TCONS_00057255 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057255
Unique NameTCONS_00057255
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057255 ID=TCONS_00057255|Name=TCONS_00057255|organism=Clytia hemisphaerica|type=transcript|length=1618bp
atgaaaacacataattaatctGCTGAACAATCAATCTGTTTGTTCAAAGG
GAATTTCCACACGATATGATATTTTCCCCTATAGATTAAAAAAAGAGTAT
AAAAGATGGTTATTGCTGTCAGTTTTTATTTTAACTGACTTGCAAATAGC
TAAGGAACGAAAAAAACCTGTACATATTATTTTTAAGTGTACAGAATATA
GAAAAATATTAATATTATTAAACTGTTTCAATATGGGTAGTATGTTTGAA
AACAATGCTTTTGTTGAATACTCAAATATaacacaaaagaaaaatttagc
aACAAAAGTGACGAGTGGTGGAGATAAAATTTCGAAATGGAAAGAGTCAG
GGTTTGCACCTCTTTTATCAAAAGCTCAATACATCTGCAGCTTGTGTACC
ATGTATATGCTTCAATCTATCGTACAAACCTTCCGTGGATCACTGGCTTG
TGAAGATTGCTACAGACAAGGACTAAAAACAAACCCAGGCTTCTGTCCCA
TCGATAAGCAACCAATCAAAGAAGGAGAGTTCTTCGTGGACAAAGCCAAG
GAGAAAGAGATTGGTAACACAGAAATACAATGCCCACATCACCAAGAAGG
TTGTACTTGGAAAGGATGTATCAGAGATTTCCTGAGGGAACATCAAGATC
GATGTGAATATGAACCTACCGAATGCCAATTATGTCATGAAGGTGTTCTT
CCATGTCATAAAGACGGTCACATGTCATCGTGCCAAGGAATATTCGCGGC
TGGACCGTGTATCTATTGGGATGCTGGGTGCCACTTTACGGCTGAGAATA
ATATGGAAATGAAGACTCACTTAACCGAATCACTCCTAAGCCACACAACT
CTGCATAAACTTTGGAACAACAAAATCATAGAACAGTTCCCGAATCTAAC
AAAGAAGTTTGAAGAAGAATCCAACAAGATTGAGGAAATTTCATCCAAAG
CTATCAAACCTATCAAAAAGAGGCAAACAGAATTAGAACAAAAATTCCAA
GATTTATCAAATacatttcaagattttgagcaACAAAAGATGATTGCTGA
TTCTCATCGCGATGACTTTTCAGTGGATGCTATTATCCAACCAATCACAA
TGCGAATGGATGATTTAGATTTGAGATTCCAACTTCATGAGAATACAACA
TTTGATGGACATCTTTTATGGAAAATCAATCGAGTCCATGAACGCACATT
AGAAGCCAAATCAAAGAAGGTGACAGCATTGCATTCATCACCATGTTTCA
CCAGTCGCTATGGTTACAAATATTGTTTACGCCTTTATCTCCAAGGAGAC
GGGATGGGTAAAGATAAATACTTGTCTCTTTTTATCGTTATTATGAAGTC
AGAGTATGATAACGTCTTGAAGTGgccttttcaaaagaaaatcactTTCA
CCTTAATCAACCAAGATCAAAACCGTAAGAATCTGGTTGAAAGCATGTTA
CCGAGTGCTGATTCATCAAGCTTTCAAAAACCGAAAAAAGACATGAATAT
TGCTTCGGGGTGTCCGCGATTTGTGGAGATTAACCGATTAGCACCGGACG
GATTCTTGAAAGATGATTCTCTATTTATTGATGTTGAAATCAAATGACGT
CTGCAGCATATGAAACNN
Run BLAST on NCBI

protein sequence of TCONS_00057255-protein

>TCONS_00057255-protein ID=TCONS_00057255-protein|Name=TCONS_00057255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MGSMFENNAFVEYSNITQKKNLATKVTSGGDKISKWKESGFAPLLSKAQY
