TCONS_00057250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057250
Unique NameTCONS_00057250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057250 ID=TCONS_00057250|Name=TCONS_00057250|organism=Clytia hemisphaerica|type=transcript|length=752bp
gaggtaaacgttgctcgtgacgtaattcataaaaaggtctattttgggta
ttttaacgttttttcaCAATATCTCGGGCGAGAATTATGGTTTCAGTACT
CTTTGGTTTAACTTCCTTCTGTTTTTCACTTCAGGATTTTAGACTCTTGT
ACAGCGTTAATGAAAGCAATccgagaattaattttgaaatccaAAGATCT
TCAGGACGAAATTGTGTCTGAAGGAAGAGGTTCGGCGTCGGTGAAAGACT
TTTACAAACGGCATCATAAATGGACAGAGGGATTACTGTCAGCAGCTAAA
TCGGTTGGTTACGGAGCTACAATTTTAGTAGATGCAGCTGATAAGGTGAT
CGAACGAAAAGGGAAATTCGAAGAGTTGGTTGTTTCGTCACATGAAATTG
CTGCTTCGACCGCACAACTAGTTGCAGCATCTCGAGTGAAAGCACACAAA
ACAAGTACACGACTTCCACCACTCATGACTGCATCCAAAGgagTTGGTGA
GGCAACAGCGGGGGTTGTAGCAGCCGTACGGAGTGGTGCATCTATGACCG
AGGAATCTCaGACCGTTCCTGATTATTCGAAGATGTCTTTAACACAAGCC
AAACGATACGAGATGGACAGCCAGGTCAAAATTTTGGAGTTGGAAGACAA
ATTACAGAAAGAGCGGCAAAATTTGGGACGGTTACGTCAAGCACATTATC
AAATCGCTGTCGAGATGTATGGTGAAGATGCTGTCACCATGGATTAACGC
TG
Run BLAST on NCBI

protein sequence of TCONS_00057250-protein

>TCONS_00057250-protein ID=TCONS_00057250-protein|Name=TCONS_00057250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MKAIRELILKSKDLQDEIVSEGRGSASVKDFYKRHHKWTEGLLSAAKSVG
YGATILVDAADKVIERKGKFEELVVSSHEIAASTAQLVAASRVKAHKTST
RLPPLMTASKGVGEATAGVVAAVRSGASMTEESQTVPDYSKMSLTQAKRY
EMDSQVKILELEDKLQKERQNLGRLRQAHYQIAVEMYGEDAVTMD
Run BLAST on NCBI

transcript from alignment at scaffold_286:392761..403315-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057250 ID=TCONS_00057250|Name=TCONS_00057250|organism=Clytia hemisphaerica|type=transcript|length=10555bp|location=Sequence derived from alignment at scaffold_286:392761..403315- (Clytia hemisphaerica)
GAGGTAAACGTTGCTCGTGACGTAATTCATAAAAAGGTCTATTTTGGGTA
TTTTAACGTTTTTTCACAATATCTCGGGCGAGAATTATGGTTTCAGTACT
CTTTGGTTTAACTTCCTTCTGTTTTTCACTTCAGGATTTTAGACTCTTGT
ACAGCGTTAATGAAAGCAATCCGAGAATTAATTTTGAAATCCAAAGATCT
TCAGGACGAAATTGTGTCTGAAGGAAGAGTAAGTATGTCCAAACATTCCA
TAAGGAATTTAAGGTTACTATACCGTTACGAAGCTGTTTGTTTATGGGTC
TGTGAAAAGGGGGTGTAATCGTGTACTGTTAGTTTCAAGACCTTTCCCCC
AGTAACTGTCTGAACATACTAAGGTTTAATATACAGTAAACTCTCGCTTA
TTTAAACTTTTATTATTCGAACTCGTTTCTAGTCTTCGAATCAACGAGAT
TCAACTGTAATTACGTAAAATCAAAGCTTCGAAACTCTCCCCTTTCACAT
GAGAGCCTGTTTAGAATTTTTATAACTCTTCAATTTTGTGACTTTTAATT
TTCACAGGGTTCGGCGTCGGTGAAAGACTTTTACAAACGGCATCATAAAT
GGACAGAGGGATTACTGTCAGCAGCTAAATCGGTTGGTTACGGAGCTACA
ATTTTAGTGTAAGTTTTCCCCCCTTTCATCCTATCGAGGGGGACGTATGG
GGGACGCGAACATCGAAATACCCACGCATTTTTCTTAGATCACCGTCAAC
ACTGATCAGCATAAATTGCAAAATTCCATATTTTGTTGCCACATGGCATT
