TCONS_00057689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057689
Unique NameTCONS_00057689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057689 ID=TCONS_00057689|Name=TCONS_00057689|organism=Clytia hemisphaerica|type=transcript|length=1754bp
agcttATCAACAGCAAGTTTCTACAATTTGAGGAAGATGCGATGGAATTT
GTTGGAACATTGAAAGGAGCCAAGGGAGAGCAAGGCATTATGGGATTGAA
AGGCGAGGAAGGAAAACAAGGACCTCAAGGAGAACAGgGAATACAAGGTA
TCCAAGGGGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGGTGAACAA
GGAATCGGTGAAGTTGGACCAAAAGGTGAAAAAGGGGACAGTCTGAAAAT
ATCAGAAGTTGCTCAAGAGGTTATTGGTTTGGCAGAAAGAcAAATTCGAA
AATTGAAGGGCGATCAAGGACCTCCAGGTGATCAAGGGCCACGTGGTCTT
CCTGGTGTTTCAGGGCCGCGAGGACCCAAAGGAGAAGCTGGAGTTTCTAC
AGGAAGTAAAGCGAATGTGATATTAACGGATCAAGATTTGGATATAATGG
AAGATATGTTCGGCGTTGGTTCTCTTGCATTTGTTATCAGTACAAATAAT
TTGTTCATCAAATCTCTCAAAGGTTGGATCAGCATCCCCACCGAATCGAA
ATCAGGTCTTCTTGGCAAACTGACCACGGATAGCAACGAGATTGCATCAG
GTCCAACCGTGATCGAATTGACCAAGAAACAAATCACCGAACCCACTGAT
GTTGATAAGAAGTTGATCAAAGAAACCTTGATTGTTCCACAGCCTGGGAT
TATGGCAAAAAGACCTTACTTGATGTTAATCGCTTTGAACGAGCCTTATT
CTGGACGAATGGGAGGTTTAGCAAAGATTGATAAAATGTGTTCAACACAA
GCCAAAGCAGCTGGATATTTCGGATTGAAATTCCACACCTTGATCTCAGA
CAACTATAATGATATCGCAAATATGATTCCTTTCCGAAGTCGTAAAAAAC
CAGTCGCTAATACCAGGGGTGAGCAGATCTTCCCACGTGCAGAAGATATC
TACAAGAGTGATAATTACACTGCATTTAATCCAAACATCCCAATCTATTC
TTTCGACCAAAAAGATGTTCGCCGACATGCTTCGTGGCCggtgaagaaat
tttggcacggTTCACACGCTAACGGAAAACTCCACTCAACGAAAATGAAT
TGTCGCAACTGGCGTTCTGAGCAACCTTTCCATAAGGCAACCGCATCTTC
CATTCTTACCTACACTCCTGCATTGAATGAGTTAGACGTACGCTGCGACC
AAAAACTCATCGTCTTGTGCTTACAAGTAAGATGAGGTCAAGTCCCAGGT
TAGATGACATCAATTCTCTATAAAGGGAATCTAGTTGGGAATTTCGATGA
CGAGAAACACCACGGTATGAGAGAAAAGCGTGGGCGATGAAATTCTATAT
ATACCTACCTGTCTTTAATGTATAAAACGTGACCTTGAATAAGATAGTGG
TAAAAAATTGGGTCTTACACATCACTACACTACAAAATGATAATTTATAA
TAAGCAATATTTTTTAGATAGTTTTATAGCAGATAGagcttttgttgaaa
attttattctaaataatTTTATCATTGTCTTTGGCCtaatttttggttaa
aaaattcagaaCCAATCGAGAACTAGTTTGAGTCCAAAATCGAACATTTT
CAGGACCAAAGAGAATCTATGGATTAGACTTTttgttatttatattttat
tttctccttgtgtacatatttaattatttttttcaaaataaaatagtttt
tggaaataaaaaaattattttcaaaaaaagtaagAAAGAAATTTAGAAAT
CTAG
Run BLAST on NCBI

transcript from alignment at scaffold_297:121608..126781-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057689 ID=TCONS_00057689|Name=TCONS_00057689|organism=Clytia hemisphaerica|type=transcript|length=5174bp|location=Sequence derived from alignment at scaffold_297:121608..126781- (Clytia hemisphaerica)
