TCONS_00057198 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057198
Unique NameTCONS_00057198
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1040

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057198 ID=TCONS_00057198|Name=TCONS_00057198|organism=Clytia hemisphaerica|type=transcript|length=1040bp
AGCCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCA
CACCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCC
TGAAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAA
AAGATTGTTACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTC
GACGGGCAAGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATA
CATGTGGAAAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTG
ATTCTGATCATACAACACAGAACACTACTAAAAACGGTCACTACATGCTT
GCTGAATCATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAG
TAAAGTGTTCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATA
GCATGCATGGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCG
TATTCAGgaaaagaaaataaagtttgGGAAATGATAGGTCCACAAGGTCC
AGGATGGAAAGTAGCTGAAGTAGACATCCCTGAAAAACCTGATAATTACA
ATGAAAGGAATTCTTATATCTTTCTTGACTACAAGATACGTTTCGAAGCA
GAGCGTGGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTTTTAT
TGTTAACTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTGAGCA
CCACCCCAACGACCACCActactacaacaacgaccaccactACTACAGCA
ACGACCACCCCAACTACAGCAACGACCACcccaactacaacaacgaccac
tccaactacaacaacgaccactccaacGACTACAACGACCACCCCAACAA
CTACCACGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCTTTAG
AAGGCTAATACTTAAGAAATGAAATCTAATCTAATCTAAAAGGGAAGGCT
AATCGCCAGAAGTGGATGAAATTTCGCTATAATGTTGTTG
Run BLAST on NCBI

protein sequence of TCONS_00057198-protein

>TCONS_00057198-protein ID=TCONS_00057198-protein|Name=TCONS_00057198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
PQDGHWGRWSSWGECSHQCGEGKEKRTRKCDDPETKNGGKNCPGESVQSK
DCYIKPCALEPDDCLFDGQGMCFWQDKSYDKSYMWKRVTGGTPTPSTGPD
SDHTTQNTTKNGHYMLAESSSPARLGMKASLVSKVFKSTTSVKCLTFFYS
MHGMGIGVLRVFVKFPYSGKENKVWEMIGPQGPGWKVAEVDIPEKPDNYN
ERNSYIFLDYKIRFEAERGHSFQGDIALDDIFIVNSLCSKKKTLVPILST
TPTTTTTTTTTTTTTATTTPTTATTTPTTTTTTPTTTTTTPTTTTTTPTT
TTSTPTTTTGMSDTL
Run BLAST on NCBI

transcript from alignment at scaffold_286:646645..651338+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057198 ID=TCONS_00057198|Name=TCONS_00057198|organism=Clytia hemisphaerica|type=transcript|length=4694bp|location=Sequence derived from alignment at scaffold_286:646645..651338+ (Clytia hemisphaerica)
AGCCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCA
CACCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCC
TGAAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAA
AAGATTGTTACATTAAACCATGCGCATTGGGTATGATATATTCGATGATA
CTGTCAGGTTTTTTTATGATATCGTAGATTTTTTGTGcattagctctagt
ttagacggtcgactttctgccctgtATATTCAATCGTTGAAGTGTGCTAA
AGATACGctgcgacttgacagacgcAAGCTTCCAAGCCCTGGCGTATAAC
ATGACACCtgaacgacactgggagagcgatgTTCACGTGAGGCCAAACCT
AATGAGTGCCATGGCACGTCATTATGCCAGCCACACTCTTGGGCAAAAAG
CGGGCAAAAAGTTGGCAgttatttgcttgaaaaagattgaaagaagacat
tgcacattgacgtcaaaagatggAAATGCATGTACTTTAAACAGCCAATA
TTCTGCCCGCTTtcattcacaattagaatagggaGGACGAAAAGTGGGCC
GTTTATACTGGAACTTAGAACTTCAACCAGCTTAAAAGTCAAGCACAGTG
GAAAAGTCACTTTAACGACGAGAGTTTCCTCTAGAAAAACAACCTTTTTA
AAAGGATATTAGAACCATCCCCAAGATTTGTTCAAATATGTCTAACACCA
TTTCAAAAACCATGTGATAAAACCATATGATACGGTGGAGTCTCTTGAAC
