TCONS_00057640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057640
Unique NameTCONS_00057640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057640 ID=TCONS_00057640|Name=TCONS_00057640|organism=Clytia hemisphaerica|type=transcript|length=368bp
TTTAATGTTTATACGAATTTCATTATGATATCTTCTTTTGTGAAAAGTCA
ATTAGTTTCCTTTGGGAATGGGGATGGTTATGTAATGTTCGATGCAATGT
TTGTTTCTTTCTTGATTGGGGTACTTTTAACCTGACTAACTAAAGATATG
TTATTTTATTTCCGGACAAGCTGTATGTTTTAAGTCGTATGTCATTATTT
TTAAATCGTCATATTTTAAGATATTTATGAAACATTTATTGTTAGTTCTG
TTTTCATTTAGAAATATTATCAAAAATTAAGATCCTGACATGGCCTTTGA
AGACTTTATTTTCTCCAATGGACAACCCACTGTGGTTTTGAGAATCTAAA
AATTGACAAATTCAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_295:13357..13724

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057640 ID=TCONS_00057640|Name=TCONS_00057640|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at scaffold_295:13357..13724 (Clytia hemisphaerica)
TTTTTGAATTTGTCAATTTTTAGATTCTCAAAACCACAGTGGGTTGTCCA
TTGGAGAAAATAAAGTCTTCAAAGGCCATGTCAGGATCTTAATTTTTGAT
AATATTTCTAAATGAAAACAGAACTAACAATAAATGTTTCATAAATATCT
TAAAATATGACGATTTAAAAATAATGACATACGACTTAAAACATACAGCT
TGTCCGGAAATAAAATAACATATCTTTAGTTAGTCAGGTTAAAAGTACCC
CAATCAAGAAAGAAACAAACATTGCATCGAACATTACATAACCATCCCCA
TTCCCAAAGGAAACTAATTGACTTTTCACAAAAGAAGATATCATAATGAA
ATTCGTATAAACATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036355XLOC_036355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057640-exon-scaffold_295-1491911889:13357..13724TCONS_00057640-exon-scaffold_295-1491911889:13357..13724Clytia hemisphaericaexon
TCONS_00057640-exon-scaffold_295-1510915933:13357..13724TCONS_00057640-exon-scaffold_295-1510915933:13357..13724Clytia hemisphaericaexon
TCONS_00057640-exon-scaffold_295-1575043694:13357..13724TCONS_00057640-exon-scaffold_295-1575043694:13357..13724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:13357..13724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11565	0.870349	0	0	0	0	0	0	0.564083	0.465805	1.13031	0.148604	0.593588	0.770559	1.01361	0.407908	0.670013	0.686741	4.03227	2.23384	0.647206	0.947053	1.53502	1.62815	0	0.213806	3.67147	7.18354	0.742972	0.756971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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