Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057094 ID=TCONS_00057094|Name=TCONS_00057094|organism=Clytia hemisphaerica|type=transcript|length=2561bp cgcccaTATCAGTGCCTGTAGAcaaagagtaaggcctaaaggCCTGGAGC TGTCTACTATGTAGACTAATAAAATGTtgaatttaatttactttttcatt ttttttcacagGGGTAGTGCGGACACGGTCAACTCCACCTTGCATTGATT TGAGCAAAATCTCTGTTGGTGTACCACGATTGGAGCTTTCTGCTTCTGAA GATGAAACTTCTTTGAAACGAACTCCACGGAGGAGGCCACGAAACTCTCT TTCTACAAAGAAAAGACCAAGCGCCGACGCTATCCGCACTCCACCGTTGA GTCCAAGTGAAGGTTCCGATGATACGCCTCGCTTCAGCCCTTCCTCCCTC CGCCCTCCCATTTTAATAACGCGCAACAATCGTGGTTGGGGCTTCACTTT TAAAGCGATTCGAGTTTATATTGGAGATACATCGAAGTATACTATGCAAC ATATGGTGGAGACTGTGGACACACGTGGACCTGCTTTCGAAGTCGGGCTA AAAGAAAACGATTTGATAACACATGTGAACAATGAAGCTATCCAGGGTTA CCAACACGTCGACGTCGTCCGACTCATTTTACGGTCCGGAGAAACAGTCA AACTGACCGTGACCGATATTGAAAGGACGTCAATCCGTACAGGCTCGAAA CGAAAAACAGTCGGAAATCGCGTCCAATCAAGGAAATTACGCGGGAGAAG CCGGAACAGTTCAGTTGAAGATAGTGGACGTAGTTCAGCCGGTGGTGCTA TATCACGGAAATCGGCTATATACCGGAAACTTCGTAAACCGTCCTTACGT AGGAATTCATCTTTAAAACGAGCTAAGAAATCTAACTTGTTCATTCCGGG TGCATCTTTTGACGCCCGTCGTGCAGCAAATGCAATGGAGGGCGGTGATC AAGCCAACGCCTCATCCGCCACTAGTCCGACGGGCGGAGGATCGACATCA CCAAACTCACCCAATACTCATAGCTCAAAAAATGCATTTCTTCATGGGAT GCTTCCGAAGTTGGCTCGTACCGTTGGCGCGCATTCCCGGCGTCGCTCCA TTTCCTGCATTCCGGTTTCGCCATTGGCACGCACTCCTTCTATAGGGGCT GCTTCTGTACGAAGTCCTTCTCCCTTAGCAACTAAAAATGGTGGCACAGT CATGTCACCAACGAACAATTTTACGAGACCGAAATCATCGACAATGACAC CCGGTTCACCATTACTACGGCGTGCTTTATCGCCGGATAGACTAAATGCG CCGGTACAGTTCGAAGACTTAGTGAATAGTAGAGATGGAACGCTTCTCGT TCCTGCAAATGAAACAGGGGTGGACCGTAGACTGAATAGAAGTCAATCAA TGAAAGAGAATAAAAGGAAAAAACATCGGAGGTAGTCAAACGCCCCTGTA CCGCCCTTATTCTTAAGGTTGCATATCTCAAGTTGTCACTGGAAAGTTTT TCGACGCAATTGTAAATTGATAGGATACATCGCACCATTGTTTGTATATA TGAAAGCGGAAGGAAGtattcgttggaaagatatcaaAGAGAACAGATAG GGGAATGATTTTTTGGAGCTCTCCGGTGACCGTACTGTACATACCGAATA TAATTTTTTGCTACCgaaattgttttttatatttattgaaaaaaaatcgt gtGTTGTGTCGCGGAGCATACGTCTAAACAAAGCTTTTGTTTACAAATTG ATGAGAGAAATACACTTTGTCACAGAGTTGAAATGACTTCGGACGAATAT ATTGTGTGGCAATCAGCCAAGCAGTTCCTTGCCCTTGATTGAGGAATTTA CGAAGACTTTGAACGAAATGCAAAACGACAATAGCGTCTACCCTGTTTCG CGATGAGTGGTTGAGACAAAGCACAATACCGTAAACCCTGTGATCTTGGA TTGGATGTCTGATTTCTAAGATGTTATCTGTGACTGAGCAGTGATCATCG AGATACAAATATTGCACTAACATCCTACGAGGAGTGATATTGTAAAGCAG TTTACCGCCCTTGAGGTACTTCCACCCTCTGGGCGGAATATAGAAGTCAT CCCCATTTCTTAACTTATCTACGCATACATactgtaaaaagtaattcaag AATTATGCACCCCTGTATCGCTTAATCGAATAAAAACGAATATCTCAGTC TGGATATGAAAGTGTGGTTATATTATTGATAATATTGCATGTCGGTTAAT TAGAGTCGTATCTTGATCGGGTACCATGCTACCGTTAGTTgctctaatgt cgacatccatCTTCTTATTTCGGCACACTTTTTTCTgatcgctaagcaaa gaaaaatagtttccatcagcgattccgaccttcatattattcctatctct