ICSLCTMYMLQSIVQTFRGSLACEDCYRQGLKTNPGFCPIDKQPIKEGEF
FVDKAKEKEIGNTEIQCPHHQEGCTWKGCIRDFLREHQDRCEYEPTECQL
CHEGVLPCHKDGHMSSCQGIFAAGPCIYWDAGCHFTAENNMEMKTHLTES
LLSHTTLHKLWNNKIIEQFPNLTKKFEEESNKIEEISSKAIKPIKKRQTE
LEQKFQDLSNTFQDFEQQKMIADSHRDDFSVDAIIQPITMRMDDLDLRFQ
LHENTTFDGHLLWKINRVHERTLEAKSKKVTALHSSPCFTSRYGYKYCLR
LYLQGDGMGKDKYLSLFIVIMKSEYDNVLKWPFQKKITFTLINQDQNRKN
LVESMLPSADSSSFQKPKKDMNIASGCPRFVEINRLAPDGFLKDDSLFID
VEIK
Run BLAST on NCBI

transcript from alignment at scaffold_286:502226..507435-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057255 ID=TCONS_00057255|Name=TCONS_00057255|organism=Clytia hemisphaerica|type=transcript|length=5210bp|location=Sequence derived from alignment at scaffold_286:502226..507435- (Clytia hemisphaerica)
ATGAAAACACATAATTAATCTGCTGAACAATCAATCTGTTTGTTCAAAGG
GAATTTCCACACGATATGATATTTTCCCCTATAGATTAAAAAAAGAGTAT
AAAAGATGGTTATTGCTGTCAGTTTTTATTTTAACTGACTTGCAAATAGC
TAAGGAACGAAAAAAACCTGTACATATTATTTTTAAGTGTACAGAATATA
GAAAAATATTAATATTATTAAACTGTTTCAATATGGGTAGTATGTTTGAA
AACAATGCTTTTGTTGAATACTCAAATATAACACAAAAGAAAAATTTAGC
AACAAAAGTGACGAGTGGTGGAGATAAAATTTCGAAATGGAAAGAGTCAG
GGTTTGCACCTCTTTTATCAAAAGCTCAATACATCTGCAGCTTGTGTACC
ATGTATATGCTTCAATCTATCGTACAAACCTTCCGTGGATCACTGGCTTG
TGAAGATTGCTACAGACAAGGACTAAAGTAAGAAAAATGATACTTTATTT
TTTATGCTTTTATCATAGATGGTAAAAATGGCTTCAGTTTGAAATAGAGT
AAGATAGTCTTATAGGTTTTATTTTTACATAAGTATTCCCGTTTCACATC
AGACACATATTTCATATCAGGACAGTGTCTTCCTATTGTTACATTATGCT
GATATAAACAAAAAAATGATAAAGAAAATATTAATAAAAACATTTTTTTG
CTTATATCAGCACAATATAACAATAGGCAGACCTTGTCCTGATATGAAAT
ATGTGTCTGATATGAAACAGGAAAACTTGTAAAAATATTGCCTTTAATTT
TTGTCAAACACATATATAAAAATGCTTAGCTCTTCGAAATTCTAATAATA
AAAACACACGCCTCTGTTCTGTTGTAATTCATCATACAAAGAAAGTATAG
TATCATGATGATTCAGTATTTTACCGGTACTTTCCCAATGATGTTCAAAG
GGAATTTTCAAAACTACACAACATTCATTTTGCTGACTTCTAGAAACGAC
AAAACTTCCCAGAAGAATTACCCACTTTATCTCTCTTCATTGATAATTTA
TGCTTACGTAGTGTGTTTTGATTAATCAACAATCTATAATTTATGCAATA
TTTGCTGATCCATTATTTATTTGAATAATTCAATATGGCAGCTTTGTAAA
CCGCAGGAATCTTTTTATAAGCATTTAAAGTGTAATTTGATTCCAGTTCT
TTCTAGAAAGTTTTATTTTTTCATAAGTGTTCCCGTTTCATATCCGGACA
GTGGGTGCCTATTGTTATGTTATGCTGATATAAGCAAAAATGTTTTTCTT
TTCCTCTTTCTGACCAATCTTGCTCCACATCCGTGTCAATCCAATATGAA