Tagaatctctataactcgaacaagttttatggtctcttcagttaacaatg
ggcttttccagaaaaaaattgaatatggggggggggtggaggataacAAT
TTTCAGTAATTTACCCCCcagacaaagtgacttttgaccccccggacaac
gggttttaccccctggacaagcatcagttgacccccggacaacccaaaat
tacccctggacagagcaaatttaccccccggacaatatatcctccacccc
catgtacggacattttctggaagagcccaatgccTTTTAAAAACGTTACT
CCATAATTCGAAATTcctttaattcgaacaaatttgcgttccccTGTCCG
TGTTATTgagattttgataaattttggaGGTCATCTTCGCTATAACTCGT
AACTGGCCACTTAGCTTGTTGGATTCATTCATTTATTAACGAAGATGTCG
acaatatttgaaatttttagaacCGGATGATTGTTTATTCGACGGGCAAG
GAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATGTGGAAA
AGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTCTGATCA
TACAACACAGAACACTACTAAAAACGGTAAGAAGATTATATTTCAACTga
tatattcacttttttttgaacGATACTTCGATGATTGCATGAGAACGTGA
GATTCCTGAGATGTGACGAAAACTTGAAAACTGATTCAGAACAATCTTAA
CCTTTTGTTTTGGAAACATTTCAATGTAGATAAGATCTTTTAGCCCCTAT
ATCATCTCATGCTCAAGGGTTTCAAGAATATAATTATTCAAATCTGTaaa
tttcggaaaaaaatgAGAACCGCTGAGctccagtcaaaatttactGTTTA
ATatatagttgacgctctctaattcgacgttctactattcgataggctcc
cttattcgatgagaatccaattccccttgaagatcgaattagagagtgcc
AACTGTGTGTTCCAAATGATTCTTTCAGGTCACTACATGCTTGCTGAATC
ATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAAGTGT
TCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCATGCAT
GGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATTCAGG
TACTGTTGAAATTTAGCTACACTGAAACGCCAGTCGGGCTAGACCgatat
cacgcgggaaaagtgaacGTAGGAGTTAGGTgtgcgtaggaagaaatttt
gtcggcggggCAGATTCTAGCCACATACTAAATTTGTAGGTCTTCGGCCA
CTGGAAAACCGTAAGTTAAAGTTTTGAAGGTCTTCGGCCGCTAGCGTAGG
TCTTCGTCCGTTGACGGAAAAAAATCTGCGTCGGCGGGAAGGAGTGAAAG
TTAATTAGCACCCTCTCACCAACTTccgctcgttctcctacgcagcttcT
ATTTCAACAATCACCCAGCCGCACGCGCTCGTGTTTTTGCTCTCTGAATG
aataattaacagactagtttacTATTTTGGCCATAACTCACGGATGGGGT
TAGTACTCTTGATGACAGATGAGGATAACCCCTAGATTTGAAATAAATAA
GCTCAGCCAGATATCAAtttatattttcgaaaaaattagaCCCTACTAGA
AAAAAAGAACCTGAAAGATAATATTGGTATGTGATAAATTTAGTagattt
tgattaaattttgcgacAAACTCAGACACTGAAAAGAGGGATCCTAACAA
AAGGGGCATATCCCATACCCATCTTCGCCTTAGTGAATCCACAACTCGGC
CAAATCCTCAGAACTAAATTATTATTAATGGGAttttccagaaagaaatt
gaatatgggggtggaggatataacccTTATTGGAGATTTACCCACGGata
ttgtgacttttgacccccggacagcaggtctagccccctggacaagcatc
agttgaccccatgAACATTCAAAAGTTTCCCTCAAATTGAGCAAAATTag
ccccaaacagagcaagtttaccccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNccccaaacagagcaagtttccccccccccc
ggacaaggcaaattttgtagatttttcactacccccgggcACTATATccc
tatatcctccaccccccccatgtaccgacattttctggaagaacccAATA
ACATATTTTAAAATTAAGAAATGGGATTCTTCAATGGTCTATCATATTGG
AGTCttgacatcaattttttaaacatcCATTCGTTTtaggaaaagaaaat
aaagtttgGGAAATGATAGGTCCACAAGGTCCAGGATGGAAAGTAGCTGA
AGTAGACATCCCTGAAAAACCTGATAATTACAATGAAAGGAATTCTTATA
TCTTTCTTGACTACAAGGTATATTCTTTTAAGGTCTTTATCTAATTTTAT
GTCCTTTATGTCctattttcgcgatttttttaattttgattgcGTACAAA
AGTCGCTGAGCACAAAGCAGACAGAGATTAAGTACACAAACATTTTTGCG
TTCTTGGTAAGACCCGACCAATTGAACCGCCGACCTTTTAAATcatatgt
tgaacggtgaaaaagaatgctgCTATTATAtacatgtttcggactcggtc
cgCTCTCAAGGGAATGAAGATAGATATCCTATAGATTACAGTCACTATAA
TTACCTTCCATTAGTTCCATTTATACTTAgacggaaaaatcgtctgagac
gAGAAGTTTAtaaaatgtgatctgtggaggatatcctatttattgaaaca
agtacactcctccataatgctcattttctaaattactcgtctcagacaaa
ttaatcgtTTCAGTATAAATAGAACCATTCTCTTTAAAGATACGTTTCGA
AGCAGAGCGTGGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTT
TTATTGTTAACTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTG
