TCONS_00057686 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057686
Unique Name	TCONS_00057686
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1753

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_297:121608..126780-

transcript sequence

>TCONS_00057686 ID=TCONS_00057686|Name=TCONS_00057686|organism=Clytia hemisphaerica|type=transcript|length=1753bp
gcttATCAACAGCAAGTTTCTACAATTTGAGGAAGATGCGATGGAATTTG
TTGGAACATTGAAAGGAGCCAAGGGAGAGCAAGGCATTATGGGATTGAAA
GGCGAGGAAGGAAAACAAGGACCTCAAGGAGAACAGgGAATACAAGGTAT
CCAAGGGGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGGTGAACAAG
GAATCGGTGAAGTTGGACCAAAAGGTGAAAAAGGGGACAGTCTGAAAATA
TCAGAAGTTGCTCAAGAGGTTATTGGTTTGGCAGAAAGAcAAATTCGAAA
ATTGAAGGGCGATCAAGGACCTCCAGGTGATCAAGGGCCACGTGGTCTTC
CTGGTGTTTCAGGGCCGCGAGGACCCAAAGGAGAAGCTGGAGTTTCTACA
GGAAGTAAAGCGAATGTGATATTAACGGATCAAGATTTGGATATAATGGA
AGATATGTTCGGCGTTGGTTCTCTTGCATTTGTTATCAGTACAAATAATT
TGTTCATCAAATCTCTCAAAGGTTGGATCAGCATCCCCACCGAATCGAAA
TCAGGTCTTCTTGGCAAACTGACCACGGATAGCAACGAGATTGCATCAGG
TCCAACCGTGATCGAATTGACCAAGAAACAAATCACCGAACCCACTGATG
TTGATAAGAAGTTGATCAAAGAAACCTTGATTGTTCCACAGCCTGGGATT
ATGGCAAAAAGACCTTACTTGATGTTAATCGCTTTGAACGAGCCTTATTC
TGGACGAATGGGAGGTTTAGCAAAGATTGATAAAATGTGTTCAACACAAG
CCAAAGCAGCTGGATATTTCGGATTGAAATTCCACACCTTGATCTCAGAC
AACTATAATGATATCGCAAATATGATTCCTTTCCGAAGTCGTAAAAAACC
AGTCGCTAATACCAGGGGTGAGCAGATCTTCCCACGTGCAGAAGATATCT
ACAAGAGTGATAATTACACTGCATTTAATCCAAACATCCCAATCTATTCT
TTCGACCAAAAAGATGTTCGCCGACATGCTTCGTGGCCggtgaagaaatt
ttggcacggTTCACACGCTAACGGAAAACTCCACTCAACGAAAATGAATT
GTCGCAACTGGCGTTCTGAGCAACCTTTCCATAAGGCAACCGCATCTTCC
ATTCTTACCTACACTCCTGCATTGAATGAGTTAGACGTACGCTGCGACCA
AAAACTCATCGTCTTGTGCTTACAAGTAAGATGAGGTCAAGTCCCAGGTT
AGATGACATCAATTCTCTATAAAGGGAATCTAGTTGGGAATTTCGATGAC
GAGAAACACCACGGTATGAGAGAAAAGCGTGGGCGATGAAATTCTATATA
TACCTACCTGTCTTTAATGTATAAAACGTGACCTTGAATAAGATAGTGGT
AAAAAATTGGGTCTTACACATCACTACACTACAAAATGATAATTTATAAT
AAGCAATATTTTTTAGATAGTTTTATAGCAGATAGagcttttgttgaaaa
ttttattctaaataatTTTATCATTGTCTTTGGCCtaatttttggttaaa
aaattcagaaCCAATCGAGAACTAGTTTGAGTCCAAAATCGAACATTTTC
AGGACCAAAGAGAATCTATGGATTAGACTTTttgttatttatattttatt
ttctccttgtgtacatatttaattatttttttcaaaataaaatagttttt
ggaaataaaaaaattattttcaaaaaaagtaagAAAGAAATTTAGAAATC
TAG