AGCTTATCAACAGCAAGTTTGTAAGTTCAAAAGATTTTACTGTTCAATTT TATTTTAAATCGTTATTTTGAGTTTAAGATATTGACTAAGTCCCATGTGT ACTTTTTATCAAATCAGCCAAGCTATTGGTTGTTTACCAGGGTAGGCCAT TTTGGGAAAGATTTATGGGAAAAGCTGCATTTGCAAAAAATAAATTAATC AACCCTCTCAAAAGAATATTTTATAGAAACGATTTGATTTTCGAAACATT TATATTTCATTTAGCTACAATTTGAGGAAGATGCGATGGAATTTGTTGGA ACATTGAAAGGAGCCAAGGGAGAGCAAGGCATTATGGGATTGAAAGGCGA GGAAGGAAAACAAGGACCTCAAGGAGAACAGGTAAGTTATATAGAATCTC TGTTTAGTTTGTCTATTATCATTTTTATCAAGAGTTCGCGAATAGAGCCT TTGGTTTGGGTTATAACCACTATAGCCAACTTAGTGAGGTTAACTCTCGC CCAAGTGAAGGTCCGGCAACATTATCACTTTAGAAGTTCAAGAAAGTATT TCTCAAAAAGTTAAAATCGCCCATGGGTGTTTTGGTCGATGCAGGCTACT TTAGATACTTACCACCTACCTGAATCGTTGGGTTTTTCCTTCAATATGTG GATATATATATATTTCTTCATTTTCTTCAGGGAATACAAGGTATCCAAGG GGAAAAAGGTGAAAGAGGTGCTAGAGGAGAAAAGGTAGAGAAATATATCT TACTCGTTTATGACAAAGGAGGATTTGCTTTCAAGCAATTTAANATATTT CTTCATTTTCTTCAGGGAATACAAGGTATCCAAGGAGAAAAAGGTGAAAG AGGTGCTAGAGGAGAAAAGGTAGAGAAATATATCTTACTCGTTTATGACA AAGGAGGATTTGCTTTCAAGCAATTTAAAATCACTAATCTTAATACCACG CATGCAGCTGTCTAGAAGAAGCCATTTCACACGCGATTTCAATTAATATT TAAGGCCTACATAATAATTTGGGCCTTATCTAAAACACTATAATTGTCTT AAAACAAACATCATTTTTCACGTTATTGATTAGCAAACTCCATTTCCTGA TTAGGGTGAACAAGGAATCGGTGAAGTTGGACCAAAAGGTGAAAAAGGGG ACAGTCTGAAAATATCAGAAGTTGCTCAAGAGGTTATTGGTTTGGCAGAA AGACGTAAGTTTATTTTTCTCCAATACTTAGAGGGGTTCTGATAAATTCC GATGGTGGATTGGCGGATTGGCGGCCGCCCACGCTAAAGCTCTAAAAGGA GCGGGCCAATTTCCCATCGGAGAGGAATGATAGTCGGCCTTTGATGTACT GCATTCCCAGTCAGGTTCAGCCACCCTTGTGCGTAAGGCTGAAAATATTT AGGTTAGACCCGTTAATCCCCGAAAACATCGGCTGGGGTCGAAGACTCCC GCTGCAAAATCCCTGACGCAGTCTTGCAAAATTCCGTAATCCAAACCTTC CACATATTGAAAATTTCCCGACCTTCAGAGTTTTAGCGAGTGCAGATTCC CAGCTAGCACACAACGTTATTTCAATGTTTTTCCGTATAACGTTAGACGG ATGTTGAGACAACGTTGCGTGCCTGCAGGTTTTCCCTTCCCACTACCTTC CTCCTGAACAGATTAACTTACTAGCTTGTAATTGAGGTTTTTGTATTTAT CACAGAAATTCGAAAATTGAAGGGCGATCAAGGACCTCCAGGTGATCAAG GGCCACGTGGTCTTCCTGGTGTTTCAGGGCCGCGAGGACCCAAAGGAGAA GCTGGAGTTTCTACAGGAAGTAAAGTAAGTAGAAATATGTCATCAAAAAT ATACTTTCTAAATAAAATATTCGCTTCCCGTTGTATTGAAAACTATTTTC AAAATTGCTCCCGATAACGTCGTTATAATTTGTAAATGGCTATTAGAGCT TTTTATCCGATAAGCGATGTCGGATATATCCTCTTAATCGATGCATCTAG GTAGACAGAACGATACCCAAATTCGTTAAAACGCTGATTTCAGAAGCACT ATCAAAGTTTTTCCCAACTCCTATTCTTTTTAATATAATTACAATGACAA ATTGTTGTTTTCTGTAGGCGAATGTGATATTAACGGATCAAGATTTGGAT ATAATGGAAGATATGTTCGGCGTTGGTTCTCTTGCATTTGTTATCAGTAC AAATAATTTGTTCATCAAATCTCTCAAAGGTTGGATCAGCATCCCCGTAA GTTCTTTGGTTTTGATTGAGATATATTCATTCTCACCAGTTTTTTGTGAG ACTTATCTCATTTATTTTATCCCAAGTCTGCCCTTTAGATTCTTATACAC TTTATACAAGCTTGAATATTTCCATAATACCTGTGAGCCATGTAAGCCAT GCATTTTTTGAGATCTAAACCCTCAAATATCTTTTTCAACCTTAAGTAAA TGTAAAACTTAAAACTTTACTTGTAATTTTATCCCATTTCTATCACCATA GACCGAATCGAAATCAGGTCTTCTTGGCAAACTGACCACGGATAGCAACG AGATTGCATCAGGTCCAACCGTGATCGAATTGACCAAGAAACAAATCACC GAACCCACTGATGTTGTAAGTGGTGGCTCTTCTTTCCTTGGCAATTTCTT TTGCTACTTTTATTCGTATTGAGTCACGACAGTAGAAATCAATCAATCAA TTGTAAACATGATTCAAAGAAATCGATTTTTTAATTAAAGTTTTGCCACA