TCONS_00057735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057735
Unique NameTCONS_00057735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1951

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057735 ID=TCONS_00057735|Name=TCONS_00057735|organism=Clytia hemisphaerica|type=transcript|length=1951bp
TTCAGAGATAACGCAACTAAATAATAATGAGTGatataattgaaataaaa
atagaagAAGATGTAATTGAAACTGAAGGAAATGAGTTTCCACAAACATT
ATCATTGACTTTGAAGGAAGGAATTGTTGTTTGTGATAGAGTACCAAGTA
TTCCAATGGTTAAAATCGAATGCAATGATGGAGCAGAATCAAACGAAAAA
ACACCAGGGTTGAAGTATGGAGAACAGTCTAAAACTGACGCGTTCAAGAA
GTTTAAGTGTTCCAAATGTTTTATAAGTCTTAAACGTAAAAGAGATTTAA
TAAAACATCGTCAAATGGTCCACGGTAgaattaaactttttaaatgtaaa
gaatgtggtaaatgttttacATTGAGAGTTAAACTTAATGTACATCGAAA
TCGTATCCACAATCAAAAGAAACCATTCAGGTGTCAGGAATGTGGTGAAA
CTTTTACACACAAAACTTACCTTGAGGAACACAAACGATCCTTACATGGA
GCTGCAAACCATATAACTACCAAGAAAACTGCATTGTCCATTGAAAAGAA
GATTAAACATAAACATTTTGAATGTCAaaagtgtggtaaatcttttgctT
GTAAGAGATCATTAATGAAACTGAAAGTCACTGAAAGTGACTCGCCATGT
ATGGACGATCTTCCTGATCAAACTCACGAGAACTTAAAAGCTTTTATATG
TAAGGAATGTGGTAAGACATTGTCATCAAAAAAGGAGCTGAAAAAACACG
TTGACAGAGTGCATAGGAAGATAAGACCACACATGTGCGATGAATGTGGT
AAAAGTTTTACCATGCAATATGAACTTAAAAAACACCAGGATGTTGTTCA
TAAAGGTATAAAGCCGTttgaatgtcaagaatgtggtgaACGTTTTACAT
ATAACAAATATCTTCAAAGGCACTCCATGAAACATAAAGGAATTAAACCC
TTTAAATGCGACCAGTGTTCTGCGAAATTCATAACAAAGTATTCCCTTAC
CTCTCATATCAATATCGTTCACAAAAAACTGAAACCTTTCCATTGTACTC
AGTGTAGTATGAAGTTTTCTATGAGTGCAGGATTGAAACGTCATATCAAC
GCAATACACAAGAACCTTAAACCATTCAAATGTGATGTTTGTGATAAAGA
TTTTTCACGCAAAGACCATCTTCAATTACACCAAGACACTGTTCATAAAG
GACTTAAAAAATATTCCTGTGATCAGTGTGGTGTTAGTTATGGACACAAA
TCTTATCTTAAACAACATATAGACTTTGTCCATAAAAAATTAAAGCCACT
TAAATGCCATGAATGCGACACTAAATATAGTAGAAAGAGAGATCTCGATG
CTCATATCAATACAGTACACAAGAAGATCAAATcttttaagtttgaaatt
tgtgGAGACCGTTTCAGCCAAAGTAGTTGTCTCTACAGACACCAACAAAT
TCATGAAGGGACAAAATTCTCATGCAATGTTTGTGGTAATTCCTTTTCAA
GGAAAGATAGTCTGAAGAAACACATGGAAACTTGCGAGTAGCCATCAGCC
ATCAGCCATTAAAACGTGAGGAAACTGGGTTCGAGATTGCCAGGAAGGAA
TGACGTCAAAGTTGTTGCATTGACATCCTTATAGACAAAGAACGTGACGT
CATatccttgtaaattcattaccaaACCCCTTTAAAGTTGACGATGTCGC
TAAGGGCTGATTAATAGGTGTGTTCAAGGTTacaattctcatttttttta
ttcacttGTCTATTCTGTTTTCttaggattttcaaaaaatttcatttcta
tttcattcctttttaaataagaaaacaaATGTCGATACAGTGCTCCATAC
GGAAGTATTTTTAAAtacaaattcaattcaattcacaTAATGTTTTTTTG
TCTCATATTGCTGTTCTTATTTCTTCAATATCCAATTGGCTTTGAGATCT
G
Run BLAST on NCBI

transcript from alignment at scaffold_298:82998..84948+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057735 ID=TCONS_00057735|Name=TCONS_00057735|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at scaffold_298:82998..84948+ (Clytia hemisphaerica)