Run BLAST on NCBI

transcript from alignment at scaffold_297:121608..126780-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057686 ID=TCONS_00057686|Name=TCONS_00057686|organism=Clytia hemisphaerica|type=transcript|length=5173bp|location=Sequence derived from alignment at scaffold_297:121608..126780- (Clytia hemisphaerica)
GCTTATCAACAGCAAGTTTGTAAGTTCAAAAGATTTTACTGTTCAATTTT
ATTTTAAATCGTTATTTTGAGTTTAAGATATTGACTAAGTCCCATGTGTA
CTTTTTATCAAATCAGCCAAGCTATTGGTTGTTTACCAGGGTAGGCCATT
TTGGGAAAGATTTATGGGAAAAGCTGCATTTGCAAAAAATAAATTAATCA
ACCCTCTCAAAAGAATATTTTATAGAAACGATTTGATTTTCGAAACATTT
ATATTTCATTTAGCTACAATTTGAGGAAGATGCGATGGAATTTGTTGGAA
CATTGAAAGGAGCCAAGGGAGAGCAAGGCATTATGGGATTGAAAGGCGAG
GAAGGAAAACAAGGACCTCAAGGAGAACAGGTAAGTTATATAGAATCTCT
GTTTAGTTTGTCTATTATCATTTTTATCAAGAGTTCGCGAATAGAGCCTT
TGGTTTGGGTTATAACCACTATAGCCAACTTAGTGAGGTTAACTCTCGCC
CAAGTGAAGGTCCGGCAACATTATCACTTTAGAAGTTCAAGAAAGTATTT
CTCAAAAAGTTAAAATCGCCCATGGGTGTTTTGGTCGATGCAGGCTACTT
TAGATACTTACCACCTACCTGAATCGTTGGGTTTTTCCTTCAATATGTGG
ATATATATATATTTCTTCATTTTCTTCAGGGAATACAAGGTATCCAAGGG
GAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGTAGAGAAATATATCTT
ACTCGTTTATGACAAAGGAGGATTTGCTTTCAAGCAATTTAANATATTTC
TTCATTTTCTTCAGGGAATACAAGGTATCCAAGGAGAAAAAGGTGAAAGA
GGTGCTAGAGGAGAAAAGGTAGAGAAATATATCTTACTCGTTTATGACAA
AGGAGGATTTGCTTTCAAGCAATTTAAAATCACTAATCTTAATACCACGC
ATGCAGCTGTCTAGAAGAAGCCATTTCACACGCGATTTCAATTAATATTT
AAGGCCTACATAATAATTTGGGCCTTATCTAAAACACTATAATTGTCTTA
AAACAAACATCATTTTTCACGTTATTGATTAGCAAACTCCATTTCCTGAT
TAGGGTGAACAAGGAATCGGTGAAGTTGGACCAAAAGGTGAAAAAGGGGA
CAGTCTGAAAATATCAGAAGTTGCTCAAGAGGTTATTGGTTTGGCAGAAA
GACGTAAGTTTATTTTTCTCCAATACTTAGAGGGGTTCTGATAAATTCCG
ATGGTGGATTGGCGGATTGGCGGCCGCCCACGCTAAAGCTCTAAAAGGAG
CGGGCCAATTTCCCATCGGAGAGGAATGATAGTCGGCCTTTGATGTACTG
CATTCCCAGTCAGGTTCAGCCACCCTTGTGCGTAAGGCTGAAAATATTTA
GGTTAGACCCGTTAATCCCCGAAAACATCGGCTGGGGTCGAAGACTCCCG
CTGCAAAATCCCTGACGCAGTCTTGCAAAATTCCGTAATCCAAACCTTCC
ACATATTGAAAATTTCCCGACCTTCAGAGTTTTAGCGAGTGCAGATTCCC
AGCTAGCACACAACGTTATTTCAATGTTTTTCCGTATAACGTTAGACGGA
TGTTGAGACAACGTTGCGTGCCTGCAGGTTTTCCCTTCCCACTACCTTCC
TCCTGAACAGATTAACTTACTAGCTTGTAATTGAGGTTTTTGTATTTATC
ACAGAAATTCGAAAATTGAAGGGCGATCAAGGACCTCCAGGTGATCAAGG
GCCACGTGGTCTTCCTGGTGTTTCAGGGCCGCGAGGACCCAAAGGAGAAG
CTGGAGTTTCTACAGGAAGTAAAGTAAGTAGAAATATGTCATCAAAAATA
TACTTTCTAAATAAAATATTCGCTTCCCGTTGTATTGAAAACTATTTTCA
AAATTGCTCCCGATAACGTCGTTATAATTTGTAAATGGCTATTAGAGCTT
TTTATCCGATAAGCGATGTCGGATATATCCTCTTAATCGATGCATCTAGG
TAGACAGAACGATACCCAAATTCGTTAAAACGCTGATTTCAGAAGCACTA
