TCONS_00057784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057784
Unique NameTCONS_00057784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057784 ID=TCONS_00057784|Name=TCONS_00057784|organism=Clytia hemisphaerica|type=transcript|length=1241bp
TTCAAATTCAAATTGCTTCCTATAGCAATAACTAttttgtgaaagtttga
agtgaaaagccttaaaattgtttaatttttagaGCAAGTTGGACACTGTC
AATGCCCCATCTCATTTCTTTATAACGCTTCGAAAAAACCTATAAAAACA
TTTACTTAAAAGGGGAACCTAATGCGGCCATTGCGACTGCCTTAGATACC
CCCAGTAAAGACCAATTTGGAAAAACCCAGTTAGGGTGCAAACTGCCTGT
TCCTGACTGACataaaacataaacataaaacTATGTGCAGGTTcaaacgg
gaaatatttgaaaaattagaagATATTTGAGCTATCAAGGTATTACTAAA
TTATCCTGCCATTacaacaagttttatttttctaatacTAAAAGGGGAAA
TATTTGAGTGAGAACAGAAGGTTTCCCTCTAAAATCTATCNAAAATGCTT
GATGATGggcaaaaatgacgtcaaacaGAATAGGTTTTACCATTAcaaga
agttttatttttctaatacTAAAAGGGGAAATATTTGAGTGAGAACAGAA
GGTTTCCCCCTAAAATCTATCAGTATAAACAAAGGAGACGCAAAATATCA
GAAGCAGTGTGTTGTTCAATGAGCAGCGGGGCAAGTTTGTGGAAGTTTTT
agtgttattattattttctaaGGAGGGACGACTTTTAACAAACCGCAAAT
TTACTGTTCTTTCAATTTAGAAACATTTTGAAAGAGTTTTAGATGGAAAA
GATCGCTGAAAATGGCGGCTAAAGAACGTGATGACATATTAGATGACGAG
AAGTTCCAAGCCAGGAACTGGAAACAATACACAGAAAGACAGCTACAGAA
ACTTCACCCTGTTCAAAGAAGCAGATATTTAGCTACAGCAGAAATCAACC
ATTTGATTTATACACAACAAACAGCCATTAAGGCGGTTCGTCTTCAAAGT
CTTTTACCGCCCATTCCCACTAGGATCAAGTTCAAAGACTCGCTGGTCAA
GGAACAGCGCATGCGTGTTGAAGTGTTAATGGAGGACGATTTGGGGCTAC
AAACAACTCGAAAGTTATGCTGACTCAGCACTCTGTCAGTATATGTATAT
TATGTAAATATAGTATCATTTTGTAACTGATAATCGtataaattaatgaa
aatataataataatctGAAACATAATTCAAATTAAAATCCACTGTTCTTT
TCCTattctacagggtgtccggaagaAAGTATCGAGTCACG
Run BLAST on NCBI

transcript from alignment at scaffold_298:293055..296071-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057784 ID=TCONS_00057784|Name=TCONS_00057784|organism=Clytia hemisphaerica|type=transcript|length=3017bp|location=Sequence derived from alignment at scaffold_298:293055..296071- (Clytia hemisphaerica)
TTCAAATTCAAATTGCTTCCTATAGCAATAACTATTTTGTGAAAGTTTGA
AGTGAAAAGCCTTAAAATTGTTTAATTTTTAGAGCAAGTTGGACACTGTC
AATGCCCCATCTCATTTCTTTATAACGCTTCGAAAAAACCTATAAAAACA
TTTACTTAAAAGGGGAACCTAATGCGGCCATTGCGACTGCCTTAGATACC
CCCAGTAAAGACCAATTTGGAAAAACCCAGTTAGGGTGCAAACTGCCTGT
TCCTGACTGACATAAAACATAAACATAAAACTATGTGCAGGTTCAAACGG
GAAATATTTGAAAAATTAGAAGATATTTGAGCTATCAAGGTATTACTAAA
TTATCCTGCCATTACAACAAGTTTTATTTTTCTAATACTAAAAGGGGAAA
TATTTGAGTGAGAACAGAAGGTTTCCCTCTAAAATCTATCNAAAATGCTT
GATGATGGGCAAAAATGACGTCAAACAGAATAGGTTTTACCATTACAAGA