TTTGACATCATAACATTTCTTCAAACACCGAAACATCAACGGAGAACACC
AGGCTTAAAACCTATACGCTCTCTACCCCGCCTCCTCTCTCCTTCCTCCG
CTTTCCAATTAACTTGATAGTCAAGGAGCGATACGAAACCATATAACATC
TGAACATGGTCTTAATTAGCCTGTACCAAACTCTCCTTCGCTTGCTGAAA
AGATAACGCGAAGTTCGACGCACGCCAAGTTTTTTTCAAAATATAAAAAA
CCCCTTACATGCTAAGTCTTAATTTTTATTATCTTTTTATCAACAGAGAT
GCAGCTGATAAGGTGATCGAACGAAAAGGGAAATTCGAAGAGTTGGTTGT
TTCGTCACATGAAATTGCTGCTTCGACCGCACAACTAGTTTGTTCATTTA
TACACTATTTTCTTGTTGACCCATTCTATGGAATTATTTTTTGTCTTATA
AACGCGTGTTTTCATTTTCAATCTTTTTCACTTCTGTCAAAAGAAAAGAA
GCTTTAAAGACTGGTGCCTTTAATTCGAGATGTACTTCGGTTGATTGAGG
ATATTTTTTATGATATAAAAAGGAAAAGCGCCTCTAGTATGCTGAAAAAG
CAAAATAAGCAAAAGAATTTCCCAACATTTGTGCGCCCGCGGCACCGAAA
GTCGCCGTTCTTTTATTTGAAAATGCTATGTAAGCAAACGATGAGAGTAT
AAATTATAAATTTTGTCCTTTAAGAAAAAGTGAAAAATTCTTAAATTTTT
TTCTCAACCAGGTTGCAGCATCTCGAGTGAAAGCACACAAAACAAGTACA
CGACTTCCACCACTCATGACTGCATCCAAAGGAGGTAAAAAAAAGATTGA
AAAAAAGTATTTTATTGAACTGGTTTACCATTGGCCATTCTATATAACCG
AAAATTTCCAGGGGATAATCCGAAATTGTTTTCCAGGGGGTCTAAGGGAA
GCTTTCGTATTTTTTCTAGGGAGGTTGAGAATGCTTTTGTGTTATTTTCC
AGTAGAGTGTTTGATTTTAGTTGTTGCAAAATTGAACCTGCGGTTAAGCA
AAAAGTGAGCATTTTAGTTAGAAATTGACCGGTAAAATTGCCATTGATCC
AGATTTTAACTCAAAAACTTTCATTTAAAGTAAAGTACCAAATTTGTCAG
CAATTTTTAAACTCTGGTTTGTAAAATACCAACCAAATAGCAGGCCTACC
TGAAGTTTTACATATCATTTTCAGTTTGTCAACATCTATAACGGGTCAAA
GTTTAAAACTCAATCCTGAAATGTGAGTGAAAATTTCATCTCCTTCAATA
CACTCTTCTCGAGATACATAAACTTAGTGTTGCCCTCGTTCTCAAATACA
TTTGATTGCTATGAAATTCAGCGTTGATCCTTACATATTCAAATCAGTCT
AAATTCCCAAAAGGCAAGTATTAGCTCTCAAACAAAAGAACATTAAATTC
AAAATGTCTCTCGTAAACAACACAATTACCATTATGAATATGTGATTTTA
CAGCAATCCAATCTGTTTGAAAACGAGGCCAACAATAAGTTAATGCATCT
CGAGAAGAGTGTATATGCAGGAAGATTCTTAAAGGGCTGACGTTTACCAG
GCTTTTCAGAAACAAATAGAGGGACAAAAGGATAAGTAATTTTGATTATT
TTTATTCATTATCATTCATAATAATATACGTAATATAAGAAAAAAACCGA
TATTAGAAAAACAAGAAAAAACTGAAAAAAAACTCCTCAAAAAATACCCT
GAAAATGGTGGAAAATACTGCAAATAAATAATTCCAAAAATGAAAAAAAA
GATAAAAAAATTGGAAAAATTATAATAAAAATTGTGCGTTAACTTTCACT
CGATGCGTGACTCAATGGCTTGGCGAGCTCTGTCTTTGGCTCGTTTTCGG
AATAATCGTCGTTTTGCTGTCTTCGTGAGTTTTTTGGGAATGATTTGATC
CCAAAGGTTATTCGAAAGTGATTTTTCGTACAGTTCTGCTGAGTTGCCTT
CATCGTTGTGCTTCAAGTGGCAATCATTAGGTACTTTGTGTGTTTTCTCT
TCTGTGAAAGAATTCTCATAAGTACAGTCAACGTTGCTGCTGAACATTGG
TGTGAAGATATCGACTTTGTTTGGAGCTGTAGAGGCTCTATACCACGCGC
CCTCATTGTAATTACCGTACAATCCAGATGTGTTGACTTCGTTTGTAGTT
TGGACTAAGCGATTCCATACGCTCTGGTTGTTATTACCATACATAAATTC
GAAAGCGTCGACTTTGATTTGTGGTACACCTTGCCGTACGTGCGTTTCTG
GTTTGCGGACAGCATCCATGGCCCGTTGGGTGCTGACCCGCAACTCAGCT
TCTCGTGCGTAGTAAGCATGACGAACTTTGTCTTCGAGTGTCATACGATC
TCTTTGTTGCTGGATTCTTGAGGCGCTTCGTTGCCAACCAATGGGTTTGA
CAGATTCGTTTTGCCGACCGATTGCATCCATTTCGAATGATTCAGATATT