TAAAATACTAAGGAGGCCCTAAACTAAAAATTGCATCGTAGACCAAATTC ATAGAAATTTCGAATAAAGTTTCTCCAATTGGACTATAGAGTTTCACTGG ATTGTAAATTTTCGTCTTGTATCATCATAGGATAAGAAGTTGATCAAAGA AACCTTGATTGTTCCACAGCNTGTTCTGTATCATCATAGGATAAGAAGTT GATCAAAGAAACCTTGATTGTTCCACAGCCTGGGATTATGGCAAAAAGAC CTTACGTAAGTTAACTTTTGCAAAAAAAATATTTCTTTTTTTTGAAAATC AAAACATATCACTACAGGCGGCTTGTATTGTCCTTGTCGTTGATTGATGT TTGACCCTGCCTTCATTTCGAACAATCTTTTCGACAGAAATTTCCAATCT TTCCACTTGCATCAACCGCTATTCAACCGACACCTCTGAATTAAGAAATG ACTTAAAAAATCTTCCCTTTTCAGTTGATGTTAATCGCTTTGAACGAGCC TTATTCTGGACGAATGGGAGGTTTAGCAAAGATTGATAAAATGTGTTCAA CACAAGCCAAAGCAGCTGGATATTTCGGATTGAAATTCCACACCTTGATC TCAGACAACTATAATGATATCGCAAATATGATTCCTTTCCGAAGTCGTAA AAAACCAGTCGCTAATACCAGGGTATGTACCGGAGATTCCAGTTAACTTT ACGTTGTGCTGTTTAAGAATCAATGATAATTGTATTATAATATAAGATCT TCTTTTCTTGATATTTCTATTTCTCCACAAACCGATCTTCTCTCTAATCA GACAATCTCTTTCAAATGAATTATTATTATTCACCTTAGCTAGTTTTTTT TCATTCTTGGTTTCGACCTCCAATGTCATTTGAACATCTACCTAGCCTGG AAGCCGACTTCCTGACCAGGGATATATTCAAATGATTCGAGGTTTAAGAA CCTTCACGAAGAAGGAAAATACTTACTATCTTACTATCTTCTTACAGGGT GAGCAGATCTTCCCACGTGCAGAAGATATCTACAAGAGTGATAATTACAC TGCATTTAATCCAAACATCCCAATCTATTCTTTCGACCAAAAAGATGTTC GCCGACATGCTTCGTGGTAAGATTAAGATGTTTCTTTTTTGTTAAAAAGA TACAGAAAATAGGTTCTAATGACAAGATCCCGAAAAAATAGAACAGTCTT AAAAATCACAAAACTATAGAATCACTTTCCAATCTCGTCCCCGTGTATCC CAGGCTTTATTTACGTTACTTATGGACGTCATAGAGAATATTTAGCGCCA TATAGTTGAAGCATAAAAAAGCTGATAATACCAGGGAACGAGGTTGATCA CGTCCTTCAATCAAAGTGCTGATTGTGGTGATTGACGTGATGAAAGCCTT TCGCTAGCGCTATCAGACTCTTAGCGAACTAAGAGACTCTACAACCGAGA ATTAAGTTTGACCTCCCTATCTCTCTCTATTTATGACTTGGCTCCCAAAA ATATAAAAGCTTCTTTTTCCTTCCAAGACCTTGAATAAGGTGCAATATAG TCAGTCACCTCATTGAAAAAAATACTAATGTAAAGGAGGTCTTCTCCTCC TCTCGATAACATTCTGTTATACAATTGATTTTTCACTCAAACTGGACCTC TCTCGAATTCTAATGAAATGCACTGTATAACACTTCTACTTGAACTTATT TTGTAGGCCGGTGAAGAAATTTTGGCACGGTTCACACGCTAACGGAAAAC TCCACTCAACGAAAATGAATTGTCGCAACTGGCGTTCTGAGCAACCTTTC CATAAGGCAACCGCATCTTCCATTCTTACCTACACTCCTGCATTGAATGA GTTAGACGTACGCTGCGACCAAAAACTCATCGTCTTGTGCTTACAAGTAA GATGAGGTCAAGTCCCAGGTTAGATGACATCAATTCTCTATAAAGGGAAT CTAGTTGGGAATTTCGATGACGAGAAACACCACGGTATGAGAGAAAAGCG TGGGCGATGAAATTCTATATATACCTACCTGTCTTTAATGTATAAAACGT GACCTTGAATAAGATAGTGGTAAAAAATTGGGTCTTACACATCACTACAC TACAAAATGATAATTTATAATAAGCAATATTTTTTAGATAGTTTTATAGC AGATAGAGCTTTTGTTGAAAATTTTATTCTAAATAATTTTATCATTGTCT TTGGCCTAATTTTTGGTTAAAAAATTCAGAACCAATCGAGAACTAGTTTG AGTCCAAAATCGAACATTTTCAGGACCAAAGAGAATCTATGGATTAGACT TTTTGTTATTTATATTTTATTTTCTCCTTGTGTACATATTTAATTATTTT TTTCAAAATAAAATAGTTTTTGGAAATAAAAAAATTATTTTCAAAAAAAG TAAGAAAGAAATTTAGAAATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036375XLOC_036375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057689-exon-scaffold_297-1575043694:126762..126781TCONS_00057689-exon-scaffold_297-1575043694:126762..126781Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:126401..126517TCONS_00057689-exon-scaffold_297-1575043694:126401..126517Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:126048..126101TCONS_00057689-exon-scaffold_297-1575043694:126048..126101Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:125578..125677TCONS_00057689-exon-scaffold_297-1575043694:125578..125677Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:124958..125076TCONS_00057689-exon-scaffold_297-1575043694:124958..125076Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:124536..124664TCONS_00057689-exon-scaffold_297-1575043694:124536..124664Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:124167..124280TCONS_00057689-exon-scaffold_297-1575043694:124167..124280Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:123879..123901TCONS_00057689-exon-scaffold_297-1575043694:123879..123901Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:123777..123819TCONS_00057689-exon-scaffold_297-1575043694:123777..123819Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:123360..123557TCONS_00057689-exon-scaffold_297-1575043694:123360..123557Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:122916..123034TCONS_00057689-exon-scaffold_297-1575043694:122916..123034Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1575043694:121608..122325TCONS_00057689-exon-scaffold_297-1575043694:121608..122325Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:126762..126781TCONS_00057689-exon-scaffold_297-1510915933:126762..126781Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:126401..126517TCONS_00057689-exon-scaffold_297-1510915933:126401..126517Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:126048..126101TCONS_00057689-exon-scaffold_297-1510915933:126048..126101Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:125578..125677TCONS_00057689-exon-scaffold_297-1510915933:125578..125677Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:124958..125076TCONS_00057689-exon-scaffold_297-1510915933:124958..125076Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:124536..124664TCONS_00057689-exon-scaffold_297-1510915933:124536..124664Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:124167..124280TCONS_00057689-exon-scaffold_297-1510915933:124167..124280Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:123879..123901TCONS_00057689-exon-scaffold_297-1510915933:123879..123901Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:123777..123819TCONS_00057689-exon-scaffold_297-1510915933:123777..123819Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:123360..123557TCONS_00057689-exon-scaffold_297-1510915933:123360..123557Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:122916..123034TCONS_00057689-exon-scaffold_297-1510915933:122916..123034Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1510915933:121608..122325TCONS_00057689-exon-scaffold_297-1510915933:121608..122325Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:126762..126781TCONS_00057689-exon-scaffold_297-1491911889:126762..126781Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:126401..126517TCONS_00057689-exon-scaffold_297-1491911889:126401..126517Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:126048..126101TCONS_00057689-exon-scaffold_297-1491911889:126048..126101Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:125578..125677TCONS_00057689-exon-scaffold_297-1491911889:125578..125677Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:124958..125076TCONS_00057689-exon-scaffold_297-1491911889:124958..125076Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:124536..124664TCONS_00057689-exon-scaffold_297-1491911889:124536..124664Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:124167..124280TCONS_00057689-exon-scaffold_297-1491911889:124167..124280Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:123879..123901TCONS_00057689-exon-scaffold_297-1491911889:123879..123901Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:123777..123819TCONS_00057689-exon-scaffold_297-1491911889:123777..123819Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:123360..123557TCONS_00057689-exon-scaffold_297-1491911889:123360..123557Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:122916..123034TCONS_00057689-exon-scaffold_297-1491911889:122916..123034Clytia hemisphaericaexon
TCONS_00057689-exon-scaffold_297-1491911889:121608..122325TCONS_00057689-exon-scaffold_297-1491911889:121608..122325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:121608..126781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (20.3705 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04624 1.41574 0.283945 0.000249348 3.96604e-09 4.23529e-05 2.7604e-06 2.19406e-08 3.64407 6.15994 3.28663 0.967662 4.12262 4.16293 0.553659 0.620193 2.9428 3.66868 6.02978 4.9768 6.01042 4.64021 3.65352 2.83507 0.00138264 0 19.687 20.3705 3.71099 3.70845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600Expect = 1.49e-23 / Id = 36.99SequenceCOIA1
Match NameE-valueIdentityDescription
COIA11.490e-2336.99Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=C... [more]
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