AGTTTTATTTTTCTAATACTAAAAGGGGAAATATTTGAGTGAGAACAGAA
GGTTTCCCCCTAAAATCTATCAGTATAAACAAAGGAGACGCAAAATATCA
GAAGCAGTGTGTTGTTCAATGAGCAGCGGGGCAAGTTTGTGGAAGTTTTT
AGTGTTATTATTATTTTCTAAGGAGGGACGACTTTTAACAAACCGCAAAT
TTACTGTTCTTTCAATTTAGAAACATTTTGAAAGAGTTTTAGATGGAAAA
GATCGCTGAAAATGGCGGTATGTATTTCAAAAAAAAATTATTTATGATAT
CTATATGGTATAATTAGTCATCTGATCAGACCCTTGGCAGGTTATTCACT
ATTCAGAGGAAAAAGAAGAATTTTAATAAAAAAGACAAAAAATTTTTTTT
ATCCTTCATGTGTCATTTTTTTTTCATGAATTATATTCATTTCCCTCTCA
AATCATCTTTCCAACGGTATAAAGCTACTTCAAATTAATTTGATTGTTAT
TATGTGTTCAAGAAGAATCATTGAAATTGTATTCAAAACAAAATGAGTTG
AATTCAGTTTTGATCTTGCTCTTATAATAGGCTAAAGAACGTGATGACAT
ATTAGATGACGAGAAGTTCCAAGCCAGGAACTGGAAACAATACACAGAAA
GACAGCTACAGAAACTTCACCCTGTTCAAAGAAGCAGATATTTAGCTGTG
AGTATTATTTGAACTTATTTAGACGACTTACCAGCCACCTCGCTTTTGTT
TGATATGAGGGTCAGAAATAAGAGTCCGTTGTTTTGATGTTCCAGAAAAT
ATTGTAAATTAACCTCATTGCATTAACTTATATCTAAGTACTGATTTAGT
GTGATGCTTGTACAACATGAAACTTCAAGTACTGTGTTTTTACTGAGAAT
TTACATTAGCTACTTTTCAACCATAATAGTTGAATTGGAGAACGCGACGG
TCTTTTGAATAACTAATTACTCCACAACAGTTACCTAGAGACAAGATAAT
TATCACGTTTTTATTGGCTGAGGAAAAGTAAGGTATGTGGAGTAATTTGT
TACTCGATAGGCCGTCATGTTTCCCAAAAGAACTATTGTCTTTCTTGAAA
ATTTTCTTTCTATTACTATACTGGGAATTACGTTTCAGTCTTTTCGTTGT
TCTTTCAGTCTGCGCCACAATTGGTTTTATGGCGTGAGATGCTAGGCAAT
TCGATCTGCCTAGCCAGGGTGCAGTATGCAGTGCTGACGAGTCCTAATAA
GGACGAAATGCATATGCTGCTCTGCCACCCAAATCTCCTGAAAGAAGATA
GTTGGACAGAAATTCTTTGAATTTCTTCACATATATATGGTGAAGATCAG
AGATCTGACCTCAAGAGAGCAAGTGTTGAAAATACTAAATAAAAAAAAAT
GAAACATAAAAAGGGACTAATATTATTCCAAGAAGTGGACAAAGGGAAAT
TCCCTAGGGAATTCTGTGAATGACTCCTCTAGAGTCAAGCTTTGGAGATA
TATATATATCGGTTTTCGCCGGTAGTGACAAATTTGAGAAATTCGAGCTA
GAGAAATTTTTTTGAAATTTACCACTATTGGAAAACACCAAGGTGTTTTC
GATATGAATATCGTAATTGACGAATCAAAGACTCAACAGAAAAAACCCAT
TCTATTCTTTTTAGACAGCAGAAATCAACCATTTGATTTATACACAACAA
ACAGCCATTAAGGCGGTTCGTCTTCAAAGTCTTTTACCGCCCATTCCCAC
TAGGATCAAGTTCAAAGACTCGCTGGTCAAGGAACAGGTAAGGAAATTGT
CTTATTCTTTTGTTCACAAAGCTTGAGTAAAGATTTGCTTTATCATACCT
GAACATACTACCCCCGTTTTTAGTAAGAAGTTGGAGATTTGATGTTTCAC
AGAAAAGTGCTACCAAAGGTATTTCGGGTTCCATATCTTCCGAAGGACTT
TTCCTTTTGCCTTGAAATTTGACCTTCTTTACCTAAGGTTGAACTACCAC
TGGTGTAAAAATAAATGTTATTAGCATAAATAGAAATTAAAGCTCAATTT
TTTTAATCGCAAATTTGACCGCTAAAAATCGCGAATTTCTCAATCAAAAA
TACATTCAAACATAGCGCTTTTGACCCTCTTAAACAAGCAAAAAAAATTC
CCACATCTCCACAATTATATTTCAATATCAAAAGTTACAACCATTCTTGT
TTCCACTGCCAATTATATCTGGATACACTTTTATATTTGTATAGAGTTAT
TAGTTATTTTGATTTTACTTTCTCATGTTTTAGCGCATGCGTGTTGAAGT
GTTAATGGAGGACGATTTGGGGCTACAAACAACTCGAAAGTTATGCTGAC
