TCONS_00057685 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057685
Unique Name	TCONS_00057685
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1776

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_297:121608..126559-

transcript sequence

>TCONS_00057685 ID=TCONS_00057685|Name=TCONS_00057685|organism=Clytia hemisphaerica|type=transcript|length=1776bp
atagAAACGATTTGATTTTCGAAACATTTATATTTCATTTAGCTACAATT
TGAGGAAGATGCGATGGAATTTGTTGGAACATTGAAAGGAGCCAAGGGAG
AGCAAGGCATTATGGGATTGAAAGGCGAGGAAGGAAAACAAGGACCTCAA
GGAGAACAGgGAATACAAGGTATCCAAGGGGAAAAAGGTGAAAGAGGTGC
TAGAGGAGAAAAGGGTGAACAAGGAATCGGTGAAGTTGGACCAAAAGGTG
AAAAAGGGGACAGTCTGAAAATATCAGAAGTTGCTCAAGAGGTTATTGGT
TTGGCAGAAAGAcAAATTCGAAAATTGAAGGGCGATCAAGGACCTCCAGG
TGATCAAGGGCCACGTGGTCTTCCTGGTGTTTCAGGGCCGCGAGGACCCA
AAGGAGAAGCTGGAGTTTCTACAGGAAGTAAAGCGAATGTGATATTAACG
GATCAAGATTTGGATATAATGGAAGATATGTTCGGCGTTGGTTCTCTTGC
ATTTGTTATCAGTACAAATAATTTGTTCATCAAATCTCTCAAAGGTTGGA
TCAGCATCCCCACCGAATCGAAATCAGGTCTTCTTGGCAAACTGACCACG
GATAGCAACGAGATTGCATCAGGTCCAACCGTGATCGAATTGACCAAGAA
ACAAATCACCGAACCCACTGATGTTGATAAGAAGTTGATCAAAGAAACCT
TGATTGTTCCACAGCCTGGGATTATGGCAAAAAGACCTTACTTGATGTTA
ATCGCTTTGAACGAGCCTTATTCTGGACGAATGGGAGGTTTAGCAAAGAT
TGATAAAATGTGTTCAACACAAGCCAAAGCAGCTGGATATTTCGGATTGA
AATTCCACACCTTGATCTCAGACAACTATAATGATATCGCAAATATGATT
CCTTTCCGAAGTCGTAAAAAACCAGTCGCTAATACCAGGGGTGAGCAGAT
CTTCCCACGTGCAGAAGATATCTACAAGAGTGATAATTACACTGCATTTA
ATCCAAACATCCCAATCTATTCTTTCGACCAAAAAGATGTTCGCCGACAT
GCTTCGTGGCCggtgaagaaattttggcacggTTCACACGCTAACGGAAA
ACTCCACTCAACGAAAATGAATTGTCGCAACTGGCGTTCTGAGCAACCTT
TCCATAAGGCAACCGCATCTTCCATTCTTACCTACACTCCTGCATTGAAT
GAGTTAGACGTACGCTGCGACCAAAAACTCATCGTCTTGTGCTTACAAGT
AAGATGAGGTCAAGTCCCAGGTTAGATGACATCAATTCTCTATAAAGGGA
ATCTAGTTGGGAATTTCGATGACGAGAAACACCACGGTATGAGAGAAAAG
CGTGGGCGATGAAATTCTATATATACCTACCTGTCTTTAATGTATAAAAC
GTGACCTTGAATAAGATAGTGGTAAAAAATTGGGTCTTACACATCACTAC
ACTACAAAATGATAATTTATAATAAGCAATATTTTTTAGATAGTTTTATA
GCAGATAGagcttttgttgaaaattttattctaaataatTTTATCATTGT
CTTTGGCCtaatttttggttaaaaaattcagaaCCAATCGAGAACTAGTT
TGAGTCCAAAATCGAACATTTTCAGGACCAAAGAGAATCTATGGATTAGA
CTTTttgttatttatattttattttctccttgtgtacatatttaattatt
tttttcaaaataaaatagtttttggaaataaaaaaattattttcaaaaaa
agtaagAAAGAAATTTAGAAATCTAG