TTCAGAGATAACGCAACTAAATAATAATGAGTGatataattgaaataaaa atagaagAAGATGTAATTGAAACTGAAGGAAATGAGTTTCCACAAACATT ATCATTGACTTTGAAGGAAGGAATTGTTGTTTGTGATAGAGTACCAAGTA TTCCAATGGTTAAAATCGAATGCAATGATGGAGCAGAATCAAACGAAAAA ACACCAGGGTTGAAGTATGGAGAACAGTCTAAAACTGACGCGTTCAAGAA GTTTAAGTGTTCCAAATGTTTTATAAGTCTTAAACGTAAAAGAGATTTAA TAAAACATCGTCAAATGGTCCACGGTAgaattaaactttttaaatgtaaa gaatgtggtaaatgttttacATTGAGAGTTAAACTTAATGTACATCGAAA TCGTATCCACAATCAAAAGAAACCATTCAGGTGTCAGGAATGTGGTGAAA CTTTTACACACAAAACTTACCTTGAGGAACACAAACGATCCTTACATGGA GCTGCAAACCATATAACTACCAAGAAAACTGCATTGTCCATTGAAAAGAA GATTAAACATAAACATTTTGAATGTCAaaagtgtggtaaatcttttgctT GTAAGAGATCATTAATGAAACTGAAAGTCACTGAAAGTGACTCGCCATGT ATGGACGATCTTCCTGATCAAACTCACGAGAACTTAAAAGCTTTTATATG TAAGGAATGTGGTAAGACATTGTCATCAAAAAAGGAGCTGAAAAAACACG TTGACAGAGTGCATAGGAAGATAAGACCACACATGTGCGATGAATGTGGT AAAAGTTTTACCATGCAATATGAACTTAAAAAACACCAGGATGTTGTTCA TAAAGGTATAAAGCCGTttgaatgtcaagaatgtggtgaACGTTTTACAT ATAACAAATATCTTCAAAGGCACTCCATGAAACATAAAGGAATTAAACCC TTTAAATGCGACCAGTGTTCTGCGAAATTCATAACAAAGTATTCCCTTAC CTCTCATATCAATATCGTTCACAAAAAACTGAAACCTTTCCATTGTACTC AGTGTAGTATGAAGTTTTCTATGAGTGCAGGATTGAAACGTCATATCAAC GCAATACACAAGAACCTTAAACCATTCAAATGTGATGTTTGTGATAAAGA TTTTTCACGCAAAGACCATCTTCAATTACACCAAGACACTGTTCATAAAG GACTTAAAAAATATTCCTGTGATCAGTGTGGTGTTAGTTATGGACACAAA TCTTATCTTAAACAACATATAGACTTTGTCCATAAAAAATTAAAGCCACT TAAATGCCATGAATGCGACACTAAATATAGTAGAAAGAGAGATCTCGATG CTCATATCAATACAGTACACAAGAAGATCAAATcttttaagtttgaaatt tgtgGAGACCGTTTCAGCCAAAGTAGTTGTCTCTACAGACACCAACAAAT TCATGAAGGGACAAAATTCTCATGCAATGTTTGTGGTAATTCCTTTTCAA GGAAAGATAGTCTGAAGAAACACATGGAAACTTGCGAGTAGCCATCAGCC ATCAGCCATTAAAACGTGAGGAAACTGGGTTCGAGATTGCCAGGAAGGAA TGACGTCAAAGTTGTTGCATTGACATCCTTATAGACAAAGAACGTGACGT CATatccttgtaaattcattaccaaACCCCTTTAAAGTTGACGATGTCGC TAAGGGCTGATTAATAGGTGTGTTCAAGGTTacaattctcatttttttta ttcacttGTCTATTCTGTTTTCttaggattttcaaaaaatttcatttcta tttcattcctttttaaataagaaaacaaATGTCGATACAGTGCTCCATAC GGAAGTATTTTTAAAtacaaattcaattcaattcacaTAATGTTTTTTTG TCTCATATTGCTGTTCTTATTTCTTCAATATCCAATTGGCTTTGAGATCT G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036399XLOC_036399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057735-exon-scaffold_298-1491911889:82998..84948TCONS_00057735-exon-scaffold_298-1491911889:82998..84948Clytia hemisphaericaexon
TCONS_00057735-exon-scaffold_298-1510915933:82998..84948TCONS_00057735-exon-scaffold_298-1510915933:82998..84948Clytia hemisphaericaexon
TCONS_00057735-exon-scaffold_298-1575043694:82998..84948TCONS_00057735-exon-scaffold_298-1575043694:82998..84948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:82998..84948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.4473 11.2976 6.09058 3.85052 0.919606 0.34745 1.16475 0.988314 1.03373 0.509786 1.36431 1.16651 0.711511 0.529356 0.379085 0.579909 1.11889 1.21191 0.280043 0.528623 0.664956 0.586548 10.1618 9.921 2.17745 4.07702 1.35934 1.64931 6.04931 7.57577
Blast
BLAST of TCONS_00057735 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 1.212e-69
Identity = 151/411 (36.74%), Postives = 211/411 (51.34%), Query Frame = 3
Query:  294 DLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKLKVTESDSPCMDDLPDQTHENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1523