AGATACTATATTTTACTTTGATTAACGTTTACAACTGTTTAATTGCTTGT
CATTCACTGCTTTAACAAACAATGTACTAGCGAAAACTACTTCCGAAAAT
CTGTATCTCGATTGTTATTCAAATATGATATTTGACGTCAATTTCTACGT
AAAAAAAATGGTAAAAAATAGATAACGTAATTTTTAGACAGATAATTTGT
TGAAATATGCGGTGATTTTTGGAAAAGATTAAGTAATGTTCAAAAAGCAT
AACATATTATCATTACACTAGCTCAGCAATTTTTCACAGTAATTCGAACC
TTAATACAAGTATCAAAACCTGGCTTTAATAAATTTTTCACTAATTCATT
TATCCTTATTTTATTTAGTTGGTGAGGCAACAGCGGGGGTTGTAGCAGCC
GTACGGAGTGGTGCATCTATGACCGAGGAATCTCGTAAGTAATGATAACA
TTATTAAAGTGACATGCTCCGAAAAATTTAAAACCTTTTAGACAGCAAAG
GGATTGTTTCCACGAAGGGCCGCTAAAGTTTTTTCAAAGTTATTTTGCTG
AAACTTTTTAATAGTTTTTATTTGGTTAATAGGTAAAGACTGATGGTGAA
TGCGAGGGCAAAATCCCCAAAAAACATTCCTCTGTTTGTTTGTTTGTTTT
CAGAATAGTCTGAACTGGAGCCCAATCCTCTTGTGGAGTTAGTGTTGACA
GGTGTATTTAGTCCACGTTTTTCATTAGAATTTAACAATAATCTTAAATT
TGAGACACAACCTCTATATACAGCCCCTTGTCACACCCGGTAGGATTTTT
TTCAGCCAGTGGGGGTAAAAATAATAGACCAAAACTTGATTGGGATTTAT
GTAACTGCAGGAGAGCCGGACGTGATACTTTACGGTTTCGGACGGTAATA
TATTTTGCTAAAATAGATAAAGGTACAGTTCTTAAGTACAAATCAAACCT
GAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTCGTAAATCTCAGTGAAAAA
TTGATCATTTTCATCATTATTCATGATGTTTTGGACTAGATTTATGAGAA
GTTTGATGCATACTGGCTCTCTAACATGTGGAAAGACTTTGGAGCAATTT
TGGCCATGAATCGTCAGCTGATCGAGTGCTAAAAAATCTTGCATATGCTA
TGGTAAACAAAACCATAAAATTCTGTAGGTGTAACTTGACAATGAAACTT
TCAAACACACATCCATTGGAATTTAAAAGAGAATACTAAAATTACAACAT
TACAGTGAAAATTTGAAAACGATCTGAGTAGTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATTCAATAAAGGATACTAAAACACAATTCCAGTGTAA
ATTTGAACAAGAATGGAGAAATCTTCACAGTTTTATGGCTGAAAATGATC
GTTTTTGGACTTCTTGCCGTATAATTTTTTCATCGCGGCTTGCGACCATT
CCTTTTGATTTTTCAAACCCGACACAGATTTTTTACAAACATATGACTAT
GAGCATTCAGTAAAGGATACTAAAACACAATTCCTGTGAAAATTTGAACA
AGATTGGAGAAATTTTCAGTGTTATGGCTGAAAATGATCGTTTTTGGACT
TTGTTGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTCC
TGTGTAAATTTGAACAAGATCGGAGAAATTTTCACAGTTTTATAACTGAA
AATTATATTTTTTGGACTTTGTCGTAATTTCATTGGCTGGGGCGACCATC
CCTTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGTTTGTGGG
CAACATTCTAACAAAACTAACTCAACAAGCTCATCTTTCACATCTTTGAA
TCTCTTAAGCCGGAGCTTCCAGCGCAGCTGGTTTATTACAAATTTCAATC
TTTTCATAAAATCTCCGATTCCCTCTGTTTGCTCAGACACTTTTTCTGAA
GAGATTACAAACTCTTGATAACACGATACGTCCGTGATTTCGTCATTTCT
TGAACTTTCAAATAGATTCTTAGTTTCAATACCAGCAACGAGCCAACAAG
AAGTTTGTCCAAATTTATAGGAGGCCTTCTGTAAGGAATTACCAACAACA
ATTTTTGGATCGGACAAAGACACAGATTCAAAAACATTCGCGATTCGAAC
ACAAGGGCGACAAACTACGTTAACGCAAGCACGTGACAACTTTTCGACTT
TAGGAACCACTGTTTCAACGGCATGTGGCGAGATATGCTCTGCGATTCTA
ATTTCTGGGAGTGGTACAGCGATGACAGTCTGACGACCTAAAATTCGTTC
TGGAAGCGATTCCAAAATTTTAAGGGCAGCATCAATAAAACTCTTACCGA
ATCGGACTTCAACATGATCATTTGTAAACAGGCTTTCGCAATCGGAATAG
