAAATAGTTATTCC TTATTTCTAGCATCTTAAAACTTTGACAATTGAATATTTTTTCGCCATCA TTCCTTCCATTTAATTACAACGTTTTTATAAGACTTCTACCTTCGGATAT GCTTTATTTTTTGGGGGGGTTTAAAAAGGAAGATTGAGAATGATCCTTCT GATATTTAAGTTCCATTTTTGTTCAATTTCAATTTCAGGGGCGAAATTAC ATGTTGAAGATCCAGTCAGATCGAACAGAAATGTTGTACTGGCTCCAACA GGAACGTCGCACGCAACGCATTCAAGAATTGAACAACAAATTCCAACTGA CTCCTTTGTCGACTGTCGATCTCTCGGCGCCTGTTAATTGATCGCAAATT TTTGATTGCTTTTAGGAGATGTCTGTATGATGTTACCCGGGACATGGAAT CGTGTCCTGTCAAAGAGGGATGATCGTAAAATTATTCGAGATCTTGGAAT AGGTTTATAATGTATTAAACAAAGAACACAAAACACAGGAGTATCTAAAG GCCGCTACTCACTCAGCATTTTATGGTCGGCAGCACATTTTCCCTTTATT TTGTTTGAGCGGAATGAGAAAAGCGTTCAGCGACCAAAGCGCTCTAGCCG TGCGCCTTGTTCGCCGACCATAAAATGGTGAGTGGGTAGCGGCCTTAATG TTAATTATTTGTACATTGATATTTTTAATTCGGATAAATTGTAATATATA TTGATGATTAGTAGAGTGTACTCACGGAGTTATTATTTTCTTATTTATAA ATTATATTTTAACTGTATATAACATTTTTTGATGATTGATTGAAGAGTGG TTTGTCGTTTTTCACTTGTTTTCCAATCTTTTCCCAAAATACTTGGCTTA CATCATCAAACAACCAAGACAAACAAATCAAAGAGATAATCAGATGGTTT GAGATCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035877XLOC_035877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056971-exon-scaffold_284-1575043694:1291313..1291477TCONS_00056971-exon-scaffold_284-1575043694:1291313..1291477Clytia hemisphaericaexon
TCONS_00056971-exon-scaffold_284-1575043694:1290317..1291039TCONS_00056971-exon-scaffold_284-1575043694:1290317..1291039Clytia hemisphaericaexon
TCONS_00056971-exon-scaffold_284-1510915933:1291313..1291477TCONS_00056971-exon-scaffold_284-1510915933:1291313..1291477Clytia hemisphaericaexon
TCONS_00056971-exon-scaffold_284-1510915933:1290317..1291039TCONS_00056971-exon-scaffold_284-1510915933:1290317..1291039Clytia hemisphaericaexon
TCONS_00056971-exon-scaffold_284-1491911889:1291313..1291477TCONS_00056971-exon-scaffold_284-1491911889:1291313..1291477Clytia hemisphaericaexon
TCONS_00056971-exon-scaffold_284-1491911889:1290317..1291039TCONS_00056971-exon-scaffold_284-1491911889:1290317..1291039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1290317..1291477 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.45123 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143671 0 0.24837 0 2.23695 1.85385 1.7188 2.03373 1.70198 1.41989 2.45123 1.73925 0.598716 0.890443 0.0784361 0.0765581 0.214924 0.244449 0.517696 0.436794 1.75921 1.41994 0.528769 0.483262 0.968556 1.39045 0.822136 0.826802 0.213708 0.240985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800Sequence
Match NameE-valueIdentityDescription
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