AGCACCACCCCAACGACCACCActactacaacaacgaccaccactACTAC
AGCAACGACCACCCCAACTACAGCAACGACCACcccaactacaacaacga
ccactccaactacaacaacgaccactccaacGACTACAACGACCACCCCA
ACAACTACCACGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCT
TTAGAAGGCTAATACTTAAGAAATGAAATCTAATCTAATCTAAAAGGGAA
GGCTAATCGCCAGAAGTGGATGAAATTTCGCTATAATGTTGTTG

Coding sequence (CDS) from alignment at scaffold_286:646645..651338+

>TCONS_00057198 ID=TCONS_00057198|Name=TCONS_00057198|organism=Clytia hemisphaerica|type=CDS|length=4740bp|location=Sequence derived from alignment at scaffold_286:646645..651338+ (Clytia hemisphaerica)
CCACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCACA
CCAATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCCTG
AAACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAAAA
GATTGTTACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTCGA
CGGGCAAGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACA
TGTGGAAAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGAT
TCTGATCATACAACACAGAACACTACTAAAAACGGTCACTACATGCTTGC
TGAATCATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTA
AAGTGTTCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGC
ATGCATGGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTA
TTCAGgaaaagaaaataaagtttgGGAAATGATAGGTCCACAAGGTCCAG
GATGGAAAGTAGCTGAAGTAGACATCCCTGAAAAACCTGATAATTACAAT
GAAAGGAATTCTTATATCTTTCTTGACTACAAGATACGTTTCGAAGCAGA
GCGTGGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTTTTATTG
TTAACTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTGAGCACC
ACCCCAACGACCACCActactacaacaacgaccaccactACTACAGCAAC
GACCACCCCAACTACAGCAACGACCACcccaactacaacaacgaccactc
caactacaacaacgaccactccaacGACTACAACGACCACCCCAACAACT
ACCACGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCTTTAGCC
ACAAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCACACC
AATGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCCTGAA
ACAAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAAAAGA
TTGTTACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTCGACG
GGCAAGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATG
TGGAAAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTC
TGATCATACAACACAGAACACTACTAAAAACGGTCACTACATGCTTGCTG
AATCATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAA
GTGTTCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCAT
GCATGGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATT
CAGgaaaagaaaataaagtttgGGAAATGATAGGTCCACAAGGTCCAGGA
TGGAAAGTAGCTGAAGTAGACATCCCTGAAAAACCTGATAATTACAATGA
AAGGAATTCTTATATCTTTCTTGACTACAAGATACGTTTCGAAGCAGAGC
GTGGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTTTTATTGTT
AACTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTGAGCACCAC
CCCAACGACCACCActactacaacaacgaccaccactACTACAGCAACGA
CCACCCCAACTACAGCAACGACCACcccaactacaacaacgaccactcca
actacaacaacgaccactccaacGACTACAACGACCACCCCAACAACTAC
CACGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCTTTAGCCAC
AAGATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCACACCAA
TGTGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCCTGAAAC
AAAGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAAAAGATT
GTTACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTCGACGGG
CAAGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATGTG
GAAAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTCTG
