TCONS_00057689 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00057689
Unique Name	TCONS_00057689
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1754

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_297:121608..126781-

transcript sequence

>TCONS_00057689 ID=TCONS_00057689|Name=TCONS_00057689|organism=Clytia hemisphaerica|type=transcript|length=1754bp
agcttATCAACAGCAAGTTTCTACAATTTGAGGAAGATGCGATGGAATTT
GTTGGAACATTGAAAGGAGCCAAGGGAGAGCAAGGCATTATGGGATTGAA
AGGCGAGGAAGGAAAACAAGGACCTCAAGGAGAACAGgGAATACAAGGTA
TCCAAGGGGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGGTGAACAA
GGAATCGGTGAAGTTGGACCAAAAGGTGAAAAAGGGGACAGTCTGAAAAT
ATCAGAAGTTGCTCAAGAGGTTATTGGTTTGGCAGAAAGAcAAATTCGAA
AATTGAAGGGCGATCAAGGACCTCCAGGTGATCAAGGGCCACGTGGTCTT
CCTGGTGTTTCAGGGCCGCGAGGACCCAAAGGAGAAGCTGGAGTTTCTAC
AGGAAGTAAAGCGAATGTGATATTAACGGATCAAGATTTGGATATAATGG
AAGATATGTTCGGCGTTGGTTCTCTTGCATTTGTTATCAGTACAAATAAT
TTGTTCATCAAATCTCTCAAAGGTTGGATCAGCATCCCCACCGAATCGAA
ATCAGGTCTTCTTGGCAAACTGACCACGGATAGCAACGAGATTGCATCAG
GTCCAACCGTGATCGAATTGACCAAGAAACAAATCACCGAACCCACTGAT
GTTGATAAGAAGTTGATCAAAGAAACCTTGATTGTTCCACAGCCTGGGAT
TATGGCAAAAAGACCTTACTTGATGTTAATCGCTTTGAACGAGCCTTATT
CTGGACGAATGGGAGGTTTAGCAAAGATTGATAAAATGTGTTCAACACAA
GCCAAAGCAGCTGGATATTTCGGATTGAAATTCCACACCTTGATCTCAGA
CAACTATAATGATATCGCAAATATGATTCCTTTCCGAAGTCGTAAAAAAC
CAGTCGCTAATACCAGGGGTGAGCAGATCTTCCCACGTGCAGAAGATATC
TACAAGAGTGATAATTACACTGCATTTAATCCAAACATCCCAATCTATTC
TTTCGACCAAAAAGATGTTCGCCGACATGCTTCGTGGCCggtgaagaaat
tttggcacggTTCACACGCTAACGGAAAACTCCACTCAACGAAAATGAAT
TGTCGCAACTGGCGTTCTGAGCAACCTTTCCATAAGGCAACCGCATCTTC
CATTCTTACCTACACTCCTGCATTGAATGAGTTAGACGTACGCTGCGACC
AAAAACTCATCGTCTTGTGCTTACAAGTAAGATGAGGTCAAGTCCCAGGT
TAGATGACATCAATTCTCTATAAAGGGAATCTAGTTGGGAATTTCGATGA
CGAGAAACACCACGGTATGAGAGAAAAGCGTGGGCGATGAAATTCTATAT
ATACCTACCTGTCTTTAATGTATAAAACGTGACCTTGAATAAGATAGTGG
TAAAAAATTGGGTCTTACACATCACTACACTACAAAATGATAATTTATAA
TAAGCAATATTTTTTAGATAGTTTTATAGCAGATAGagcttttgttgaaa
attttattctaaataatTTTATCATTGTCTTTGGCCtaatttttggttaa
aaaattcagaaCCAATCGAGAACTAGTTTGAGTCCAAAATCGAACATTTT
CAGGACCAAAGAGAATCTATGGATTAGACTTTttgttatttatattttat
tttctccttgtgtacatatttaattatttttttcaaaataaaatagtttt
tggaaataaaaaaattattttcaaaaaaagtaagAAAGAAATTTAGAAAT
CTAG