taAGAAAGGTGTCGATATTAAACCGACTTACGGTTTTTGACTGTCAACTG CTGATTGGTTTAATCTTAAATCTACTTCATCCAGAGTTTCTTTATCATCT TTAAAAGTTCAATGTTCAGTCCACATTTTGTTTGCTTTACCCTTCTTCAA TCATTACTTCTAAAAAACCGAACTTACCGTACTTTCTTCTCAGCTGCCTA GTAAAcgcccc Run BLAST on NCBI protein sequence of TCONS_00057094-protein >TCONS_00057094-protein ID=TCONS_00057094-protein|Name=TCONS_00057094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MQHMVETVDTRGPAFEVGLKENDLITHVNNEAIQGYQHVDVVRLILRSGE TVKLTVTDIERTSIRTGSKRKTVGNRVQSRKLRGRSRNSSVEDSGRSSAG GAISRKSAIYRKLRKPSLRRNSSLKRAKKSNLFIPGASFDARRAANAMEG GDQANASSATSPTGGGSTSPNSPNTHSSKNAFLHGMLPKLARTVGAHSRR RSISCIPVSPLARTPSIGAASVRSPSPLATKNGGTVMSPTNNFTRPKSST MTPGSPLLRRALSPDRLNAPVQFEDLVNSRDGTLLVPANETGVDRRLNRS QSMKENKRKKHRR Run BLAST on NCBI transcript from alignment at scaffold_285:30833..34171- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057094 ID=TCONS_00057094|Name=TCONS_00057094|organism=Clytia hemisphaerica|type=transcript|length=3339bp|location=Sequence derived from alignment at scaffold_285:30833..34171- (Clytia hemisphaerica) CGCCCATATCAGTGCCTGTAGACAAAGAGTAAGGCCTAAAGGCCTGGAGC
TGTCTACTATGTAGACTAATAAAATGTTGAATTTAATTTACTTTTTCATT
TTTTTTCACAGGGGTAGTGCGGACACGGTCAACTCCACCTTGCATTGATT
TGAGCAAAATCTCTGTTGGTGTACCACGATTGGAGCTTTCTGGTGAGTGA
GAATATACTCTGATGATTGAGTGGTCTTGGTTAACACTGACAAGTAGTAT
TTATGGGGTTTTTGTTTTATTTTCTCATTCTAAGGTCCCTTTGTGCCGAT
CTTTTCATTTTTCGATATAGCCAGTCATACGTCCTGGATGATCATATAGG
TCATATAGGTAAGTAAAAAACTTTTTTACACGAAATTCCATTTCTTCTTC
TCCTTTGATATTGTAGCTTCTGAAGATGAAACTTCTTTGAAACGAACTCC
ACGGAGGAGGCCACGAAACTCTCTTTCTACAAAGAAAAGACCAAGCGCCG
ACGCTATCCGCACTCCACCGTTGAGTCCAAGTGAAGGTTCCGATGATACG
CCTCGCTTCAGCCCTTCCTCCCTCCGCCCTCCCATTTTAATAACGCGCAA
CAATCGTGGTTGGGGCTTCACTTTTAAAGCGATTCGAGTTTATATTGGAG
ATACATCGAAGTATACTATGCAACATATGGTGGAGGTAATCAATTTGTTT
TCGTGTGTTATGGAGATAGATTTAATCACTTGTCAATTCATCAGATAACC
ATAACATCTGAAGGAGACTGGGTTAATAATTTCAAATCATCAGGCTCAGT
ACGTTAATGGCCTTGATCTTCGTTCAAATTTTACTTCTTTCTAGATCTTC
GTGTAATTGGGTTTCCTACTTTTCTATCTAACTGAAGTTACGTTTCTTCT
AAATTTAGACTGTGGACACACGTGGACCTGCTTTCGAAGTCGGGCTAAAA
GAAAACGATTTGATAACACATGTGAACAATGAAGCTATCCAGGGTTACCA
ACACGTCGACGTCGTCCGACTCATTTTACGGTCCGGAGAAACAGTCAAAC
TGACCGTGACCGATATTGAAAGGACGTCAATCCGTACAGGCTCGAAACGA
AAAACAGTCGGAAATCGCGTCCAATCAAGGAAATTACGCGGGAGAAGCCG
GAACAGTTCAGTTGAAGATAGTGGACGTAGTTCAGCCGGTGGTGCTATAT
CACGGAAATCGGCTATATACCGGAAACTTCGTAAACCGTCCTTACGTAGG
AATTCATCTTTAAAACGAGCTAAGAAATCTAACTTGTTCATTCCGGGTGC
ATCTTTTGACGCCCGTCGTGCAGCAAATGCAATGGAGGGCGGTGATCAAG
CCAACGCCTCATCCGCCACTAGTCCGACGGGCGGAGGATCGACATCACCA
AACTCACCCAATACTCATAGCTCAAAAAATGGTAAGGTTTTGGCATTTTG