AGTCTTGCGTAGTCGTCTAGAGTTGTCAGCAGTCTTTCTCGTTCACAACC
ATAGGATAATACATTTTGCACAAGGTCTTCCTTTCTGCTATAGATTTTTT
GCATTTGCTGCGTAGAGTTCATGATGATATCAACAAATCGATTTCTTTTC
ACATAAAAGTCTTCTTCTGATAGATTCGTCATCGTGATGAATAAGTCTTA
CGTTACCTTCGTAACAACAACTCGATAACTTTATGCTGGGAGTTATTGAA
CCAACACACCGATTACGTGTAATGTTGCACTGCAAATTCGTGTTTCTCTT
CTTTCAATGGATACTTGTTTACTGGTGCAAGATACCNGTGTCACATAATT
ACGTAATAATTGACAAATAAATAGACAATACACTGACGATCAAATTAACA
TAAAAATATACAAAACAACTGCTATTCGGCAGTTACAATTTATATTCCCA
TGTTTTATACGGCTGGGGATTTGAATTCCATTGTTTTTTGAACCAGAAAA
AACAGTGGGGATGGAAAAAATAGCACAATATTTTTCAGTGAGGATTTGCT
TATCTGATTTTTTCAGCGGGGACAAAATTTAGAGTATAATTTTTCAATGG
GGACGATATTTTGGCCTATTTTGCCAGTGGGAAGGGTTCCTAGGGTCTGT
GAGAAGGGGTTATCTATATGAATTTAAAANTTTTTCAATGGGGACGATAT
TTTGGCCTATTTTGCCAGTGGGAAGGGGTCTGTGAGAAGGGGTTATCAAT
ATGAATTTAAAAATGACATAATGCTGATGCCAACCCTTTTCTTTCTTTTT
GTTTCTTTCAGAGACCGTTCCTGATTATTCGAAGATGTCTTTAACACAAG
CCAAACGATACGAGATGGACAGCCAGGTAGGTTTATTTACAACTGACTCT
CTCGCTTATTCGAACTCGGATTGGGAATCTTATTTGCTCGAGTTTCAGAG
AGATTCAAATTATAGAAAGTATTTCCTCGACGGAGACTGGGAAATTAGTC
TGAATTATAGAAAGACTCGAATATAATTTTGAATAAGCGAGAGTCTACTG
TGTTTACAATTGACTTGAAAAGACGCACCATTGTACCCTTTTGCTGAGTA
GGGCCAACGTCCCTTTCCCTTAGGATTGGGATCACAGGCAAATCTTTTGT
AACTACTCTTAGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCGGGGGGGGGG
GTTGGAAAATTTTCGAAAAATTAACAAGTGGAGGGGCCCGTTTATTTGGC
ACCTAAGAGTAACGGTGGAATACCATTGAGCTGGCATATTTTTCAAAGCA
TCCAGAAAGATTTAGAAATGAGATTGAAGAGAGCTTTAAGAACGGTGAAT
TCCATGCAATTTCAGTGTAGTGTAGAGATTTTGAAAATTAAAAGAGTTTA
GCAAACCTTTCTAACGGGGATGATTGTATCGCACGGCTTTTCTTTTTACA
ATCCAGGTCAAAATTTTGGAGTTGGAAGACAAATTACAGAAAGAGCGGCA
AAATTTGGGACGGTTACGTCAAGCACATTATCAAATCGCTGTCGAGATGT
ATGGTGAAGATGCTGTGAGTAAAAGCGAATAGAACTTTCGTTTTGAAATT
CAGTCGTGATTGTGAATCTGTTCATGTAATCAAATTGATTCATTCATTCA
TTCATTCGTTTATTCGTGCATTCTTTCATTCATTCATTCATTCATTTATT
CGTGCATTTTTTCATTTATCCATTCATTCACTCGTTCATTCATTCAATCC
TTTATTCATTCATTCATTCATTTATTCAATCCTTCATTATTTCATCCATT
CGCACTTTTATTGACTTGTCTGTTCATTCGTTTTTGCTTTTCTTTCATTC
ATCATTTACTGAATCATTATTATGATTACGTCTATGTTATACCCATGATA
GTAGGGGGAAATTTGTAAATTCGCTCGATTTTTTTAGTCAAAGCACTTGT
TATACATTTTTGGAAAGCTAAGGGGTAGGAAAATCAAAATAATTTGGGTG
CCAATTTTTTTTCGGACACTTTGGTGTGATTTTCGGACAAATATGACGGT
CTCGGACAAAAATTATAGGGTAAAAAATTAATGAAAATTTTAGCTTGAGA
AGATAGAGACCTGTAGTATATTTTTAGAAAGCCCTCAAAAAATTAGAATT
AGTGATATATTGTGAGTGCGAGTATAGGTGATTTCAGTACCTAACTCAAG
ATATTGAGCATCCAAAAGCTGGACAAAACAGCTGTTTCTGGCTGAAAAAC
ACTGTTTTTAAGGGTTAATATCTCGAGTTAGGTACAGAAATCACCTATAC
TTGCAATCCAATATATCTCTAATCTTCATTTTTTGAGAGCTTTCCAAAAA
TATACAACAGGTCTCCGTTTTCTCAAGCTAAAATTTTCATTAATTTTTCA
CCCTATAATTTTTGCCTGAGACCGTCATATTTGTCCGAGAATCACACCAA
AGTGTCCGAAAAAAAACTGGCACCCAAGTTATTTTGATTCCCCCACCCTT