Run BLAST on NCBI

transcript from alignment at scaffold_297:121608..126781-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00057689 ID=TCONS_00057689|Name=TCONS_00057689|organism=Clytia hemisphaerica|type=transcript|length=5174bp|location=Sequence derived from alignment at scaffold_297:121608..126781- (Clytia hemisphaerica)
AGCTTATCAACAGCAAGTTTGTAAGTTCAAAAGATTTTACTGTTCAATTT
TATTTTAAATCGTTATTTTGAGTTTAAGATATTGACTAAGTCCCATGTGT
ACTTTTTATCAAATCAGCCAAGCTATTGGTTGTTTACCAGGGTAGGCCAT
TTTGGGAAAGATTTATGGGAAAAGCTGCATTTGCAAAAAATAAATTAATC
AACCCTCTCAAAAGAATATTTTATAGAAACGATTTGATTTTCGAAACATT
TATATTTCATTTAGCTACAATTTGAGGAAGATGCGATGGAATTTGTTGGA
ACATTGAAAGGAGCCAAGGGAGAGCAAGGCATTATGGGATTGAAAGGCGA
GGAAGGAAAACAAGGACCTCAAGGAGAACAGGTAAGTTATATAGAATCTC
TGTTTAGTTTGTCTATTATCATTTTTATCAAGAGTTCGCGAATAGAGCCT
TTGGTTTGGGTTATAACCACTATAGCCAACTTAGTGAGGTTAACTCTCGC
CCAAGTGAAGGTCCGGCAACATTATCACTTTAGAAGTTCAAGAAAGTATT
TCTCAAAAAGTTAAAATCGCCCATGGGTGTTTTGGTCGATGCAGGCTACT
TTAGATACTTACCACCTACCTGAATCGTTGGGTTTTTCCTTCAATATGTG
GATATATATATATTTCTTCATTTTCTTCAGGGAATACAAGGTATCCAAGG
GGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGTAGAGAAATATATCT
TACTCGTTTATGACAAAGGAGGATTTGCTTTCAAGCAATTTAANATATTT
CTTCATTTTCTTCAGGGAATACAAGGTATCCAAGGAGAAAAAGGTGAAAG
AGGTGCTAGAGGAGAAAAGGTAGAGAAATATATCTTACTCGTTTATGACA
AAGGAGGATTTGCTTTCAAGCAATTTAAAATCACTAATCTTAATACCACG
CATGCAGCTGTCTAGAAGAAGCCATTTCACACGCGATTTCAATTAATATT
TAAGGCCTACATAATAATTTGGGCCTTATCTAAAACACTATAATTGTCTT
AAAACAAACATCATTTTTCACGTTATTGATTAGCAAACTCCATTTCCTGA
TTAGGGTGAACAAGGAATCGGTGAAGTTGGACCAAAAGGTGAAAAAGGGG
ACAGTCTGAAAATATCAGAAGTTGCTCAAGAGGTTATTGGTTTGGCAGAA
AGACGTAAGTTTATTTTTCTCCAATACTTAGAGGGGTTCTGATAAATTCC
GATGGTGGATTGGCGGATTGGCGGCCGCCCACGCTAAAGCTCTAAAAGGA
GCGGGCCAATTTCCCATCGGAGAGGAATGATAGTCGGCCTTTGATGTACT
GCATTCCCAGTCAGGTTCAGCCACCCTTGTGCGTAAGGCTGAAAATATTT
AGGTTAGACCCGTTAATCCCCGAAAACATCGGCTGGGGTCGAAGACTCCC
GCTGCAAAATCCCTGACGCAGTCTTGCAAAATTCCGTAATCCAAACCTTC
CACATATTGAAAATTTCCCGACCTTCAGAGTTTTAGCGAGTGCAGATTCC
CAGCTAGCACACAACGTTATTTCAATGTTTTTCCGTATAACGTTAGACGG
ATGTTGAGACAACGTTGCGTGCCTGCAGGTTTTCCCTTCCCACTACCTTC
CTCCTGAACAGATTAACTTACTAGCTTGTAATTGAGGTTTTTGTATTTAT
CACAGAAATTCGAAAATTGAAGGGCGATCAAGGACCTCCAGGTGATCAAG
GGCCACGTGGTCTTCCTGGTGTTTCAGGGCCGCGAGGACCCAAAGGAGAA
GCTGGAGTTTCTACAGGAAGTAAAGTAAGTAGAAATATGTCATCAAAAAT
ATACTTTCTAAATAAAATATTCGCTTCCCGTTGTATTGAAAACTATTTTC
AAAATTGCTCCCGATAACGTCGTTATAATTTGTAAATGGCTATTAGAGCT
TTTTATCCGATAAGCGATGTCGGATATATCCTCTTAATCGATGCATCTAG
GTAGACAGAACGATACCCAAATTCGTTAAAACGCTGATTTCAGAAGCACT
ATCAAAGTTTTTCCCAACTCCTATTCTTTTTAATATAATTACAATGACAA
ATTGTTGTTTTCTGTAGGCGAATGTGATATTAACGGATCAAGATTTGGAT
ATAATGGAAGATATGTTCGGCGTTGGTTCTCTTGCATTTGTTATCAGTAC
AAATAATTTGTTCATCAAATCTCTCAAAGGTTGGATCAGCATCCCCGTAA
GTTCTTTGGTTTTGATTGAGATATATTCATTCTCACCAGTTTTTTGTGAG
ACTTATCTCATTTATTTTATCCCAAGTCTGCCCTTTAGATTCTTATACAC
TTTATACAAGCTTGAATATTTCCATAATACCTGTGAGCCATGTAAGCCAT
GCATTTTTTGAGATCTAAACCCTCAAATATCTTTTTCAACCTTAAGTAAA
TGTAAAACTTAAAACTTTACTTGTAATTTTATCCCATTTCTATCACCATA
GACCGAATCGAAATCAGGTCTTCTTGGCAAACTGACCACGGATAGCAACG
AGATTGCATCAGGTCCAACCGTGATCGAATTGACCAAGAAACAAATCACC
GAACCCACTGATGTTGTAAGTGGTGGCTCTTCTTTCCTTGGCAATTTCTT