Run BLAST on NCBI

transcript from alignment at scaffold_297:121608..126559-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057685 ID=TCONS_00057685|Name=TCONS_00057685|organism=Clytia hemisphaerica|type=transcript|length=4952bp|location=Sequence derived from alignment at scaffold_297:121608..126559- (Clytia hemisphaerica)
ATAGAAACGATTTGATTTTCGAAACATTTATATTTCATTTAGCTACAATT
TGAGGAAGATGCGATGGAATTTGTTGGAACATTGAAAGGAGCCAAGGGAG
AGCAAGGCATTATGGGATTGAAAGGCGAGGAAGGAAAACAAGGACCTCAA
GGAGAACAGGTAAGTTATATAGAATCTCTGTTTAGTTTGTCTATTATCAT
TTTTATCAAGAGTTCGCGAATAGAGCCTTTGGTTTGGGTTATAACCACTA
TAGCCAACTTAGTGAGGTTAACTCTCGCCCAAGTGAAGGTCCGGCAACAT
TATCACTTTAGAAGTTCAAGAAAGTATTTCTCAAAAAGTTAAAATCGCCC
ATGGGTGTTTTGGTCGATGCAGGCTACTTTAGATACTTACCACCTACCTG
AATCGTTGGGTTTTTCCTTCAATATGTGGATATATATATATTTCTTCATT
TTCTTCAGGGAATACAAGGTATCCAAGGGGAAAAAGGTGAAAGAGGTGCT
AGAGGAGAAAAGGTAGAGAAATATATCTTACTCGTTTATGACAAAGGAGG
ATTTGCTTTCAAGCAATTTAANATATTTCTTCATTTTCTTCAGGGAATAC
AAGGTATCCAAGGAGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGTA
GAGAAATATATCTTACTCGTTTATGACAAAGGAGGATTTGCTTTCAAGCA
ATTTAAAATCACTAATCTTAATACCACGCATGCAGCTGTCTAGAAGAAGC
CATTTCACACGCGATTTCAATTAATATTTAAGGCCTACATAATAATTTGG
GCCTTATCTAAAACACTATAATTGTCTTAAAACAAACATCATTTTTCACG
TTATTGATTAGCAAACTCCATTTCCTGATTAGGGTGAACAAGGAATCGGT
GAAGTTGGACCAAAAGGTGAAAAAGGGGACAGTCTGAAAATATCAGAAGT
TGCTCAAGAGGTTATTGGTTTGGCAGAAAGACGTAAGTTTATTTTTCTCC
AATACTTAGAGGGGTTCTGATAAATTCCGATGGTGGATTGGCGGATTGGC
GGCCGCCCACGCTAAAGCTCTAAAAGGAGCGGGCCAATTTCCCATCGGAG
AGGAATGATAGTCGGCCTTTGATGTACTGCATTCCCAGTCAGGTTCAGCC
ACCCTTGTGCGTAAGGCTGAAAATATTTAGGTTAGACCCGTTAATCCCCG
AAAACATCGGCTGGGGTCGAAGACTCCCGCTGCAAAATCCCTGACGCAGT
CTTGCAAAATTCCGTAATCCAAACCTTCCACATATTGAAAATTTCCCGAC
CTTCAGAGTTTTAGCGAGTGCAGATTCCCAGCTAGCACACAACGTTATTT
CAATGTTTTTCCGTATAACGTTAGACGGATGTTGAGACAACGTTGCGTGC
CTGCAGGTTTTCCCTTCCCACTACCTTCCTCCTGAACAGATTAACTTACT
AGCTTGTAATTGAGGTTTTTGTATTTATCACAGAAATTCGAAAATTGAAG
GGCGATCAAGGACCTCCAGGTGATCAAGGGCCACGTGGTCTTCCTGGTGT
TTCAGGGCCGCGAGGACCCAAAGGAGAAGCTGGAGTTTCTACAGGAAGTA
AAGTAAGTAGAAATATGTCATCAAAAATATACTTTCTAAATAAAATATTC
GCTTCCCGTTGTATTGAAAACTATTTTCAAAATTGCTCCCGATAACGTCG
TTATAATTTGTAAATGGCTATTAGAGCTTTTTATCCGATAAGCGATGTCG
GATATATCCTCTTAATCGATGCATCTAGGTAGACAGAACGATACCCAAAT
TCGTTAAAACGCTGATTTCAGAAGCACTATCAAAGTTTTTCCCAACTCCT
ATTCTTTTTAATATAATTACAATGACAAATTGTTGTTTTCTGTAGGCGAA
TGTGATATTAACGGATCAAGATTTGGATATAATGGAAGATATGTTCGGCG