ATTATTTTCGTTTCAAATAAATACTTTTTAAACAAACTTACCATTAACTT
AACTTACCATTTGCTTAAAGCTGTTAAAATTTATTTGAATTCTTTAGTTT
TGAAAACAATAACATATTTTCTTAAAGATCAATCCTCTTAAAAGCATTTG
AATTAAAGTTAGGTCTATGAATGATTGCAATCCGTTGCAAGTCTCTTATT
ACGCTGATATGGTGTTCATATTGTAGCAAAAAACGTTCTTAAAGCGAACG
GACTCCAGGCCAAGACGTTTCACTTTTCTAAATCATTTCTCATATTATCC
TTCTCATCTTAGCATTTCTTCATGGGATGCTTCCGAAGTTGGCTCGTACC
GTTGGCGCGCATTCCCGGCGTCGCTCCATTTCCTGCATTCCGGTTTCGCC
ATTGGCACGCACTCCTTCTATAGGGGCTGCTTCTGTACGAAGTCCTTCTC
CCTTAGCAACTAAAAATGGTGGCACAGTCATGTCACCAACGAACAATTTT
ACGAGACCGAAATCATCGACAATGACACCCGGTTCACCATTACTACGGCG
TGCTTTATCGCCGGATAGACTAAATGCGCCGGTACAGTTCGAAGACTTAG
TGAATAGTAGAGATGGAACGCTTCTCGTTCCTGCAAATGAAACAGGGGTG
GACCGTAGACTGAATAGAAGTCAATCAATGAAAGAGAATAAAAGGAAAAA
ACATCGGAGGTAGTCAAACGCCCCTGTACCGCCCTTATTCTTAAGGTTGC
ATATCTCAAGTTGTCACTGGAAAGTTTTTCGACGCAATTGTAAATTGATA
GGATACATCGCACCATTGTTTGTATATATGAAAGCGGAAGGAAGTATTCG
TTGGAAAGATATCAAAGAGAACAGATAGGGGAATGATTTTTTGGAGCTCT
CCGGTGACCGTACTGTACATACCGAATATAATTTTTTGCTACCGAAATTG
TTTTTTATATTTATTGAAAAAAAATCGTGTGTTGTGTCGCGGAGCATACG
TCTAAACAAAGCTTTTGTTTACAAATTGATGAGAGAAATACACTTTGTCA
CAGAGTTGAAATGACTTCGGACGAATATATTGTGTGGCAATCAGCCAAGC
AGTTCCTTGCCCTTGATTGAGGAATTTACGAAGACTTTGAACGAAATGCA
AAACGACAATAGCGTCTACCCTGTTTCGCGATGAGTGGTTGAGACAAAGC
ACAATACCGTAAACCCTGTGATCTTGGATTGGATGTCTGATTTCTAAGAT
GTTATCTGTGACTGAGCAGTGATCATCGAGATACAAATATTGCACTAACA
TCCTACGAGGAGTGATATTGTAAAGCAGTTTACCGCCCTTGAGGTACTTC
CACCCTCTGGGCGGAATATAGAAGTCATCCCCATTTCTTAACTTATCTAC
GCATACATACTGTAAAAAGTAATTCAAGAATTATGCACCCCTGTATCGCT
TAATCGAATAAAAACGAATATCTCAGTCTGGATATGAAAGTGTGGTTATA
TTATTGATAATATTGCATGTCGGTTAATTAGAGTCGTATCTTGATCGGGT
ACCATGCTACCGTTAGTTGCTCTAATGTCGACATCCATCTTCTTATTTCG
GCACACTTTTTTCTGATCGCTAAGCAAAGAAAAATAGTTTCCATCAGCGA
TTCCGACCTTCATATTATTCCTATCTCTTAAGAAAGGTGTCGATATTAAA
CCGACTTACGGTTTTTGACTGTCAACTGCTGATTGGTTTAATCTTAAATC
TACTTCATCCAGAGTTTCTTTATCATCTTTAAAAGTTCAATGTTCAGTCC
ACATTTTGTTTGCTTTACCCTTCTTCAATCATTACTTCTAAAAAACCGAA
CTTACCGTACTTTCTTCTCAGCTGCCTAGTAAACGCCCC Coding sequence (CDS) from alignment at scaffold_285:30833..34171- >TCONS_00057094 ID=TCONS_00057094|Name=TCONS_00057094|organism=Clytia hemisphaerica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_285:30833..34171- (Clytia hemisphaerica) CATTTCTTCATGGGATGCTTCCGAAGTTGGCTCGTACCGTTGGCGCGCAT TCCCGGCGTCGCTCCATTTCCTGCATTCCGGTTTCGCCATTGGCACGCAC TCCTTCTATAGGGGCTGCTTCTGTACGAAGTCCTTCTCCCTTAGCAACTA AAAATGGTGGCACAGTCATGTCACCAACGAACAATTTTACGAGACCGAAA TCATCGACAATGACACCCGGTTCACCATTACTACGGCGTGCTTTATCGCC GGATAGACTAAATGCGCCGGTACAGTTCGAAGACTTAGTGAATAGTAGAG ATGGAACGCTTCTCGTTCCTGCAAATGAAACAGGGGTGGACCGTAGACTG