TTGCTACTTTTATTCGTATTGAGTCACGACAGTAGAAATCAATCAATCAA
TTGTAAACATGATTCAAAGAAATCGATTTTTTAATTAAAGTTTTGCCACA
TAAAATACTAAGGAGGCCCTAAACTAAAAATTGCATCGTAGACCAAATTC
ATAGAAATTTCGAATAAAGTTTCTCCAATTGGACTATAGAGTTTCACTGG
ATTGTAAATTTTCGTCTTGTATCATCATAGGATAAGAAGTTGATCAAAGA
AACCTTGATTGTTCCACAGCNTGTTCTGTATCATCATAGGATAAGAAGTT
GATCAAAGAAACCTTGATTGTTCCACAGCCTGGGATTATGGCAAAAAGAC
CTTACGTAAGTTAACTTTTGCAAAAAAAATATTTCTTTTTTTTGAAAATC
AAAACATATCACTACAGGCGGCTTGTATTGTCCTTGTCGTTGATTGATGT
TTGACCCTGCCTTCATTTCGAACAATCTTTTCGACAGAAATTTCCAATCT
TTCCACTTGCATCAACCGCTATTCAACCGACACCTCTGAATTAAGAAATG
ACTTAAAAAATCTTCCCTTTTCAGTTGATGTTAATCGCTTTGAACGAGCC
TTATTCTGGACGAATGGGAGGTTTAGCAAAGATTGATAAAATGTGTTCAA
CACAAGCCAAAGCAGCTGGATATTTCGGATTGAAATTCCACACCTTGATC
TCAGACAACTATAATGATATCGCAAATATGATTCCTTTCCGAAGTCGTAA
AAAACCAGTCGCTAATACCAGGGTATGTACCGGAGATTCCAGTTAACTTT
ACGTTGTGCTGTTTAAGAATCAATGATAATTGTATTATAATATAAGATCT
TCTTTTCTTGATATTTCTATTTCTCCACAAACCGATCTTCTCTCTAATCA
GACAATCTCTTTCAAATGAATTATTATTATTCACCTTAGCTAGTTTTTTT
TCATTCTTGGTTTCGACCTCCAATGTCATTTGAACATCTACCTAGCCTGG
AAGCCGACTTCCTGACCAGGGATATATTCAAATGATTCGAGGTTTAAGAA
CCTTCACGAAGAAGGAAAATACTTACTATCTTACTATCTTCTTACAGGGT
GAGCAGATCTTCCCACGTGCAGAAGATATCTACAAGAGTGATAATTACAC
TGCATTTAATCCAAACATCCCAATCTATTCTTTCGACCAAAAAGATGTTC
GCCGACATGCTTCGTGGTAAGATTAAGATGTTTCTTTTTTGTTAAAAAGA
TACAGAAAATAGGTTCTAATGACAAGATCCCGAAAAAATAGAACAGTCTT
AAAAATCACAAAACTATAGAATCACTTTCCAATCTCGTCCCCGTGTATCC
CAGGCTTTATTTACGTTACTTATGGACGTCATAGAGAATATTTAGCGCCA
TATAGTTGAAGCATAAAAAAGCTGATAATACCAGGGAACGAGGTTGATCA
CGTCCTTCAATCAAAGTGCTGATTGTGGTGATTGACGTGATGAAAGCCTT
TCGCTAGCGCTATCAGACTCTTAGCGAACTAAGAGACTCTACAACCGAGA
ATTAAGTTTGACCTCCCTATCTCTCTCTATTTATGACTTGGCTCCCAAAA
ATATAAAAGCTTCTTTTTCCTTCCAAGACCTTGAATAAGGTGCAATATAG
TCAGTCACCTCATTGAAAAAAATACTAATGTAAAGGAGGTCTTCTCCTCC
TCTCGATAACATTCTGTTATACAATTGATTTTTCACTCAAACTGGACCTC
TCTCGAATTCTAATGAAATGCACTGTATAACACTTCTACTTGAACTTATT
TTGTAGGCCGGTGAAGAAATTTTGGCACGGTTCACACGCTAACGGAAAAC
TCCACTCAACGAAAATGAATTGTCGCAACTGGCGTTCTGAGCAACCTTTC
CATAAGGCAACCGCATCTTCCATTCTTACCTACACTCCTGCATTGAATGA
GTTAGACGTACGCTGCGACCAAAAACTCATCGTCTTGTGCTTACAAGTAA
GATGAGGTCAAGTCCCAGGTTAGATGACATCAATTCTCTATAAAGGGAAT
CTAGTTGGGAATTTCGATGACGAGAAACACCACGGTATGAGAGAAAAGCG
TGGGCGATGAAATTCTATATATACCTACCTGTCTTTAATGTATAAAACGT
GACCTTGAATAAGATAGTGGTAAAAAATTGGGTCTTACACATCACTACAC
TACAAAATGATAATTTATAATAAGCAATATTTTTTAGATAGTTTTATAGC
AGATAGAGCTTTTGTTGAAAATTTTATTCTAAATAATTTTATCATTGTCT
TTGGCCTAATTTTTGGTTAAAAAATTCAGAACCAATCGAGAACTAGTTTG
AGTCCAAAATCGAACATTTTCAGGACCAAAGAGAATCTATGGATTAGACT
TTTTGTTATTTATATTTTATTTTCTCCTTGTGTACATATTTAATTATTTT
TTTCAAAATAAAATAGTTTTTGGAAATAAAAAAATTATTTTCAAAAAAAG
TAAGAAAGAAATTTAGAAATCTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036375	XLOC_036375	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_297	supercontig	scaffold_297:121608..126781 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04624	1.41574	0.283945	0.000249348	3.96604e-09	4.23529e-05	2.7604e-06	2.19406e-08	3.64407	6.15994	3.28663	0.967662	4.12262	4.16293	0.553659	0.620193	2.9428	3.66868	6.02978	4.9768	6.01042	4.64021	3.65352	2.83507	0.00138264	0	19.687	20.3705	3.71099	3.70845