ATCATACAACACAGAACACTACTAAAAACGGTCACTACATGCTTGCTGAA
TCATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAAGT
GTTCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCATGC
ATGGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATTCA
GgaaaagaaaataaagtttgGGAAATGATAGGTCCACAAGGTCCAGGATG
GAAAGTAGCTGAAGTAGACATCCCTGAAAAACCTGATAATTACAATGAAA
GGAATTCTTATATCTTTCTTGACTACAAGATACGTTTCGAAGCAGAGCGT
GGACACAGTTTTCAAGGAGACATTGCATTGGATGATATTTTTATTGTTAA
CTCGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTGAGCACCACCC
CAACGACCACCActactacaacaacgaccaccactACTACAGCAACGACC
ACCCCAACTACAGCAACGACCACcccaactacaacaacgaccactccaac
tacaacaacgaccactccaacGACTACAACGACCACCCCAACAACTACCA
CGTCCACCCCAACCACTACTACCGGTATGTCTGATACTCTTTAGCCACAA
GATGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCACACCAATG
TGGAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCCTGAAACAA
AGAATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAAAAGATTGT
TACATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTCGACGGGCA
AGGAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATGTGGA
AAAGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTCTGAT
CATACAACACAGAACACTACTAAAAACGGTCACTACATGCTTGCTGAATC
ATCATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAAGTGT
TCAAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCATGCAT
GGAATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATTCAGg
aaaagaaaataaagtttgGGAAATGATAGGTCCACAAGGTCCAGGATGGA
AAGTAGCTGAAGTAGACATCCCTGAAAAACCTGATAATTACAATGAAAGG
AATTCTTATATCTTTCTTGACTACAAGATACGTTTCGAAGCAGAGCGTGG
ACACAGTTTTCAAGGAGACATTGCATTGGATGATATTTTTATTGTTAACT
CGCTATGTTCCAAGAAAAAAACACTTGTTCCGATACTGAGCACCACCCCA
ACGACCACCActactacaacaacgaccaccactACTACAGCAACGACCAC
CCCAACTACAGCAACGACCACcccaactacaacaacgaccactccaacta
caacaacgaccactccaacGACTACAACGACCACCCCAACAACTACCACG
TCCACCCCAACCACTACTACCGGTATGTCTGATACTCTTTAGCCACAAGA
TGGTCACTGGGGACGATGGTCTTCCTGGGGTGAATGTTCACACCAATGTG
GAGAGGGAAAAGAAAAGCGAACACGAAAATGTGATGATCCTGAAACAAAG
AATGGAGGAAAGAATTGTCCGGGTGAATCTGTTCAATCAAAAGATTGTTA
CATTAAACCATGCGCATTGGaacCGGATGATTGTTTATTCGACGGGCAAG
GAATGTGTTTTTGGCAAGACAAATCATATGATAAATCATACATGTGGAAA
AGAGTTACCGGTGGAACACCGACTCCTTCCACTGGCCCTGATTCTGATCA
TACAACACAGAACACTACTAAAAACGGTCACTACATGCTTGCTGAATCAT
CATCACCCGCCAGACTTGGAATGAAAGCTTCTCTGGTCAGTAAAGTGTTC
AAATCAACAACATCGGTCAAATGTTTAACATTCTTCTATAGCATGCATGG
AATGGGGATTGGAGTTCTCCGTGTTTTTGTCAAGTTTCCGTATTCAGgaa
aagaaaataaagtttgGGAAATGATAGGTCCACAAGGTCCAGGATGGAAA
GTAGCTGAAGTAGACATCCCTGAAAAACCTGATAATTACAATGAAAGGAA
TTCTTATATCTTTCTTGACTACAAGATACGTTTCGAAGCAGAGCGTGGAC
ACAGTTTTCAAGGAGACATTGCATTGGATGATATTTTTATTGTTAACTCG
CTATGTTCCAAGAAAAAAACACTTGTTCCGATACTGAGCACCACCCCAAC
GACCACCActactacaacaacgaccaccactACTACAGCAACGACCACCC
CAACTACAGCAACGACCACcccaactacaacaacgaccactccaactaca
acaacgaccactccaacGACTACAACGACCACCCCAACAACTACCACGTC