AAAGCTTGTAAATTAAATTTGATGAGTAAGCAAACGATGGCACTCATATT
TAAAAACAAAACCGTTTAAGTAAAAACTCGGTAAAAACGGTTAATGATCT
AACAATTTACGGAAATTTTATTAATTTTTCTAGAACAAACCCAGGCTTCT
GTCCCATCGATAAGCAACCAATCAAAGAAGGAGAGTTCTTCGTGGACAAA
GCCAAGGAGAAAGAGATTGGTAACACAGAAATACAATGCCCACATCACCA
AGAAGGTTGTACTTGGAAAGGATGTATCAGAGATTTCCTGAGGGTAAGCA
ATCTGTTCACTACATTACATTTTACTGCGAAAAAAGATTCTTAAGAAGAA
AAGTCTACGAGTGGCTAATCGCCCGTGTAGGAAGCACAACTGACGTCATC
AAGCTCAATTGAGCTACCCTTGCATGTGTTTTTGTCCGTTTTAACATTTT
TAACATCAGACGGATCAACGGATCAACGGATCGATGGATCAACGGATTGG
TGGATCGACGAATCAATGGATCCATGGATCAACAGATCGACGGATCAACG
GATCGACGGATCGACGGATCGTCGGATCAACAGATCAATGGATCGACGGA
TCGATGGATCGACGGATCGACGGATCGATGGATCGACGGAACAATTGATA
GACGGAACAATTGATCGACGGATCAATGGATCGATGGATCGACGGATCAA
CGGATCAATGGATCGACGGATCGATGGATCGATGGATCAATTGATGGACG
GATCAACGGATCAACGGATCAACGGATCAATGGATCGACGGATCAACGGA
TCAATGGATCGATGGATTGATGGATCAATGGATCGACGGATCAATGGATC
GACAGATCAGAATCAAAGATTGATGGTTCTGGAAGTTCTGCATCAGGAGT
TGGTGATTCTAATGAATGTGATGATGGAGTTGATGGTTCTGGGGAATGTG
ATCGTGGTATTGATGGTTCTGGTGAATGTAATGGTGGAATTGATGGTTCT
GGTGAATGTGATGGTGGAGTTGGTGGTTCTGGGGAAATGTGATCGTGGAA
TTGATGGTTATGGTGAATGTGATCGTGGAATTGATGGTTCTGGTGGAGTT
GATGGTTCTGGTGAATGTAATGGTGGAATTGATGGTTCTGGTGAATGTGA
TGGTGGAGTTGGTGGTTCTGGGGAAATGTGATCGTGGAATTGATGGTTAT
GGTCATTTATTCCACCATTGCATTCACCAGAACCATCAATCCCACAATTA
CATTCACCAGAACCATCAACTCCACCAGAACCATCAATTCCACGATCACA
TTCACCAGAACCATCAATTCCACCATCACATTCACCAGAACCATCAATTT
CACCATCACATTCACCAGAACCATCAACTCCACCATCACATTCACCAGAA
CCATCAACTCCACTATCACATTAACCAGATACATCAACTGCACACCATCA
CATTCACCAGAACCATCAACTCCACTATCACATTAACCAGATACATCAAC
TCCACACCATCACATTAACCAGAACCATCAACTTCACCATTGCATTACCC
AGAACCATCAATTCCACCATCACATTCACCAGAACCATAAACTCCACCAT
CACATTCACCAGGACCATCAATTCCATGATCACATTAACCAGATCCACAA
ACTCCACTATCACATTCACCAGGACCGTAAACTCCACCATAAAATTCACC
AGGACCATCAATTCCACGATCGCATTCACCAGATCCATCAACACCATTAT
CACATTCACCAGGACCATCAGTTCCACGATCATTATTCGATAAGAACCAT
CAATTCCACCATCACATTCACCAGGACCGGCAACTCCACCATCACATTCA
CCAGGACCATCAACTCTACTATCACATTCACCAGAACCATCAACTCCACC
ATCACATTCACCAGAATCACAACTCTTGATGCAGAACCTCCAGAACCATC
AATCTTTGATTCTGATCCGTCGATCCATTGATGATCCATCAATCCGTCGA
TCCATTGATGATCCATCAATCCGTCGATCCATTGATCCATGATCCGTCGA
TCCATTGATCCATCCATCCGTTGAACCACTGATCCGTCGATCTATTGATC
CGTCGATCCTTCGATTCATTGATCCGTTTATCCGTCGATCCGTTGATCAA