TAGCTTTCAAAAAATGTATAACAAGTGCTTTGACTAAAAAAATCGAGCGA
CATAAAAAAAACGAACAAATTTTCCCCTTAGTAAAAACATGCTCGAATTA
ACATTAAAACCATTTTCACCTTTTTCAACTTCTAGGTCACCATGGATTAA
CGCTG

Coding sequence (CDS) from alignment at scaffold_286:392761..403315-

>TCONS_00057250 ID=TCONS_00057250|Name=TCONS_00057250|organism=Clytia hemisphaerica|type=CDS|length=4704bp|location=Sequence derived from alignment at scaffold_286:392761..403315- (Clytia hemisphaerica)
GTCACCATGGATTAAGTCAAAATTTTGGAGTTGGAAGACAAATTACAGAA
AGAGCGGCAAAATTTGGGACGGTTACGTCAAGCACATTATCAAATCGCTG
TCGAGATGTATGGTGAAGATGCTAGACCGTTCCTGATTATTCGAAGATGT
CTTTAACACAAGCCAAACGATACGAGATGGACAGCCAGTTGGTGAGGCAA
CAGCGGGGGTTGTAGCAGCCGTACGGAGTGGTGCATCTATGACCGAGGAA
TCTCGTTGCAGCATCTCGAGTGAAAGCACACAAAACAAGTACACGACTTC
CACCACTCATGACTGCATCCAAAGGAGAGATGCAGCTGATAAGGTGATCG
AACGAAAAGGGAAATTCGAAGAGTTGGTTGTTTCGTCACATGAAATTGCT
GCTTCGACCGCACAACTAGGTTCGGCGTCGGTGAAAGACTTTTACAAACG
GCATCATAAATGGACAGAGGGATTACTGTCAGCAGCTAAATCGGTTGGTT
ACGGAGCTACAATTTTAGTATGAAAGCAATCCGAGAATTAATTTTGAAAT
CCAAAGATCTTCAGGACGAAATTGTGTCTGAAGGAAGAGTCACCATGGAT
TAAGTCAAAATTTTGGAGTTGGAAGACAAATTACAGAAAGAGCGGCAAAA
TTTGGGACGGTTACGTCAAGCACATTATCAAATCGCTGTCGAGATGTATG
GTGAAGATGCTAGACCGTTCCTGATTATTCGAAGATGTCTTTAACACAAG
CCAAACGATACGAGATGGACAGCCAGTTGGTGAGGCAACAGCGGGGGTTG
TAGCAGCCGTACGGAGTGGTGCATCTATGACCGAGGAATCTCGTTGCAGC
ATCTCGAGTGAAAGCACACAAAACAAGTACACGACTTCCACCACTCATGA
CTGCATCCAAAGGAGAGATGCAGCTGATAAGGTGATCGAACGAAAAGGGA
AATTCGAAGAGTTGGTTGTTTCGTCACATGAAATTGCTGCTTCGACCGCA
CAACTAGGTTCGGCGTCGGTGAAAGACTTTTACAAACGGCATCATAAATG
GACAGAGGGATTACTGTCAGCAGCTAAATCGGTTGGTTACGGAGCTACAA
TTTTAGTATGAAAGCAATCCGAGAATTAATTTTGAAATCCAAAGATCTTC
AGGACGAAATTGTGTCTGAAGGAAGAGTCACCATGGATTAAGTCAAAATT
TTGGAGTTGGAAGACAAATTACAGAAAGAGCGGCAAAATTTGGGACGGTT
ACGTCAAGCACATTATCAAATCGCTGTCGAGATGTATGGTGAAGATGCTA
GACCGTTCCTGATTATTCGAAGATGTCTTTAACACAAGCCAAACGATACG
AGATGGACAGCCAGTTGGTGAGGCAACAGCGGGGGTTGTAGCAGCCGTAC
GGAGTGGTGCATCTATGACCGAGGAATCTCGTTGCAGCATCTCGAGTGAA
AGCACACAAAACAAGTACACGACTTCCACCACTCATGACTGCATCCAAAG
GAGAGATGCAGCTGATAAGGTGATCGAACGAAAAGGGAAATTCGAAGAGT
TGGTTGTTTCGTCACATGAAATTGCTGCTTCGACCGCACAACTAGGTTCG
GCGTCGGTGAAAGACTTTTACAAACGGCATCATAAATGGACAGAGGGATT
ACTGTCAGCAGCTAAATCGGTTGGTTACGGAGCTACAATTTTAGTATGAA
AGCAATCCGAGAATTAATTTTGAAATCCAAAGATCTTCAGGACGAAATTG
TGTCTGAAGGAAGAGTCACCATGGATTAAGTCAAAATTTTGGAGTTGGAA
GACAAATTACAGAAAGAGCGGCAAAATTTGGGACGGTTACGTCAAGCACA
TTATCAAATCGCTGTCGAGATGTATGGTGAAGATGCTAGACCGTTCCTGA
TTATTCGAAGATGTCTTTAACACAAGCCAAACGATACGAGATGGACAGCC
AGTTGGTGAGGCAACAGCGGGGGTTGTAGCAGCCGTACGGAGTGGTGCAT
CTATGACCGAGGAATCTCGTTGCAGCATCTCGAGTGAAAGCACACAAAAC