TTGGTTCTCTTGCATTTGTTATCAGTACAAATAATTTGTTCATCAAATCT
CTCAAAGGTTGGATCAGCATCCCCGTAAGTTCTTTGGTTTTGATTGAGAT
ATATTCATTCTCACCAGTTTTTTGTGAGACTTATCTCATTTATTTTATCC
CAAGTCTGCCCTTTAGATTCTTATACACTTTATACAAGCTTGAATATTTC
CATAATACCTGTGAGCCATGTAAGCCATGCATTTTTTGAGATCTAAACCC
TCAAATATCTTTTTCAACCTTAAGTAAATGTAAAACTTAAAACTTTACTT
GTAATTTTATCCCATTTCTATCACCATAGACCGAATCGAAATCAGGTCTT
CTTGGCAAACTGACCACGGATAGCAACGAGATTGCATCAGGTCCAACCGT
GATCGAATTGACCAAGAAACAAATCACCGAACCCACTGATGTTGTAAGTG
GTGGCTCTTCTTTCCTTGGCAATTTCTTTTGCTACTTTTATTCGTATTGA
GTCACGACAGTAGAAATCAATCAATCAATTGTAAACATGATTCAAAGAAA
TCGATTTTTTAATTAAAGTTTTGCCACATAAAATACTAAGGAGGCCCTAA
ACTAAAAATTGCATCGTAGACCAAATTCATAGAAATTTCGAATAAAGTTT
CTCCAATTGGACTATAGAGTTTCACTGGATTGTAAATTTTCGTCTTGTAT
CATCATAGGATAAGAAGTTGATCAAAGAAACCTTGATTGTTCCACAGCNT
GTTCTGTATCATCATAGGATAAGAAGTTGATCAAAGAAACCTTGATTGTT
CCACAGCCTGGGATTATGGCAAAAAGACCTTACGTAAGTTAACTTTTGCA
AAAAAAATATTTCTTTTTTTTGAAAATCAAAACATATCACTACAGGCGGC
TTGTATTGTCCTTGTCGTTGATTGATGTTTGACCCTGCCTTCATTTCGAA
CAATCTTTTCGACAGAAATTTCCAATCTTTCCACTTGCATCAACCGCTAT
TCAACCGACACCTCTGAATTAAGAAATGACTTAAAAAATCTTCCCTTTTC
AGTTGATGTTAATCGCTTTGAACGAGCCTTATTCTGGACGAATGGGAGGT
TTAGCAAAGATTGATAAAATGTGTTCAACACAAGCCAAAGCAGCTGGATA
TTTCGGATTGAAATTCCACACCTTGATCTCAGACAACTATAATGATATCG
CAAATATGATTCCTTTCCGAAGTCGTAAAAAACCAGTCGCTAATACCAGG
GTATGTACCGGAGATTCCAGTTAACTTTACGTTGTGCTGTTTAAGAATCA
ATGATAATTGTATTATAATATAAGATCTTCTTTTCTTGATATTTCTATTT
CTCCACAAACCGATCTTCTCTCTAATCAGACAATCTCTTTCAAATGAATT
ATTATTATTCACCTTAGCTAGTTTTTTTTCATTCTTGGTTTCGACCTCCA
ATGTCATTTGAACATCTACCTAGCCTGGAAGCCGACTTCCTGACCAGGGA
TATATTCAAATGATTCGAGGTTTAAGAACCTTCACGAAGAAGGAAAATAC
TTACTATCTTACTATCTTCTTACAGGGTGAGCAGATCTTCCCACGTGCAG
AAGATATCTACAAGAGTGATAATTACACTGCATTTAATCCAAACATCCCA
ATCTATTCTTTCGACCAAAAAGATGTTCGCCGACATGCTTCGTGGTAAGA
TTAAGATGTTTCTTTTTTGTTAAAAAGATACAGAAAATAGGTTCTAATGA
CAAGATCCCGAAAAAATAGAACAGTCTTAAAAATCACAAAACTATAGAAT
CACTTTCCAATCTCGTCCCCGTGTATCCCAGGCTTTATTTACGTTACTTA
TGGACGTCATAGAGAATATTTAGCGCCATATAGTTGAAGCATAAAAAAGC
TGATAATACCAGGGAACGAGGTTGATCACGTCCTTCAATCAAAGTGCTGA
TTGTGGTGATTGACGTGATGAAAGCCTTTCGCTAGCGCTATCAGACTCTT
AGCGAACTAAGAGACTCTACAACCGAGAATTAAGTTTGACCTCCCTATCT
CTCTCTATTTATGACTTGGCTCCCAAAAATATAAAAGCTTCTTTTTCCTT
CCAAGACCTTGAATAAGGTGCAATATAGTCAGTCACCTCATTGAAAAAAA
TACTAATGTAAAGGAGGTCTTCTCCTCCTCTCGATAACATTCTGTTATAC
AATTGATTTTTCACTCAAACTGGACCTCTCTCGAATTCTAATGAAATGCA
CTGTATAACACTTCTACTTGAACTTATTTTGTAGGCCGGTGAAGAAATTT
TGGCACGGTTCACACGCTAACGGAAAACTCCACTCAACGAAAATGAATTG