TCGATCCGTTGATCCATTGATCCGTCGATCCATTGATCCATCGATCCGTC
GATTCGTTGATCCGCTGATAATCCGTTGATAATCCGTTGATCCATTGATC
CGTTGATCCGTCTGATGTTTAAAATGTTAAAACAGACAAAAACACATGCA
AGGGTAGCCCAATGGAGCTTGATGACGTCAGTTGTGCTTCTTACACGGGC
GATTAGCCCTACGAGGGCTACGAGGCTGCAAATCAAACCAGTCCCAGCTG
ACACACAACGTTGTTTCAACGTTTATCTAATAATTTATAACGTTGTCACA
TATAATGTTATTTTAACATCATCATTTCTTATTATGTTTTTAGGAACATC
AAGATCGATGTGAATATGAACCTACCGAATGCCAATTATGTCATGAAGGT
GTTCTTCCATGTCATAAAGACGGTCACATGTCATCGTGCCAAGGAATATT
CGCGGCTGGACCGTGTATCTATTGGGATGCTGGGTGCCACTTTACGGTAA
GTTACTGAACCCGGTTTATACATGTTAGGAGGTACCCTCTGAGCTCTGAG
GAAAAATATTTTTCGTTGCTTTTAAGGTTTTGTTCGAAGGTTTTCCCTGA
TGAAAGATTTAACCCTACCAATTTTCCCACTCTAAGGTCACCATAAAATA
TATTTTCTTGCAATTCATATACACACAAAATTAATTTAAGACACTATAAT
TTAAGAACTTTTTCATTGATAATGGACAGAGCTCAAAAGTGCAAAAGCCG
CTGGTGGATTTAAGACAATAGAGCAAGTACGTTGGAAAAATGCGAAGGAG
TGCAACACTCGACGTGGTCTAAAACCGCCTATGAAAGCGTTATCTGAATC
TAAACTTTCTTTTCCTTAATTCCTAAATTTAGGCTGAGAATAATATGGAA
ATGAAGACTCACTTAACCGAATCACTCCTAAGCCACACAACTCTGCATAA
ACTTTGGAACAACAAAATCATAGAACAGTTCCCGAATCTAACAAAGAAGT
TTGAAGAAGAATCCAACAAGATTGAGGAAATTTCATCCAAAGCTATCAAA
CCTATCAAAAAGAGGCAAACAGAATTAGAACAAAAATTCCAAGATTTATC
AAATACATTTCAAGATTTTGAGCAACAAAAGATGATTGCTGATTCTCATC
GCGATGACTTTTCAGTGGATGCTATTATCCAACCAATCACAATGCGAATG
GATGATTTAGATTTGAGATTCCAACTTCATGAGAATACAACATTTGATGG
ACATCTTTTATGGAAAATCAATCGAGTCCATGAACGCACATTAGAAGCCA
AATCAAAGAAGGTGACAGCATTGCATTCATCACCATGTTTCACCAGTCGC
TATGGTTACAAATATTGTTTACGCCTTTATCTCCAAGGAGACGGGATGGG
TAAAGATAAATACTTGTCTCTTTTTATCGTTATTATGAAGTCAGAGTATG
ATAACGTCTTGAAGTGGCCTTTTCAAAAGAAAATCACTTTCACCTTAATC
AACCAAGATCAAAACCGTAAGAATCTGGTTGAAAGCATGTTACCGAGTGC
TGATTCATCAAGCTTTCAAAAACCGAAAAAAGACATGAATATTGCTTCGG
GGTGTCCGCGATTTGTGGAGATTAACCGATTAGCACCGGACGGATTCTTG
AAAGATGATTCTCTATTTATTGATGTTGAAATCAAATGACGTCTGCAGCA
TATGAAACNN

Coding sequence (CDS) from alignment at scaffold_286:502226..507435-

>TCONS_00057255 ID=TCONS_00057255|Name=TCONS_00057255|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_286:502226..507435- (Clytia hemisphaerica)
GCTGAGAATAATATGGAAATGAAGACTCACTTAACCGAATCACTCCTAAG
CCACACAACTCTGCATAAACTTTGGAACAACAAAATCATAGAACAGTTCC
CGAATCTAACAAAGAAGTTTGAAGAAGAATCCAACAAGATTGAGGAAATT