            +L  HR+ +H   K +KC ECGK FT+R  L +H+  IH  +KP++C ECG+ F H +YL  H+R   G                    K ++C +CGK+F    +L   ++               H   K F C ECGK  +    L  H  R+H   +P+ C+ECGK+F+++  L  HQ  +H G KP++C ECG+ F YN YL RH   H G KP+KC++C   F    +L +H  ++H   KPF C +CS  F+ ++ L  H   IH   KP+KC+ C K FS +  L  HQ  +H G K Y C +CG S+  KS+L+ H   +H   KP KC+EC   +++   L  H   VH   K +K   CG  FS  S L  HQ IH G K + C+ CG  F     L  H
Sbjct:  271 NLTSHRR-IHSGEKPYKCSECGKTFTVRSNLTIHQ-VIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGE-------------------KPYKCNECGKAFRGHSNLTTHQLI--------------HTGEKPFKCNECGKLFTQNSHLISHW-RIHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATH-QVIHTGTKPFKCNECSKVFTQNSQLANH-RRIHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSHRG-IHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATH 639          

HSP 2 Score: 234.187 bits (596), Expect = 4.391e-66
Identity = 152/437 (34.78%), Postives = 209/437 (47.83%), Query Frame = 3
Query:  297 LIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKLKVTESDSPCMDDLPDQTHENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINI---------------------------VHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1523
            L  HR+ +H   K +KC ECGK F     L  H+  IH  +KPF+C ECG+ FT  ++L  H R   G                    K ++C +CGK+F+ + SL               +    H   K + C ECGK       L +H  RVH   +P+ C+ECGK+F+M   L  HQ V+H G KPF+C EC + FT N  L  H   H G KP+KC++C   F  + SLT+H  I                           +H   KP+ C +C   F+ ++ L RH   +H   KP+KC+ C + FS +  L  HQ  +H G K Y C +CG  + H SYL  H   +H   KP KC+EC   +S   +L  H   +H   K +K   CG  F+Q+S L  HQ+ H G K + CN CG +FS + SL  H
Sbjct:  328 LATHRR-IHTGEKPYKCNECGKAFRGHSNLTTHQ-LIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGE-------------------KPYKCNECGKAFSVRSSLA--------------IHQTIHTGEKPYKCNECGKVFRYNSYLGRH-RRVHTGEKPYKCNECGKAFSMHSNLATHQ-VIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWR-VHTGEKPYKCNDCGRAFSDRSSLTFHQ-AIHTGEKPYKCHECGKVFRHNSYLATHRR-IHTGEKPYKCNECGKAFSMHSNLTTH-KVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTH 723          

HSP 3 Score: 219.935 bits (559), Expect = 4.262e-61
Identity = 151/460 (32.83%), Postives = 214/460 (46.52%), Query Frame = 3
Query:  297 LIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMKLKVTESDS------PCMDDLPDQT--------HENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINI---------------------------VHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH--METCE*P 1544
            LI H + +H   K +KC ECGK F++R  L +H+  IH  +KP++C ECG+ F + +YL  H+R   G                    K ++C +CGK+F+   +L   +V  + +       C       +        H   K + C ECGK  S +  L  H   +H   +P+ C ECGKSFT +  L+ H+ + H G KP++C ECG+ F     L RH   H G KP+KC+ C   F  + SLT H  I                           +H   KP+ C +C   FSM + L  H   IH   KP+KC+ C K F++  HL  HQ T H G K Y C++CG ++  +S L  H   +H   KP KC+EC   +++   L  H   +H   K ++   CG  F   S L  H  IH G K + CN CG  F +  +L  H  M T E P
