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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057738 ID=TCONS_00057738|Name=TCONS_00057738|organism=Clytia hemisphaerica|type=transcript|length=2278bpRun BLAST on NCBI protein sequence of TCONS_00057738-protein >TCONS_00057738-protein ID=TCONS_00057738-protein|Name=TCONS_00057738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp MKESILVSGYALNCVVACEGMPKKVSGAKIAFLDFSLMKAKMNLGVLVQIRun BLAST on NCBI transcript from alignment at scaffold_298:140825..155170+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057738 ID=TCONS_00057738|Name=TCONS_00057738|organism=Clytia hemisphaerica|type=transcript|length=14346bp|location=Sequence derived from alignment at scaffold_298:140825..155170+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_298:140825..155170+ >TCONS_00057738 ID=TCONS_00057738|Name=TCONS_00057738|organism=Clytia hemisphaerica|type=CDS|length=8376bp|location=Sequence derived from alignment at scaffold_298:140825..155170+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057738 vs. Swiss-Prot (Human)
Match: TCPA (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1) HSP 1 Score: 547.74 bits (1410), Expect = 0.000e+0 Identity = 260/359 (72.42%), Postives = 308/359 (85.79%), Query Frame = 1
Query: 964 TINVLKAHGGNMKESILVSGYALNCVVACEGMPKKVSGAKIAFLDFSLMKAKMNLGVLVQIEDPAKLDAVRQREADITKERIQKVLSSGANVILLSGGVDDLCMKYFVEAGAMAVRRVKKADLKRIARATGGTVCLSLANLEGEESFDTSLLGHSEEVVQERICDDELILIKNPKTRPAASIILRGANDYMCDEMERSIHDALCVVKRVMESKSIVPGGGCVEAALSIYLENFATSLASREQLAIAEFANSLLVIPKTLTVNAAKDSADLVAKLRAYHNASQVQPEKANLKWVGLDLINGTIRDNKKAGVLEPAMSKIKCLKFATEAAITILRIDDMVKLEPDKKDD--NTYQAARAAG 2034
++N+LKAHG + ES+L+SGYALNCVV +GMPK++ AKIA LDFSL K KM LGV V I DP KLD +RQRE+DITKERIQK+L++GANVIL +GG+DD+C+KYFVEAGAMAVRRV K DLKRIA+A+G T+ +LANLEGEE+F+ ++LG +EEVVQERICDDELILIKN K R +ASIILRGAND+MCDEMERS+HDALCVVKRV+ESKS+VPGGG VEAALSIYLEN+ATS+ SREQLAIAEFA SLLVIP TL VNAA+DS DLVAKLRA+HN +QV PE+ NLKW+GLDL NG RDNK+AGV EP + K+K LKFATEAAITILRIDD++KL P+ KDD +Y+ A +G
Sbjct: 194 SVNILKAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSG 552 HSP 2 Score: 285.804 bits (730), Expect = 0.000e+0 Identity = 135/186 (72.58%), Postives = 162/186 (87.10%), Query Frame = 2
Query: 404 ITGDRTSGNEIREQNVMAASSIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILCELADLQDQEVGDGTTSVVIIAAELLKNATNLLRYKLHPTSIISGYRLACKEACKYIQENIAMSTTDLDREAFLNCCKTSMSSKLVGVDSDFFADMVVDAANAVKKTGSKGETKVPI 961
+ GDR++G IR QNVMAA+SIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAK+LCELADLQD+EVGDGTTSVVIIAAELLKNA L++ K+HPTS+ISGYRLACKEA +YI EN+ ++T +L R+ +N KTSMSSK++G++ DFFA+MVVDA A+K T +G+ + P+
Sbjct: 7 VFGDRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPV 192 The following BLAST results are available for this feature:
BLAST of TCONS_00057738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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