TCATCCAAAGCTATCAAACCTATCAAAAAGAGGCAAACAGAATTAGAACA
AAAATTCCAAGATTTATCAAATACATTTCAAGATTTTGAGCAACAAAAGA
TGATTGCTGATTCTCATCGCGATGACTTTTCAGTGGATGCTATTATCCAA
CCAATCACAATGCGAATGGATGATTTAGATTTGAGATTCCAACTTCATGA
GAATACAACATTTGATGGACATCTTTTATGGAAAATCAATCGAGTCCATG
AACGCACATTAGAAGCCAAATCAAAGAAGGTGACAGCATTGCATTCATCA
CCATGTTTCACCAGTCGCTATGGTTACAAATATTGTTTACGCCTTTATCT
CCAAGGAGACGGGATGGGTAAAGATAAATACTTGTCTCTTTTTATCGTTA
TTATGAAGTCAGAGTATGATAACGTCTTGAAGTGGCCTTTTCAAAAGAAA
ATCACTTTCACCTTAATCAACCAAGATCAAAACCGTAAGAATCTGGTTGA
AAGCATGTTACCGAGTGCTGATTCATCAAGCTTTCAAAAACCGAAAAAAG
ACATGAATATTGCTTCGGGGTGTCCGCGATTTGTGGAGATTAACCGATTA
GCACCGGACGGATTCTTGAAAGATGATTCTCTATTTATTGATGTTGAAAT
CAAATGAGAACATCAAGATCGATGTGAATATGAACCTACCGAATGCCAAT
TATGTCATGAAGGTGTTCTTCCATGTCATAAAGACGGTCACATGTCATCG
TGCCAAGGAATATTCGCGGCTGGACCGTGTATCTATTGGGATGCTGGGTG
CCACTTTACGAACAAACCCAGGCTTCTGTCCCATCGATAAGCAACCAATC
AAAGAAGGAGAGTTCTTCGTGGACAAAGCCAAGGAGAAAGAGATTGGTAA
CACAGAAATACAATGCCCACATCACCAAGAAGGTTGTACTTGGAAAGGAT
GTATCAGAGATTTCCTGAGGATGGGTAGTATGTTTGAAAACAATGCTTTT
GTTGAATACTCAAATATAACACAAAAGAAAAATTTAGCAACAAAAGTGAC
GAGTGGTGGAGATAAAATTTCGAAATGGAAAGAGTCAGGGTTTGCACCTC
TTTTATCAAAAGCTCAATACATCTGCAGCTTGTGTACCATGTATATGCTT
CAATCTATCGTACAAACCTTCCGTGGATCACTGGCTTGTGAAGATTGCTA
CAGACAAGGACTAAAGCTGAGAATAATATGGAAATGAAGACTCACTTAAC
CGAATCACTCCTAAGCCACACAACTCTGCATAAACTTTGGAACAACAAAA
TCATAGAACAGTTCCCGAATCTAACAAAGAAGTTTGAAGAAGAATCCAAC
AAGATTGAGGAAATTTCATCCAAAGCTATCAAACCTATCAAAAAGAGGCA
AACAGAATTAGAACAAAAATTCCAAGATTTATCAAATACATTTCAAGATT
TTGAGCAACAAAAGATGATTGCTGATTCTCATCGCGATGACTTTTCAGTG
GATGCTATTATCCAACCAATCACAATGCGAATGGATGATTTAGATTTGAG
ATTCCAACTTCATGAGAATACAACATTTGATGGACATCTTTTATGGAAAA
TCAATCGAGTCCATGAACGCACATTAGAAGCCAAATCAAAGAAGGTGACA
GCATTGCATTCATCACCATGTTTCACCAGTCGCTATGGTTACAAATATTG
TTTACGCCTTTATCTCCAAGGAGACGGGATGGGTAAAGATAAATACTTGT
CTCTTTTTATCGTTATTATGAAGTCAGAGTATGATAACGTCTTGAAGTGG
CCTTTTCAAAAGAAAATCACTTTCACCTTAATCAACCAAGATCAAAACCG
TAAGAATCTGGTTGAAAGCATGTTACCGAGTGCTGATTCATCAAGCTTTC
AAAAACCGAAAAAAGACATGAATATTGCTTCGGGGTGTCCGCGATTTGTG
GAGATTAACCGATTAGCACCGGACGGATTCTTGAAAGATGATTCTCTATT
TATTGATGTTGAAATCAAATGAGAACATCAAGATCGATGTGAATATGAAC
CTACCGAATGCCAATTATGTCATGAAGGTGTTCTTCCATGTCATAAAGAC