TCAGCACTCTGTCAGTATATGTATATTATGTAAATATAGTATCATTTTGT
AACTGATAATCGTATAAATTAATGAAAATATAATAATAATCTGAAACATA
ATTCAAATTAAAATCCACTGTTCTTTTCCTATTCTACAGGGTGTCCGGAA
GAAAGTATCGAGTCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036418XLOC_036418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057784-exon-scaffold_298-1575043694:295305..296071TCONS_00057784-exon-scaffold_298-1575043694:295305..296071Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1575043694:294875..294991TCONS_00057784-exon-scaffold_298-1575043694:294875..294991Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1575043694:293785..293907TCONS_00057784-exon-scaffold_298-1575043694:293785..293907Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1575043694:293055..293288TCONS_00057784-exon-scaffold_298-1575043694:293055..293288Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1510915933:295305..296071TCONS_00057784-exon-scaffold_298-1510915933:295305..296071Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1510915933:294875..294991TCONS_00057784-exon-scaffold_298-1510915933:294875..294991Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1510915933:293785..293907TCONS_00057784-exon-scaffold_298-1510915933:293785..293907Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1510915933:293055..293288TCONS_00057784-exon-scaffold_298-1510915933:293055..293288Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1491911889:295305..296071TCONS_00057784-exon-scaffold_298-1491911889:295305..296071Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1491911889:294875..294991TCONS_00057784-exon-scaffold_298-1491911889:294875..294991Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1491911889:293785..293907TCONS_00057784-exon-scaffold_298-1491911889:293785..293907Clytia hemisphaericaexon
TCONS_00057784-exon-scaffold_298-1491911889:293055..293288TCONS_00057784-exon-scaffold_298-1491911889:293055..293288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:293055..296071 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.859939	0.515056	0.299739	0.146103	2.14745	0.807925	2.18935	2.68261	2.83063	1.94391	2.04952	4.88081	2.0291	3.84166	2.35089	1.51589	1.35237	1.49965	2.97483	2.00425	2.90282	3.30404	0.913741	1.49162	3.16345	3.17253	0.983991	1.44787	1.78046	0.453728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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