AAGTACACGACTTCCACCACTCATGACTGCATCCAAAGGAGAGATGCAGC
TGATAAGGTGATCGAACGAAAAGGGAAATTCGAAGAGTTGGTTGTTTCGT
CACATGAAATTGCTGCTTCGACCGCACAACTAGGTTCGGCGTCGGTGAAA
GACTTTTACAAACGGCATCATAAATGGACAGAGGGATTACTGTCAGCAGC
TAAATCGGTTGGTTACGGAGCTACAATTTTAGTATGAAAGCAATCCGAGA
ATTAATTTTGAAATCCAAAGATCTTCAGGACGAAATTGTGTCTGAAGGAA
GAGTCACCATGGATTAAGTCAAAATTTTGGAGTTGGAAGACAAATTACAG
AAAGAGCGGCAAAATTTGGGACGGTTACGTCAAGCACATTATCAAATCGC
TGTCGAGATGTATGGTGAAGATGCTAGACCGTTCCTGATTATTCGAAGAT
GTCTTTAACACAAGCCAAACGATACGAGATGGACAGCCAGTTGGTGAGGC
AACAGCGGGGGTTGTAGCAGCCGTACGGAGTGGTGCATCTATGACCGAGG
AATCTCGTTGCAGCATCTCGAGTGAAAGCACACAAAACAAGTACACGACT
TCCACCACTCATGACTGCATCCAAAGGAGAGATGCAGCTGATAAGGTGAT
CGAACGAAAAGGGAAATTCGAAGAGTTGGTTGTTTCGTCACATGAAATTG
CTGCTTCGACCGCACAACTAGGTTCGGCGTCGGTGAAAGACTTTTACAAA
CGGCATCATAAATGGACAGAGGGATTACTGTCAGCAGCTAAATCGGTTGG
TTACGGAGCTACAATTTTAGTATGAAAGCAATCCGAGAATTAATTTTGAA
ATCCAAAGATCTTCAGGACGAAATTGTGTCTGAAGGAAGAGTCACCATGG
ATTAAGTCAAAATTTTGGAGTTGGAAGACAAATTACAGAAAGAGCGGCAA
AATTTGGGACGGTTACGTCAAGCACATTATCAAATCGCTGTCGAGATGTA
TGGTGAAGATGCTAGACCGTTCCTGATTATTCGAAGATGTCTTTAACACA
AGCCAAACGATACGAGATGGACAGCCAGTTGGTGAGGCAACAGCGGGGGT
TGTAGCAGCCGTACGGAGTGGTGCATCTATGACCGAGGAATCTCGTTGCA
GCATCTCGAGTGAAAGCACACAAAACAAGTACACGACTTCCACCACTCAT
GACTGCATCCAAAGGAGAGATGCAGCTGATAAGGTGATCGAACGAAAAGG
GAAATTCGAAGAGTTGGTTGTTTCGTCACATGAAATTGCTGCTTCGACCG
CACAACTAGGTTCGGCGTCGGTGAAAGACTTTTACAAACGGCATCATAAA
TGGACAGAGGGATTACTGTCAGCAGCTAAATCGGTTGGTTACGGAGCTAC
AATTTTAGTATGAAAGCAATCCGAGAATTAATTTTGAAATCCAAAGATCT
TCAGGACGAAATTGTGTCTGAAGGAAGAGTCACCATGGATTAAGTCAAAA
TTTTGGAGTTGGAAGACAAATTACAGAAAGAGCGGCAAAATTTGGGACGG
TTACGTCAAGCACATTATCAAATCGCTGTCGAGATGTATGGTGAAGATGC
TAGACCGTTCCTGATTATTCGAAGATGTCTTTAACACAAGCCAAACGATA
CGAGATGGACAGCCAGTTGGTGAGGCAACAGCGGGGGTTGTAGCAGCCGT
ACGGAGTGGTGCATCTATGACCGAGGAATCTCGTTGCAGCATCTCGAGTG
AAAGCACACAAAACAAGTACACGACTTCCACCACTCATGACTGCATCCAA
AGGAGAGATGCAGCTGATAAGGTGATCGAACGAAAAGGGAAATTCGAAGA
GTTGGTTGTTTCGTCACATGAAATTGCTGCTTCGACCGCACAACTAGGTT
CGGCGTCGGTGAAAGACTTTTACAAACGGCATCATAAATGGACAGAGGGA
TTACTGTCAGCAGCTAAATCGGTTGGTTACGGAGCTACAATTTTAGTATG
AAAGCAATCCGAGAATTAATTTTGAAATCCAAAGATCTTCAGGACGAAAT
TGTGTCTGAAGGAAGAGTCACCATGGATTAAGTCAAAATTTTGGAGTTGG
AAGACAAATTACAGAAAGAGCGGCAAAATTTGGGACGGTTACGTCAAGCA
CATTATCAAATCGCTGTCGAGATGTATGGTGAAGATGCTAGACCGTTCCT
GATTATTCGAAGATGTCTTTAACACAAGCCAAACGATACGAGATGGACAG
CCAGTTGGTGAGGCAACAGCGGGGGTTGTAGCAGCCGTACGGAGTGGTGC
ATCTATGACCGAGGAATCTCGTTGCAGCATCTCGAGTGAAAGCACACAAA
ACAAGTACACGACTTCCACCACTCATGACTGCATCCAAAGGAGAGATGCA
GCTGATAAGGTGATCGAACGAAAAGGGAAATTCGAAGAGTTGGTTGTTTC
GTCACATGAAATTGCTGCTTCGACCGCACAACTAGGTTCGGCGTCGGTGA