GGTCACATGTCATCGTGCCAAGGAATATTCGCGGCTGGACCGTGTATCTA
TTGGGATGCTGGGTGCCACTTTACGAACAAACCCAGGCTTCTGTCCCATC
GATAAGCAACCAATCAAAGAAGGAGAGTTCTTCGTGGACAAAGCCAAGGA
GAAAGAGATTGGTAACACAGAAATACAATGCCCACATCACCAAGAAGGTT
GTACTTGGAAAGGATGTATCAGAGATTTCCTGAGGATGGGTAGTATGTTT
GAAAACAATGCTTTTGTTGAATACTCAAATATAACACAAAAGAAAAATTT
AGCAACAAAAGTGACGAGTGGTGGAGATAAAATTTCGAAATGGAAAGAGT
CAGGGTTTGCACCTCTTTTATCAAAAGCTCAATACATCTGCAGCTTGTGT
ACCATGTATATGCTTCAATCTATCGTACAAACCTTCCGTGGATCACTGGC
TTGTGAAGATTGCTACAGACAAGGACTAAAGCTGAGAATAATATGGAAAT
GAAGACTCACTTAACCGAATCACTCCTAAGCCACACAACTCTGCATAAAC
TTTGGAACAACAAAATCATAGAACAGTTCCCGAATCTAACAAAGAAGTTT
GAAGAAGAATCCAACAAGATTGAGGAAATTTCATCCAAAGCTATCAAACC
TATCAAAAAGAGGCAAACAGAATTAGAACAAAAATTCCAAGATTTATCAA
ATACATTTCAAGATTTTGAGCAACAAAAGATGATTGCTGATTCTCATCGC
GATGACTTTTCAGTGGATGCTATTATCCAACCAATCACAATGCGAATGGA
TGATTTAGATTTGAGATTCCAACTTCATGAGAATACAACATTTGATGGAC
ATCTTTTATGGAAAATCAATCGAGTCCATGAACGCACATTAGAAGCCAAA
TCAAAGAAGGTGACAGCATTGCATTCATCACCATGTTTCACCAGTCGCTA
TGGTTACAAATATTGTTTACGCCTTTATCTCCAAGGAGACGGGATGGGTA
AAGATAAATACTTGTCTCTTTTTATCGTTATTATGAAGTCAGAGTATGAT
AACGTCTTGAAGTGGCCTTTTCAAAAGAAAATCACTTTCACCTTAATCAA
CCAAGATCAAAACCGTAAGAATCTGGTTGAAAGCATGTTACCGAGTGCTG
ATTCATCAAGCTTTCAAAAACCGAAAAAAGACATGAATATTGCTTCGGGG
TGTCCGCGATTTGTGGAGATTAACCGATTAGCACCGGACGGATTCTTGAA
AGATGATTCTCTATTTATTGATGTTGAAATCAAATGAGAACATCAAGATC
GATGTGAATATGAACCTACCGAATGCCAATTATGTCATGAAGGTGTTCTT
CCATGTCATAAAGACGGTCACATGTCATCGTGCCAAGGAATATTCGCGGC
TGGACCGTGTATCTATTGGGATGCTGGGTGCCACTTTACGAACAAACCCA
GGCTTCTGTCCCATCGATAAGCAACCAATCAAAGAAGGAGAGTTCTTCGT
GGACAAAGCCAAGGAGAAAGAGATTGGTAACACAGAAATACAATGCCCAC
ATCACCAAGAAGGTTGTACTTGGAAAGGATGTATCAGAGATTTCCTGAGG
ATGGGTAGTATGTTTGAAAACAATGCTTTTGTTGAATACTCAAATATAAC
ACAAAAGAAAAATTTAGCAACAAAAGTGACGAGTGGTGGAGATAAAATTT
CGAAATGGAAAGAGTCAGGGTTTGCACCTCTTTTATCAAAAGCTCAATAC
ATCTGCAGCTTGTGTACCATGTATATGCTTCAATCTATCGTACAAACCTT
CCGTGGATCACTGGCTTGTGAAGATTGCTACAGACAAGGACTAAAGCTGA
GAATAATATGGAAATGAAGACTCACTTAACCGAATCACTCCTAAGCCACA
CAACTCTGCATAAACTTTGGAACAACAAAATCATAGAACAGTTCCCGAAT
CTAACAAAGAAGTTTGAAGAAGAATCCAACAAGATTGAGGAAATTTCATC
CAAAGCTATCAAACCTATCAAAAAGAGGCAAACAGAATTAGAACAAAAAT
TCCAAGATTTATCAAATACATTTCAAGATTTTGAGCAACAAAAGATGATT
