TCONS_00057640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057640
Unique NameTCONS_00057640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057640 ID=TCONS_00057640|Name=TCONS_00057640|organism=Clytia hemisphaerica|type=transcript|length=368bp
TTTAATGTTTATACGAATTTCATTATGATATCTTCTTTTGTGAAAAGTCA
ATTAGTTTCCTTTGGGAATGGGGATGGTTATGTAATGTTCGATGCAATGT
TTGTTTCTTTCTTGATTGGGGTACTTTTAACCTGACTAACTAAAGATATG
TTATTTTATTTCCGGACAAGCTGTATGTTTTAAGTCGTATGTCATTATTT
TTAAATCGTCATATTTTAAGATATTTATGAAACATTTATTGTTAGTTCTG
TTTTCATTTAGAAATATTATCAAAAATTAAGATCCTGACATGGCCTTTGA
AGACTTTATTTTCTCCAATGGACAACCCACTGTGGTTTTGAGAATCTAAA
AATTGACAAATTCAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_295:13357..13724

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057640 ID=TCONS_00057640|Name=TCONS_00057640|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at scaffold_295:13357..13724 (Clytia hemisphaerica)
TTTTTGAATTTGTCAATTTTTAGATTCTCAAAACCACAGTGGGTTGTCCA TTGGAGAAAATAAAGTCTTCAAAGGCCATGTCAGGATCTTAATTTTTGAT AATATTTCTAAATGAAAACAGAACTAACAATAAATGTTTCATAAATATCT TAAAATATGACGATTTAAAAATAATGACATACGACTTAAAACATACAGCT TGTCCGGAAATAAAATAACATATCTTTAGTTAGTCAGGTTAAAAGTACCC CAATCAAGAAAGAAACAAACATTGCATCGAACATTACATAACCATCCCCA TTCCCAAAGGAAACTAATTGACTTTTCACAAAAGAAGATATCATAATGAA ATTCGTATAAACATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036355XLOC_036355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057640-exon-scaffold_295-1491911889:13357..13724TCONS_00057640-exon-scaffold_295-1491911889:13357..13724Clytia hemisphaericaexon
TCONS_00057640-exon-scaffold_295-1510915933:13357..13724TCONS_00057640-exon-scaffold_295-1510915933:13357..13724Clytia hemisphaericaexon
TCONS_00057640-exon-scaffold_295-1575043694:13357..13724TCONS_00057640-exon-scaffold_295-1575043694:13357..13724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:13357..13724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (7.18354 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11565 0.870349 0 0 0 0 0 0 0.564083 0.465805 1.13031 0.148604 0.593588 0.770559 1.01361 0.407908 0.670013 0.686741 4.03227 2.23384 0.647206 0.947053 1.53502 1.62815 0 0.213806 3.67147 7.18354 0.742972 0.756971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350Sequence
Match NameE-valueIdentityDescription
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