AAGACTTTTACAAACGGCATCATAAATGGACAGAGGGATTACTGTCAGCA
GCTAAATCGGTTGGTTACGGAGCTACAATTTTAGTATGAAAGCAATCCGA
GAATTAATTTTGAAATCCAAAGATCTTCAGGACGAAATTGTGTCTGAAGG
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036064XLOC_036064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057250-exon-scaffold_286-1575043694:403088..403315TCONS_00057250-exon-scaffold_286-1575043694:403088..403315Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:402658..402758TCONS_00057250-exon-scaffold_286-1575043694:402658..402758Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:402129..402219TCONS_00057250-exon-scaffold_286-1575043694:402129..402219Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:401682..401754TCONS_00057250-exon-scaffold_286-1575043694:401682..401754Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:399582..399647TCONS_00057250-exon-scaffold_286-1575043694:399582..399647Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:394990..395054TCONS_00057250-exon-scaffold_286-1575043694:394990..395054Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:393852..393959TCONS_00057250-exon-scaffold_286-1575043694:393852..393959Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1575043694:392761..392780TCONS_00057250-exon-scaffold_286-1575043694:392761..392780Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:403088..403315TCONS_00057250-exon-scaffold_286-1510915933:403088..403315Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:402658..402758TCONS_00057250-exon-scaffold_286-1510915933:402658..402758Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:402129..402219TCONS_00057250-exon-scaffold_286-1510915933:402129..402219Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:401682..401754TCONS_00057250-exon-scaffold_286-1510915933:401682..401754Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:399582..399647TCONS_00057250-exon-scaffold_286-1510915933:399582..399647Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:394990..395054TCONS_00057250-exon-scaffold_286-1510915933:394990..395054Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:393852..393959TCONS_00057250-exon-scaffold_286-1510915933:393852..393959Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1510915933:392761..392780TCONS_00057250-exon-scaffold_286-1510915933:392761..392780Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:403088..403315TCONS_00057250-exon-scaffold_286-1491911889:403088..403315Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:402658..402758TCONS_00057250-exon-scaffold_286-1491911889:402658..402758Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:402129..402219TCONS_00057250-exon-scaffold_286-1491911889:402129..402219Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:401682..401754TCONS_00057250-exon-scaffold_286-1491911889:401682..401754Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:399582..399647TCONS_00057250-exon-scaffold_286-1491911889:399582..399647Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:394990..395054TCONS_00057250-exon-scaffold_286-1491911889:394990..395054Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:393852..393959TCONS_00057250-exon-scaffold_286-1491911889:393852..393959Clytia hemisphaericaexon
TCONS_00057250-exon-scaffold_286-1491911889:392761..392780TCONS_00057250-exon-scaffold_286-1491911889:392761..392780Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057250-proteinTCONS_00057250-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:392761..403315 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.89766	1.62489	4.95331	11.3471	20.5069	21.2161	11.4833	15.3118	9.01154	10.792	6.2051	6.73245	8.37334	7.05736	9.77944	9.12374	8.66733	8.16018	10.4241	10.2839	4.54993	1.55535	6.14026	3.30519	8.13513	5.85215	3.48303	3.81485	4.7073	0.674992
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002558ILWEQ_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003779 actin binding
Blast
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BLAST of TCONS_00057250 vs. Swiss-Prot (Human)
Match: HIP1 (Huntingtin-interacting protein 1 OS=Homo sapiens GN=HIP1 PE=1 SV=5)

HSP 1 Score: 217.624 bits (553), Expect = 3.157e-64
Identity = 122/192 (63.54%), Postives = 156/192 (81.25%), Query Frame = 1 
Query:  133 RILDSCTALMKAIRELILKSKDLQDEIVSEGRGSASVKDFYKRHHKWTEGLLSAAKSVGYGATILVDAADKVIERKGKFEELVVSSHEIAASTAQLVAASRVKAHKTSTRLPPLMTASKXXXXXXXXXXXXXXXXXXMTEESQTVPDYSKMSLTQAKRYEMDSQVKILELEDKLQKERQNLGRLRQAHYQIA 708
            RIL  CT+LM+AI+ LI+ SKDLQ EIV  GRG+AS K+FY ++ +WTEGL+SA+K+VG+GAT++VDAAD V++ +GKFEEL+V SHEIAASTAQLVAAS+VKA K S  L  L  AS+GV +ATAGVVA+  SG S  EE+  + D+S M+LTQ KR EMDSQV++LELE++LQKERQ LG LR+ HY++A
Sbjct:  822 RILGCCTSLMQAIQVLIVASKDLQREIVESGRGTASPKEFYAKNSRWTEGLISASKAVGWGATVMVDAADLVVQGRGKFEELMVCSHEIAASTAQLVAASKVKADKDSPNLAQLQQASRGVNQATAGVVASTISGKSQIEETDNM-DFSSMTLTQIKRQEMDSQVRVLELENELQKERQKLGELRKKHYELA 1012
The following BLAST results are available for this feature:
BLAST of TCONS_00057250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HIP13.157e-6463.54Huntingtin-interacting protein 1 OS=Homo sapiens G... [more]
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