TCAAAGTTTTTCCCAACTCCTATTCTTTTTAATATAATTACAATGACAAA
TTGTTGTTTTCTGTAGGCGAATGTGATATTAACGGATCAAGATTTGGATA
TAATGGAAGATATGTTCGGCGTTGGTTCTCTTGCATTTGTTATCAGTACA
AATAATTTGTTCATCAAATCTCTCAAAGGTTGGATCAGCATCCCCGTAAG
TTCTTTGGTTTTGATTGAGATATATTCATTCTCACCAGTTTTTTGTGAGA
CTTATCTCATTTATTTTATCCCAAGTCTGCCCTTTAGATTCTTATACACT
TTATACAAGCTTGAATATTTCCATAATACCTGTGAGCCATGTAAGCCATG
CATTTTTTGAGATCTAAACCCTCAAATATCTTTTTCAACCTTAAGTAAAT
GTAAAACTTAAAACTTTACTTGTAATTTTATCCCATTTCTATCACCATAG
ACCGAATCGAAATCAGGTCTTCTTGGCAAACTGACCACGGATAGCAACGA
GATTGCATCAGGTCCAACCGTGATCGAATTGACCAAGAAACAAATCACCG
AACCCACTGATGTTGTAAGTGGTGGCTCTTCTTTCCTTGGCAATTTCTTT
TGCTACTTTTATTCGTATTGAGTCACGACAGTAGAAATCAATCAATCAAT
TGTAAACATGATTCAAAGAAATCGATTTTTTAATTAAAGTTTTGCCACAT
AAAATACTAAGGAGGCCCTAAACTAAAAATTGCATCGTAGACCAAATTCA
TAGAAATTTCGAATAAAGTTTCTCCAATTGGACTATAGAGTTTCACTGGA
TTGTAAATTTTCGTCTTGTATCATCATAGGATAAGAAGTTGATCAAAGAA
ACCTTGATTGTTCCACAGCNTGTTCTGTATCATCATAGGATAAGAAGTTG
ATCAAAGAAACCTTGATTGTTCCACAGCCTGGGATTATGGCAAAAAGACC
TTACGTAAGTTAACTTTTGCAAAAAAAATATTTCTTTTTTTTGAAAATCA
AAACATATCACTACAGGCGGCTTGTATTGTCCTTGTCGTTGATTGATGTT
TGACCCTGCCTTCATTTCGAACAATCTTTTCGACAGAAATTTCCAATCTT
TCCACTTGCATCAACCGCTATTCAACCGACACCTCTGAATTAAGAAATGA
CTTAAAAAATCTTCCCTTTTCAGTTGATGTTAATCGCTTTGAACGAGCCT
TATTCTGGACGAATGGGAGGTTTAGCAAAGATTGATAAAATGTGTTCAAC
ACAAGCCAAAGCAGCTGGATATTTCGGATTGAAATTCCACACCTTGATCT
CAGACAACTATAATGATATCGCAAATATGATTCCTTTCCGAAGTCGTAAA
AAACCAGTCGCTAATACCAGGGTATGTACCGGAGATTCCAGTTAACTTTA
CGTTGTGCTGTTTAAGAATCAATGATAATTGTATTATAATATAAGATCTT
CTTTTCTTGATATTTCTATTTCTCCACAAACCGATCTTCTCTCTAATCAG
ACAATCTCTTTCAAATGAATTATTATTATTCACCTTAGCTAGTTTTTTTT
CATTCTTGGTTTCGACCTCCAATGTCATTTGAACATCTACCTAGCCTGGA
AGCCGACTTCCTGACCAGGGATATATTCAAATGATTCGAGGTTTAAGAAC
CTTCACGAAGAAGGAAAATACTTACTATCTTACTATCTTCTTACAGGGTG
AGCAGATCTTCCCACGTGCAGAAGATATCTACAAGAGTGATAATTACACT
GCATTTAATCCAAACATCCCAATCTATTCTTTCGACCAAAAAGATGTTCG
CCGACATGCTTCGTGGTAAGATTAAGATGTTTCTTTTTTGTTAAAAAGAT
ACAGAAAATAGGTTCTAATGACAAGATCCCGAAAAAATAGAACAGTCTTA
AAAATCACAAAACTATAGAATCACTTTCCAATCTCGTCCCCGTGTATCCC
AGGCTTTATTTACGTTACTTATGGACGTCATAGAGAATATTTAGCGCCAT
ATAGTTGAAGCATAAAAAAGCTGATAATACCAGGGAACGAGGTTGATCAC
GTCCTTCAATCAAAGTGCTGATTGTGGTGATTGACGTGATGAAAGCCTTT
CGCTAGCGCTATCAGACTCTTAGCGAACTAAGAGACTCTACAACCGAGAA
TTAAGTTTGACCTCCCTATCTCTCTCTATTTATGACTTGGCTCCCAAAAA
TATAAAAGCTTCTTTTTCCTTCCAAGACCTTGAATAAGGTGCAATATAGT
CAGTCACCTCATTGAAAAAAATACTAATGTAAAGGAGGTCTTCTCCTCCT
CTCGATAACATTCTGTTATACAATTGATTTTTCACTCAAACTGGACCTCT
CTCGAATTCTAATGAAATGCACTGTATAACACTTCTACTTGAACTTATTT