Blast

[Close]

BLAST of TCONS_00057689 vs. Swiss-Prot (Human)
Match: COIA1 (Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5)

HSP 1 Score: 105.916 bits (263), Expect = 1.490e-23
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 3

Query:  711 RPYLMLIALNEPYSGRMGGLAKIDKMCSTQAKAAGYFGLKFHTLISDNYNDIANMIPFRSRKK-PVANTRGEQIFPRAEDIYKSDNYTAFNPNIPIYSFDQKDVRRHASWPVKKFWHGSHANGKLHSTKMNCRNWRSEQPFHKATASSILTYTPALNELDVRCDQKLIVLCLQ 1226
            +P L L+ALN P SG M G+   D  C  QA+A G  G  F   +S    D+ +++    R   P+ N + E +FP  E ++ S +     P   I+SFD KDV RH +WP K  WHGS  NG+   T+  C  WR+E P     ASS+L     L +    C    IVLC++
Sbjct: 1578 QPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAG-TFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALF-SGSEGPLKPGARIFSFDGKDVLRHPTWPQKSVWHGSDPNGR-RLTESYCETWRTEAPSATGQASSLLG-GRLLGQSAASCHHAYIVLCIE 1746

The following BLAST results are available for this feature:

BLAST of TCONS_00057689 vs. Swiss-Prot (Human)

BLAST of TCONS_00057689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COIA1	1.490e-23	36.99	Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=C...	[more]

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TCONS_00057689 (transcript) - C. hemisphaerica