TCGCAACTGGCGTTCTGAGCAACCTTTCCATAAGGCAACCGCATCTTCCA
TTCTTACCTACACTCCTGCATTGAATGAGTTAGACGTACGCTGCGACCAA
AAACTCATCGTCTTGTGCTTACAAGTAAGATGAGGTCAAGTCCCAGGTTA
GATGACATCAATTCTCTATAAAGGGAATCTAGTTGGGAATTTCGATGACG
AGAAACACCACGGTATGAGAGAAAAGCGTGGGCGATGAAATTCTATATAT
ACCTACCTGTCTTTAATGTATAAAACGTGACCTTGAATAAGATAGTGGTA
AAAAATTGGGTCTTACACATCACTACACTACAAAATGATAATTTATAATA
AGCAATATTTTTTAGATAGTTTTATAGCAGATAGAGCTTTTGTTGAAAAT
TTTATTCTAAATAATTTTATCATTGTCTTTGGCCTAATTTTTGGTTAAAA
AATTCAGAACCAATCGAGAACTAGTTTGAGTCCAAAATCGAACATTTTCA
GGACCAAAGAGAATCTATGGATTAGACTTTTTGTTATTTATATTTTATTT
TCTCCTTGTGTACATATTTAATTATTTTTTTCAAAATAAAATAGTTTTTG
GAAATAAAAAAATTATTTTCAAAAAAAGTAAGAAAGAAATTTAGAAATCT
AG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036375	XLOC_036375	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_297	supercontig	scaffold_297:121608..126559 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0291982	0.000400337	0	1.35301	14.6665	13.6479	64.9188	70.953	6.3459	10.4705	2.8971	1.57317	2.71888	1.0265	2.30968	0.00808912	8.41454	6.37431	6.10344	2.152	0.0305405	0.104872	0.884383	2.22586	31.9308	31.4193	15.2354	9.67743	0.0967629	4.70651

Blast

[Close]

BLAST of TCONS_00057685 vs. Swiss-Prot (Human)
Match: COIA1 (Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 1.570e-23
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 1

Query:  733 RPYLMLIALNEPYSGRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKK-PVANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKFWHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQKLIVLCLQ 1248
            +P L L+ALN P SG M G+   D  C  QA+A G  G  F   +S    D+ +++    R   P+ N + E +FP  E ++ S +     P   I+SFD KDV RH +WP K  WHGS  NG+   T+  C  WR+E P     ASS+L     L +    C    IVLC++
Sbjct: 1578 QPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAG-TFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALF-SGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGR-RLTESYCETWRTEAPSATGQASSLLG-GRLLGQSAASCHHAYIVLCIE 1746

The following BLAST results are available for this feature:

BLAST of TCONS_00057685 vs. Swiss-Prot (Human)

BLAST of TCONS_00057685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COIA1	1.570e-23	36.99	Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=C...	[more]

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TCONS_00057685 (transcript) - C. hemisphaerica