TGTAGGCCGGTGAAGAAATTTTGGCACGGTTCACACGCTAACGGAAAACT
CCACTCAACGAAAATGAATTGTCGCAACTGGCGTTCTGAGCAACCTTTCC
ATAAGGCAACCGCATCTTCCATTCTTACCTACACTCCTGCATTGAATGAG
TTAGACGTACGCTGCGACCAAAAACTCATCGTCTTGTGCTTACAAGTAAG
ATGAGGTCAAGTCCCAGGTTAGATGACATCAATTCTCTATAAAGGGAATC
TAGTTGGGAATTTCGATGACGAGAAACACCACGGTATGAGAGAAAAGCGT
GGGCGATGAAATTCTATATATACCTACCTGTCTTTAATGTATAAAACGTG
ACCTTGAATAAGATAGTGGTAAAAAATTGGGTCTTACACATCACTACACT
ACAAAATGATAATTTATAATAAGCAATATTTTTTAGATAGTTTTATAGCA
GATAGAGCTTTTGTTGAAAATTTTATTCTAAATAATTTTATCATTGTCTT
TGGCCTAATTTTTGGTTAAAAAATTCAGAACCAATCGAGAACTAGTTTGA
GTCCAAAATCGAACATTTTCAGGACCAAAGAGAATCTATGGATTAGACTT
TTTGTTATTTATATTTTATTTTCTCCTTGTGTACATATTTAATTATTTTT
TTCAAAATAAAATAGTTTTTGGAAATAAAAAAATTATTTTCAAAAAAAGT
AAGAAAGAAATTTAGAAATCTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036375	XLOC_036375	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_297	supercontig	scaffold_297:121608..126780 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13101e-05	5.8645e-05	0.690277	0.000558323	7.21541e-10	2.38043e-09	6.8029e-07	0	1.27969e-06	3.11828e-07	0	2.17339e-05	1.32715e-07	0	0.0033262	0	3.26089e-09	7.03475e-07	9.36162e-08	2.69112e-07	0.0673063	0.0992936	1.97853e-07	3.27254e-06	2.98285e-05	0	6.6668e-05	0.000771012	0.00152299	0.000184122

Blast

[Close]

BLAST of TCONS_00057686 vs. Swiss-Prot (Human)
Match: COIA1 (Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 1.490e-23
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 2

Query:  710 RPYLMLIALNEPYSGRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKK-PVANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKFWHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQKLIVLCLQ 1225
            +P L L+ALN P SG M G+   D  C  QA+A G  G  F   +S    D+ +++    R   P+ N + E +FP  E ++ S +     P   I+SFD KDV RH +WP K  WHGS  NG+   T+  C  WR+E P     ASS+L     L +    C    IVLC++
Sbjct: 1578 QPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAG-TFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALF-SGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGR-RLTESYCETWRTEAPSATGQASSLLG-GRLLGQSAASCHHAYIVLCIE 1746

The following BLAST results are available for this feature:

BLAST of TCONS_00057686 vs. Swiss-Prot (Human)

BLAST of TCONS_00057686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COIA1	1.490e-23	36.99	Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=C...	[more]

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TCONS_00057686 (transcript) - C. hemisphaerica