GCTGATTCTCATCGCGATGACTTTTCAGTGGATGCTATTATCCAACCAAT
CACAATGCGAATGGATGATTTAGATTTGAGATTCCAACTTCATGAGAATA
CAACATTTGATGGACATCTTTTATGGAAAATCAATCGAGTCCATGAACGC
ACATTAGAAGCCAAATCAAAGAAGGTGACAGCATTGCATTCATCACCATG
TTTCACCAGTCGCTATGGTTACAAATATTGTTTACGCCTTTATCTCCAAG
GAGACGGGATGGGTAAAGATAAATACTTGTCTCTTTTTATCGTTATTATG
AAGTCAGAGTATGATAACGTCTTGAAGTGGCCTTTTCAAAAGAAAATCAC
TTTCACCTTAATCAACCAAGATCAAAACCGTAAGAATCTGGTTGAAAGCA
TGTTACCGAGTGCTGATTCATCAAGCTTTCAAAAACCGAAAAAAGACATG
AATATTGCTTCGGGGTGTCCGCGATTTGTGGAGATTAACCGATTAGCACC
GGACGGATTCTTGAAAGATGATTCTCTATTTATTGATGTTGAAATCAAAT
GAGAACATCAAGATCGATGTGAATATGAACCTACCGAATGCCAATTATGT
CATGAAGGTGTTCTTCCATGTCATAAAGACGGTCACATGTCATCGTGCCA
AGGAATATTCGCGGCTGGACCGTGTATCTATTGGGATGCTGGGTGCCACT
TTACGAACAAACCCAGGCTTCTGTCCCATCGATAAGCAACCAATCAAAGA
AGGAGAGTTCTTCGTGGACAAAGCCAAGGAGAAAGAGATTGGTAACACAG
AAATACAATGCCCACATCACCAAGAAGGTTGTACTTGGAAAGGATGTATC
AGAGATTTCCTGAGGATGGGTAGTATGTTTGAAAACAATGCTTTTGTTGA
ATACTCAAATATAACACAAAAGAAAAATTTAGCAACAAAAGTGACGAGTG
GTGGAGATAAAATTTCGAAATGGAAAGAGTCAGGGTTTGCACCTCTTTTA
TCAAAAGCTCAATACATCTGCAGCTTGTGTACCATGTATATGCTTCAATC
TATCGTACAAACCTTCCGTGGATCACTGGCTTGTGAAGATTGCTACAGAC
AAGGACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036068XLOC_036068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057255-exon-scaffold_286-1575043694:506959..507435TCONS_00057255-exon-scaffold_286-1575043694:506959..507435Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1575043694:505793..505952TCONS_00057255-exon-scaffold_286-1575043694:505793..505952Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1575043694:503440..503592TCONS_00057255-exon-scaffold_286-1575043694:503440..503592Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1575043694:502226..503053TCONS_00057255-exon-scaffold_286-1575043694:502226..503053Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1510915933:506959..507435TCONS_00057255-exon-scaffold_286-1510915933:506959..507435Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1510915933:505793..505952TCONS_00057255-exon-scaffold_286-1510915933:505793..505952Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1510915933:503440..503592TCONS_00057255-exon-scaffold_286-