CACCCCAACCACTACTACCGGTATGTCTGATACTCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036043XLOC_036043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057198-exon-scaffold_286-1491911889:646645..646824TCONS_00057198-exon-scaffold_286-1491911889:646645..646824Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1510915933:646645..646824TCONS_00057198-exon-scaffold_286-1510915933:646645..646824Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1575043694:646645..646824TCONS_00057198-exon-scaffold_286-1575043694:646645..646824Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1491911889:647915..648070TCONS_00057198-exon-scaffold_286-1491911889:647915..648070Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1510915933:647915..648070TCONS_00057198-exon-scaffold_286-1510915933:647915..648070Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1575043694:647915..648070TCONS_00057198-exon-scaffold_286-1575043694:647915..648070Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1491911889:648473..648643TCONS_00057198-exon-scaffold_286-1491911889:648473..648643Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1510915933:648473..648643TCONS_00057198-exon-scaffold_286-1510915933:648473..648643Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1575043694:648473..648643TCONS_00057198-exon-scaffold_286-1575043694:648473..648643Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1491911889:650334..650461TCONS_00057198-exon-scaffold_286-1491911889:650334..650461Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1510915933:650334..650461TCONS_00057198-exon-scaffold_286-1510915933:650334..650461Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1575043694:650334..650461TCONS_00057198-exon-scaffold_286-1575043694:650334..650461Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1491911889:650934..651338TCONS_00057198-exon-scaffold_286-1491911889:650934..651338Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1510915933:650934..651338TCONS_00057198-exon-scaffold_286-1510915933:650934..651338Clytia hemisphaericaexon
TCONS_00057198-exon-scaffold_286-1575043694:650934..651338TCONS_00057198-exon-scaffold_286-1575043694:650934..651338Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057198-proteinTCONS_00057198-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:646645..651338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.05582	3.16467	3.20265	2.70447	7.82694	5.50495	5.55201	5.98475	2.11115	12.2778	3.68462	1.16651	0	0.382872	0.194618	0.111811	15.385	25.775	0	0.240473	1.31735	1.29249	2.25173	2.00212	0.620263	0.768967	0.183787	0	1.37419	1.28084
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR000884TSP1_rpt
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00057198 vs. Swiss-Prot (Human)
Match: MDGA1 (MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Homo sapiens GN=MDGA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.670e-17
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:  327 TKNGHYMLAESSSPARLGMKASLVSKVFKSTTSVKCLTFFYSMHGMGIGVLRVFVKFPYSGK-ENKVWEMIGPQGPGWKVAEVDI-PEKPDNYNERNSYIFLDYKIRFEAERGHSFQGDIALDDIFIVNSLCSKKKT 731
            T  G+YM  E+S P  LG +A LVS ++ ++    C++FFY M+G  IG L + V+    G  +   W + G +G  W+ A V I P  P             ++I FE  RG  + GDIA+DD+ +    C +K+T
Sbjct:  798 TPEGYYMFIETSRPRELGDRARLVSPLYNASAKFYCVSFFYHMYGKHIGSLNLLVRSRNKGALDTHAWSLSGNKGNVWQQAHVPISPSGP-------------FQIIFEGVRGPGYLGDIAIDDVTLKKGECPRKQT 921
The following BLAST results are available for this feature:
BLAST of TCONS_00057198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDGA14.670e-1734.31MAM domain-containing glycosylphosphatidylinositol... [more]
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