Sbjct:  384 LISHWR-IHTGEKPYKCNECGKAFSVRSSLAIHQT-IHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGE-------------------KPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTH-QAIHSGEKPYKCIECGKSFTQKSHLRSHRGI-HSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTH-KVIHTGEKPYKCNQCGKVFTQNSHLANHQRT-HTGEKPYRCNECGKAFSVRSSLTTH-QAIHTGKKPYKCNECGKVFTQNAHLANH-RRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGEKP 816          

HSP 4 Score: 188.734 bits (478), Expect = 1.073e-50
Identity = 120/351 (34.19%), Postives = 177/351 (50.43%), Query Frame = 3
Query:  294 DLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRIHNQKKPFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKTALSIEKKIKHKHFECQKCGKSFACKRSLMK-LKVTESDSP-----CMDDLPDQT--------HENLKAFICKECGKTLSSKKELKKHVDRVHRKIRPHMCDECGKSFTMQYELKKHQDVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLK 1304
             L  HR+ +H   K +KC ECGK F++R  L  H+  IH+ +KP++C ECG++FT K++L  H R +H                     K ++C +CGK FA    L +  +V   + P     C     D++        H   K + C ECGK       L  H  R+H   +P+ C+ECGK+F+M   L  H+ V+H G KP++C +CG+ FT N +L  H   H G KP++C++C   F  + SLT+H   +H   KP+ C +C   F+ +A L  H   IH   KP++C  C K F  +  L  H   +H G K+Y C++CG  +   S L  H   +H   KP K
Sbjct:  495 QLANHRR-IHTGEKPYKCNECGKAFSVRSSLTTHQ-AIHSGEKPYKCIECGKSFTQKSHLRSH-RGIHSGE------------------KPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATH-RRIHTGEKPYKCNECGKAFSMHSNLTTHK-VIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTH-QAIHTGKKPYKCNECGKVFTQNAHLANH-RRIHTGEKPYRCTECGKAFRVRSSLTTHM-AIHTGEKRYKCNECGKVFRQSSNLASH-HRMHTGEKPYK 818          

HSP 5 Score: 173.711 bits (439), Expect = 1.295e-45
Identity = 103/278 (37.05%), Postives = 145/278 (52.16%), Query Frame = 3
Query:  774 RPHMCDECGKSFTMQYELKKHQ---------------------------DVVHKGIKPFECQECGERFTYNKYLQRHSMKHKGIKPFKCDQCSAKFITKYSLTSHINIVHKKLKPFHCTQCSMKFSMSAGLKRHINAIHKNLKPFKCDVCDKDFSRKDHLQLHQDTVHKGLKKYSCDQCGVSYGHKSYLKQHIDFVHKKLKPLKCHECDTKYSRKRDLDAHINTVHKKIKSFKFEICGDRFSQSSCLYRHQQIHEGTK-FSCNVCGNSFSRKDSLKKH 1523
            +P+ C+ECGK+FT    L  H+                            V+H G KP++C ECG+ F +N YL  H   H G KP+KC++C   F    +LT+H  ++H   KPF C +C   F+ ++ L  H   IH   KP+KC+ C K FS +  L +HQ T+H G K Y C++CG  + + SYL +H   VH   KP KC+EC   +S   +L  H   +H   K FK   C   F+Q+S L  H++IH G K + CN CG +FS + SL  H
Sbjct:  255 KPYKCNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTH-QLIHTGEKPFKCNECGKLFTQNSHLISHWR-IHTGEKPYKCNECGKAFSVRSSLAIHQ-TIHTGEKPYKCNECGKVFRYNSYLGRHRR-VHTGEKPYKCNECGKAFSMHSNLATH-QVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTH 527          
The following BLAST results are available for this feature:
BLAST of TCONS_00057735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN1601.212e-6936.74Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 ... [more]
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