1510915933:503440..503592Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1510915933:502226..503053TCONS_00057255-exon-scaffold_286-1510915933:502226..503053Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1491911889:506959..507435TCONS_00057255-exon-scaffold_286-1491911889:506959..507435Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1491911889:505793..505952TCONS_00057255-exon-scaffold_286-1491911889:505793..505952Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1491911889:503440..503592TCONS_00057255-exon-scaffold_286-1491911889:503440..503592Clytia hemisphaericaexon
TCONS_00057255-exon-scaffold_286-1491911889:502226..503053TCONS_00057255-exon-scaffold_286-1491911889:502226..503053Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057255-proteinTCONS_00057255-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:502226..507435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0503588	0.0736616	0.0570188	0.027892	10.2547	6.19827	19.488	27.9424	10.1635	45.7835	21.4285	8.30082	48.396	39.773	40.3195	76.0276	16.1235	17.7078	55.9682	100.412	14.2174	19.2724	23.6447	27.0871	37.3069	33.9228	297.268	214.818	71.2932	38.0409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR013083Znf_RING/FYVE/PHD
IPR012227TNF_rcpt--assoc_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00057255 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.061e-46
Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = 2 
Query: 1076 DAIIQPITMRMDDLDLRFQLHENTTFDGHLLWKINRVHERTLEAKSKKVTALHSSPCFTSRYGYKYCLRLYLQGDGMGKDKYLSLFIVIMKSEYDNVLKWPFQKKITFTLINQDQNRKNLVESMLPSADSSSFQKPKKDMNIASGCPRFVEINRLAPDGFLKDDSLFIDVEI 1591
            D ++    +R+ D+DLRFQ+ E  +++G L+WKI     R  EA   K  +L+S P +T  +GYK C R+YL GDGMGK  +LSLF VIM+ EYD +L WPF++K+T  L++Q  +R++L ++  P  +SSSF+KP  +MNIASGCP FV    L    ++KDD++FI V +
Sbjct:  389 DQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 560
The following BLAST results are available for this feature:
BLAST of TCONS_00057255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF34.061e-4645.93TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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