TCONS_00057716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057716
Unique NameTCONS_00057716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057716 ID=TCONS_00057716|Name=TCONS_00057716|organism=Clytia hemisphaerica|type=transcript|length=544bp
agagctgcgagcggagctgtgtagtttatttgctttgaaatttttctgct
ttcattggtcagtcatttgatggttATGCAAGtctccctccactgatgca
agttaccagacTTAACGCCGACGACGTGGTACATGATGACGCGTCACAAC
ACAGTATATACTATCTGGAATTATCTGAATGAAAAATAGAGCAATCAATA
TTTTGAACAATACCTGTATGATGCCTGTAATGAACTTTGAAGCTGTATGC
TGATACAAATCCCTTTTCACAGCCTTCATAATCACAATAAAAACTGAATT
CGCCAGAATGTATTTTCATGTGCGTTTTGAGATTCCCCTTCGTTTTGTAT
GTACGATTACAGCCATCAATAGTACAGGAGAAAGCTTTGCTTTCAGCACT
CATCTTTTAGAACCAGTTACACGCCAAAAAATACTggatttttacataaa
aaagaGGGTGAAGAAAAAATTGGACAACCACTGTGAAGCAGATCCCAGTA
AAATGATGTTTTGTTATGATTTAGGCCTTCCCCTTACCTGAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_297:239838..240381

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057716 ID=TCONS_00057716|Name=TCONS_00057716|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at scaffold_297:239838..240381 (Clytia hemisphaerica)
TTCTCAGGTAAGGGGAAGGCCTAAATCATAACAAAACATCATTTTACTGG
GATCTGCTTCACAGTGGTTGTCCAATTTTTTCTTCACCCtcttttttatg
taaaaatccAGTATTTTTTGGCGTGTAACTGGTTCTAAAAGATGAGTGCT
GAAAGCAAAGCTTTCTCCTGTACTATTGATGGCTGTAATCGTACATACAA
AACGAAGGGGAATCTCAAAACGCACATGAAAATACATTCTGGCGAATTCA
GTTTTTATTGTGATTATGAAGGCTGTGAAAAGGGATTTGTATCAGCATAC
AGCTTCAAAGTTCATTACAGGCATCATACAGGTATTGTTCAAAATATTGA
TTGCTCTATTTTTCATTCAGATAATTCCAGATAGTATATACTGTGTTGTG
ACGCGTCATCATGTACCACGTCGTCGGCGTTAAgtctggtaacttgcatc
agtggagggagaCTTGCATaaccatcaaatgactgaccaatgaaagcaga
aaaatttcaaagcaaataaactacacagctccgctcgcagctct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036397XLOC_036397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057716-exon-scaffold_297-1491911889:239838..240381TCONS_00057716-exon-scaffold_297-1491911889:239838..240381Clytia hemisphaericaexon
TCONS_00057716-exon-scaffold_297-1510915933:239838..240381TCONS_00057716-exon-scaffold_297-1510915933:239838..240381Clytia hemisphaericaexon
TCONS_00057716-exon-scaffold_297-1575043694:239838..240381TCONS_00057716-exon-scaffold_297-1575043694:239838..240381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:239838..240381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2243	11.1491	2.76083	2.93995	4.77192	2.79841	2.76418	2.85146	2.10221	2.84849	3.8008	2.66025	6.01813	6.91646	3.99227	4.57807	2.17604	3.20258	3.97784	2.96674	2.58112	2.88691	12.1007	7.00319	5.56439	5.4189	3.55543	3.06581	7.42695	9.02311
Blast
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BLAST of TCONS_00057716 vs. Swiss-Prot (Human)
Match: MTF1 (Metal regulatory transcription factor 1 OS=Homo sapiens GN=MTF1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.953e-18
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = -1 
Query:  215 ESKAFSCTIDGCNRTYKTKGNLKTHMKIHSGEFSFYCDYEGCEKGFVSAYSFKVHYRHHT 394
            E K + CT +GC RTY T GNL+TH K H GE++F C+ EGC K F+++YS ++H R HT
Sbjct:  136 EVKRYQCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKAFLTSYSLRIHVRVHT 195
The following BLAST results are available for this feature:
BLAST of TCONS_00057716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTF17.953e-1853.33Metal regulatory transcription factor 1 OS=Homo sa... [more]
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