Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057735 ID=TCONS_00057735|Name=TCONS_00057735|organism=Clytia hemisphaerica|type=transcript|length=1951bpRun BLAST on NCBI transcript from alignment at scaffold_298:82998..84948+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057735 ID=TCONS_00057735|Name=TCONS_00057735|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at scaffold_298:82998..84948+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00057735 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3) HSP 1 Score: 244.202 bits (622), Expect = 1.212e-69 Identity = 151/411 (36.74%), Postives = 211/411 (51.34%), Query Frame = 3 Query: 294 DLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKLKVTESDSPCMDDLPDQTHENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1523 +L HR+ +H K +KC ECGK FT+R L +H+ IH +KP++C ECG+ F H +YL H+R G K ++C +CGK+F +L ++ H K F C ECGK + L H R+H +P+ C+ECGK+F+++ L HQ +H G KP++C ECG+ F YN YL RH H G KP+KC++C F +L +H ++H KPF C +CS F+ ++ L H IH KP+KC+ C K FS + L HQ +H G K Y C +CG S+ KS+L+ H +H KP KC+EC +++ L H VH K +K CG FS S L HQ IH G K + C+ CG F L H Sbjct: 271 NLTSHRR-IHSGEKPYKCSECGKTFTVRSNLTIHQ-VIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGE-------------------KPYKCNECGKAFRGHSNLTTHQLI--------------HTGEKPFKCNECGKLFTQNSHLISHW-RIHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATH-QVIHTGTKPFKCNECSKVFTQNSQLANH-RRIHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSHRG-IHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATH 639 HSP 2 Score: 234.187 bits (596), Expect = 4.391e-66 Identity = 152/437 (34.78%), Postives = 209/437 (47.83%), Query Frame = 3 Query: 297 LIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKLKVTESDSPCMDDLPDQTHENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINI---------------------------VHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1523 L HR+ +H K +KC ECGK F L H+ IH +KPF+C ECG+ FT ++L H R G K ++C +CGK+F+ + SL + H K + C ECGK L +H RVH +P+ C+ECGK+F+M L HQ V+H G KPF+C EC + FT N L H H G KP+KC++C F + SLT+H I +H KP+ C +C F+ ++ L RH +H KP+KC+ C + FS + L HQ +H G K Y C +CG + H SYL H +H KP KC+EC +S +L H +H K +K CG F+Q+S L HQ+ H G K + CN CG +FS + SL H Sbjct: 328 LATHRR-IHTGEKPYKCNECGKAFRGHSNLTTHQ-LIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGE-------------------KPYKCNECGKAFSVRSSLA--------------IHQTIHTGEKPYKCNECGKVFRYNSYLGRH-RRVHTGEKPYKCNECGKAFSMHSNLATHQ-VIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVFRHNSYLATHRR-IHTGEKPYKCNECGKAFSMHSNLTTH-KVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTH 723 HSP 3 Score: 219.935 bits (559), Expect = 4.262e-61 Identity = 151/460 (32.83%), Postives = 214/460 (46.52%), Query Frame = 3 Query: 297 LIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKLKVTESDS------PCMDDLPDQT--------HENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINI---------------------------VHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH--METCE*P 1544 LI H + +H K +KC ECGK F++R L +H+ IH +KP++C ECG+ F + +YL H+R G K ++C +CGK+F+ +L +V + + C + H K + C ECGK S + L H +H +P+ C ECGKSFT + L+ H+ + H G KP++C ECG+ F L RH H G KP+KC+ C F + SLT H I +H KP+ C +C FSM + L H IH KP+KC+ C K F++ HL HQ T H G K Y C++CG ++ +S L H +H KP KC+EC +++ L H +H K ++ CG F S L H IH G K + CN CG F + +L H M T E P Sbjct: 384 LISHWR-IHTGEKPYKCNECGKAFSVRSSLAIHQT-IHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGE-------------------KPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTH-QAIHSGEKPYKCIECGKSFTQKSHLRSHRGI-HSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTH-KVIHTGEKPYKCNQCGKVFTQNSHLANHQRT-HTGEKPYRCNECGKAFSVRSSLTTH-QAIHTGKKPYKCNECGKVFTQNAHLANH-RRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKP 816 HSP 4 Score: 188.734 bits (478), Expect = 1.073e-50 Identity = 120/351 (34.19%), Postives = 177/351 (50.43%), Query Frame = 3 Query: 294 DLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMK-LKVTESDSP-----CMDDLPDQT--------HENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLK 1304 L HR+ +H K +KC ECGK F++R L H+ IH+ +KP++C ECG++FT K++L H R +H K ++C +CGK FA L + +V + P C D++ H K + C ECGK L H R+H +P+ C+ECGK+F+M L H+ V+H G KP++C +CG+ FT N +L H H G KP++C++C F + SLT+H +H KP+ C +C F+ +A L H IH KP++C C K F + L H +H G K+Y C++CG + S L H +H KP K Sbjct: 495 QLANHRR-IHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSH-RGIHSGE------------------KPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATH-RRIHTGEKPYKCNECGKAFSMHSNLTTHK-VIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTH-QAIHTGKKPYKCNECGKVFTQNAHLANH-RRIHTGEKPYRCTECGKAFRVRSSLTTHM-AIHTGEKRYKCNECGKVFRQSSNLASH-HRMHTGEKPYK 818 HSP 5 Score: 173.711 bits (439), Expect = 1.295e-45 Identity = 103/278 (37.05%), Postives = 145/278 (52.16%), Query Frame = 3 Query: 774 RPHMCDECGKSFTMQYELKKHQ---------------------------DVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1523 +P+ C+ECGK+FT L H+ V+H G KP++C ECG+ F +N YL H H G KP+KC++C F +LT+H ++H KPF C +C F+ ++ L H IH KP+KC+ C K FS + L +HQ T+H G K Y C++CG + + SYL +H VH KP KC+EC +S +L H +H K FK C F+Q+S L H++IH G K + CN CG +FS + SL H Sbjct: 255 KPYKCNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTH-QLIHTGEKPFKCNECGKLFTQNSHLISHWR-IHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRR-VHTGEKPYKCNECGKAFSMHSNLATH-QVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTH 527 The following BLAST results are available for this feature:
BLAST of TCONS_00057735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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