AATAGAAGTCAATCAATGAAAGAGAATAAAAGGAAAAAACATCGGAGGTA GACTGTGGACACACGTGGACCTGCTTTCGAAGTCGGGCTAAAAGAAAACG ATTTGATAACACATGTGAACAATGAAGCTATCCAGGGTTACCAACACGTC GACGTCGTCCGACTCATTTTACGGTCCGGAGAAACAGTCAAACTGACCGT GACCGATATTGAAAGGACGTCAATCCGTACAGGCTCGAAACGAAAAACAG TCGGAAATCGCGTCCAATCAAGGAAATTACGCGGGAGAAGCCGGAACAGT TCAGTTGAAGATAGTGGACGTAGTTCAGCCGGTGGTGCTATATCACGGAA ATCGGCTATATACCGGAAACTTCGTAAACCGTCCTTACGTAGGAATTCAT CTTTAAAACGAGCTAAGAAATCTAACTTGTTCATTCCGGGTGCATCTTTT GACGCCCGTCGTGCAGCAAATGCAATGGAGGGCGGTGATCAAGCCAACGC CTCATCCGCCACTAGTCCGACGGGCGGAGGATCGACATCACCAAACTCAC CCAATACTCATAGCTCAAAAAATGATGCAACATATGGTGGAGCATTTCTT CATGGGATGCTTCCGAAGTTGGCTCGTACCGTTGGCGCGCATTCCCGGCG TCGCTCCATTTCCTGCATTCCGGTTTCGCCATTGGCACGCACTCCTTCTA TAGGGGCTGCTTCTGTACGAAGTCCTTCTCCCTTAGCAACTAAAAATGGT GGCACAGTCATGTCACCAACGAACAATTTTACGAGACCGAAATCATCGAC AATGACACCCGGTTCACCATTACTACGGCGTGCTTTATCGCCGGATAGAC TAAATGCGCCGGTACAGTTCGAAGACTTAGTGAATAGTAGAGATGGAACG CTTCTCGTTCCTGCAAATGAAACAGGGGTGGACCGTAGACTGAATAGAAG TCAATCAATGAAAGAGAATAAAAGGAAAAAACATCGGAGGTAGACTGTGG ACACACGTGGACCTGCTTTCGAAGTCGGGCTAAAAGAAAACGATTTGATA ACACATGTGAACAATGAAGCTATCCAGGGTTACCAACACGTCGACGTCGT CCGACTCATTTTACGGTCCGGAGAAACAGTCAAACTGACCGTGACCGATA TTGAAAGGACGTCAATCCGTACAGGCTCGAAACGAAAAACAGTCGGAAAT CGCGTCCAATCAAGGAAATTACGCGGGAGAAGCCGGAACAGTTCAGTTGA AGATAGTGGACGTAGTTCAGCCGGTGGTGCTATATCACGGAAATCGGCTA TATACCGGAAACTTCGTAAACCGTCCTTACGTAGGAATTCATCTTTAAAA CGAGCTAAGAAATCTAACTTGTTCATTCCGGGTGCATCTTTTGACGCCCG TCGTGCAGCAAATGCAATGGAGGGCGGTGATCAAGCCAACGCCTCATCCG CCACTAGTCCGACGGGCGGAGGATCGACATCACCAAACTCACCCAATACT CATAGCTCAAAAAATGATGCAACATATGGTGGAGCATTTCTTCATGGGAT GCTTCCGAAGTTGGCTCGTACCGTTGGCGCGCATTCCCGGCGTCGCTCCA TTTCCTGCATTCCGGTTTCGCCATTGGCACGCACTCCTTCTATAGGGGCT GCTTCTGTACGAAGTCCTTCTCCCTTAGCAACTAAAAATGGTGGCACAGT CATGTCACCAACGAACAATTTTACGAGACCGAAATCATCGACAATGACAC CCGGTTCACCATTACTACGGCGTGCTTTATCGCCGGATAGACTAAATGCG CCGGTACAGTTCGAAGACTTAGTGAATAGTAGAGATGGAACGCTTCTCGT TCCTGCAAATGAAACAGGGGTGGACCGTAGACTGAATAGAAGTCAATCAA TGAAAGAGAATAAAAGGAAAAAACATCGGAGGTAGACTGTGGACACACGT GGACCTGCTTTCGAAGTCGGGCTAAAAGAAAACGATTTGATAACACATGT GAACAATGAAGCTATCCAGGGTTACCAACACGTCGACGTCGTCCGACTCA TTTTACGGTCCGGAGAAACAGTCAAACTGACCGTGACCGATATTGAAAGG ACGTCAATCCGTACAGGCTCGAAACGAAAAACAGTCGGAAATCGCGTCCA ATCAAGGAAATTACGCGGGAGAAGCCGGAACAGTTCAGTTGAAGATAGTG GACGTAGTTCAGCCGGTGGTGCTATATCACGGAAATCGGCTATATACCGG AAACTTCGTAAACCGTCCTTACGTAGGAATTCATCTTTAAAACGAGCTAA GAAATCTAACTTGTTCATTCCGGGTGCATCTTTTGACGCCCGTCGTGCAG CAAATGCAATGGAGGGCGGTGATCAAGCCAACGCCTCATCCGCCACTAGT CCGACGGGCGGAGGATCGACATCACCAAACTCACCCAATACTCATAGCTC AAAAAATGATGCAACATATGGTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057094-exon-scaffold_285-1575043694:33980..34171 | TCONS_00057094-exon-scaffold_285-1575043694:33980..34171 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1575043694:33487..33755 | TCONS_00057094-exon-scaffold_285-1575043694:33487..33755 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1575043694:32741..33263 | TCONS_00057094-exon-scaffold_285-1575043694:32741..33263 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1575043694:30833..32409 | TCONS_00057094-exon-scaffold_285-1575043694:30833..32409 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1510915933:33980..34171 | TCONS_00057094-exon-scaffold_285-1510915933:33980..34171 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1510915933:33487..33755 | TCONS_00057094-exon-scaffold_285-1510915933:33487..33755 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1510915933:32741..33263 | TCONS_00057094-exon-scaffold_285-1510915933:32741..33263 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1510915933:30833..32409 | TCONS_00057094-exon-scaffold_285-1510915933:30833..32409 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1491911889:33980..34171 | TCONS_00057094-exon-scaffold_285-1491911889:33980..34171 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1491911889:33487..33755 | TCONS_00057094-exon-scaffold_285-1491911889:33487..33755 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1491911889:32741..33263 | TCONS_00057094-exon-scaffold_285-1491911889:32741..33263 | Clytia hemisphaerica | exon |
TCONS_00057094-exon-scaffold_285-1491911889:30833..32409 | TCONS_00057094-exon-scaffold_285-1491911889:30833..32409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_285 | supercontig | scaffold_285:30833..34171 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR001478 | PDZ |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00057094 vs. Swiss-Prot (Human)
Match: MAST2 (Microtubule-associated serine/threonine-protein kinase 2 OS=Homo sapiens GN=MAST2 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.927e-28 Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 3 Query: 345 SLRPPILITRNNRGWGFTFKAIRVYIGDTSKYTMQHMVETVDTRGPAFEVGLKENDLITHVNNEAIQGYQHVDVVRLILRSGETVKLTVTDIERTSIRTGSKRK 656
S+RPPI+I R + +GFT +AIRVY+GD+ YT+ HMV V+ GPA E GL++ DLITHVN E + G H +VV LIL+SG V ++ T +E TSI+ G RK
Sbjct: 1100 SMRPPIIIHRAGKKYGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKVAISTTPLENTSIKVGPARK 1203
The following BLAST results are available for this feature:
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