TCONS_00057787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057787
Unique NameTCONS_00057787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057787 ID=TCONS_00057787|Name=TCONS_00057787|organism=Clytia hemisphaerica|type=transcript|length=1754bp
aaattttggacaagtgacgaatattttccccgacgaaaattttccccggc
cttaatgcgtttaccaactaccagcaagtgacgaatatttttccccgacg
taaatttttcccgacgaaaattttccccgacgaagttttccccgataagg
tatttattGGTTTTCATTCTTCTAGAGAAGACAGAGAAAACGTTAAGCGA
GGCAGAAGAGAATCGAGTCAAATCATTATTGAAACAACTTGAACAACAGT
TCGAAAGATTAAAACGAAGAATCAAAAGACATGGTCTCCGATATTTCAAG
AAcattctcaaatcaaaacaagaatTGCTTCAACCGGCAGTGAAAGGTCA
GCCATTAAATTTGACGACGtcagcaaaacagaaaatcaACCTCATCAACC
AAACACTTGCAACAATTTCACAAAAACGAAAATTAGAAATGCTGCTAGAC
AAACAGATCGAGAGAAAACTTCAAGAGTTGGAATACTGGCAAAAACAACG
CGAAAAGTTGACGAAAAATCGtaatattaagaaaaaattggaGAAAAGAT
TGACGCAAAAGATTTACAAAGAAGAACAGTTTAATTTGTTGATCAAAGAA
AATGATGAAAGTACGGTTAGTAACAACTCCACTACAACCTCATCTTGTAT
TTGTGAAAAGAAACAGAAGATCAAGAAAGAGAGAAAGAAAAGTTCCAAAA
AGCGAAGAGGATACAAAATGAATTGTTTCTCAATGAGTAAGAAACATTGG
AAGACTCCCCCTTATTGGACTGGACCAGAATTCGTAGCATGCACAAACAC
AGCGAACAGTACATACTGGTGTTtaagaaccatcaattccacgcATAATT
TCCTCTACTGTGAATATTGGACAGGCTTCGTGGAATACTTCGATATGCAA
ACAGACCCTTATCAGttgTACAATAAAGCTGACAACATGACGGCTGACTT
TCAAAAGGAATTGAGTTCACAACTGCAATATATGAGAAAATGTCGTGGCG
CCAAAGAATGTTTCTTGAAAGCTTCTCAATCTTTCTCTGTTAGAAGGGAC
ATGCTACGAAAATGGCGTCGCTACGAGCGGAAAAAGAGACATGGTATATT
CGTTCGGGGACCTTTTATTCGCGACTCGACGGCATCGCGAGAAGGAGCCA
GAAAGATTAAAACCTCAAAATCTTAGCGGTGAAAGAAGAATTTTTGGTGA
GAAGCAGGTAGAAAAGTAGTGATGAAGTGAAgacccagctggtacacaac
gttgttttaacgttcaaataacgttatttggacgttatgaatgtcaaatg
gacgttgttttgacgttgtgtgccggctggggaGTATCCAACCATGGAAG
TTTCTCTGATGGCTTGACCAATAACAGCCATGATTGTCAGTAATTCGTNG
TGTGCCGGCTGGACGAGTATCCAACCATGGAAGTTTCTCTGGTGGCTTGA
CCAATAACAGCCATGATTGTCAGCAATTTGCAAATATCGttggaaaaaaa
tacaaaaaacttacttcaaatttgtaatttttatttaaatatgaaAAGAT
TTGAGTGCGCATGTCTAATGTGTATTAATGAAGAAAATATCCCTGAAAGG
GACACGATAGATTCAGTAGACTAACtaattattgtttttttattttaagt
gaGGAAAAACATGACCctttgtaaataattttttttttgaaaatcatttt
ttcctttcagaaataaaattttcttttaaactaTGAATGATGACAAAACC
GAGA
Run BLAST on NCBI

protein sequence of TCONS_00057787-protein

>TCONS_00057787-protein ID=TCONS_00057787-protein|Name=TCONS_00057787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MLLDKQIERKLQELEYWQKQREKLTKNRNIKKKLEKRLTQKIYKEEQFNL
LIKENDESTVSNNSTTTSSCICEKKQKIKKERKKSSKKRRGYKMNCFSMS
KKHWKTPPYWTGPEFVACTNTANSTYWCLRTINSTHNFLYCEYWTGFVEY
FDMQTDPYQLYNKADNMTADFQKELSSQLQYMRKCRGAKECFLKASQSFS
VRRDMLRKWRRYERKKRHGIFVRGPFIRDSTASREGARKIKTSKS
Run BLAST on NCBI

transcript from alignment at scaffold_298:304699..309558-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057787 ID=TCONS_00057787|Name=TCONS_00057787|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at scaffold_298:304699..309558- (Clytia hemisphaerica)
AAATTTTGGACAAGTGACGAATATTTTCCCCGACGAAAATTTTCCCCGGC
CTTAATGCGTTTACCAACTACCAGCAAGTGACGAATATTTTTCCCCGACG
TAAATTTTTCCCGACGAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGG
TATTTATTGGTTTTCATTCTTCTAGAGAAGACAGAGAAAACGTTAAGCGA
GGCAGAAGAGAATCGAGTCAAATCATTATTGAAACAACTTGAACAACAGT
TCGAAAGATTAAAACGAAGAATCAAAAGACATGGTCTCCGATATTTCAAG
AACATTCTCAAATCAAAACAAGAATTGCTTCAACCGGGTAAGTACACCTT
AATTTTTTTATAAGAACATTAAAAATTTTTGAAGCCTTCGGATGTTCTTA
ACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAACATGCTAACATGCTCT
TGATTTTCGAATATTTTGTGAGTATCTTTGTCCAATAAAATATGGGGTTT
GAAATGTCTAGCTTTATGCGTATTTAAAGGTTTGTTAAACTGCCACTGTG
TGGTTTCGGGAAATTTTAAAAATTAGGAAGATGAAATTTAAATGGGGGTT
TGAGACCCCCTTTGTATATTATTAGCGAGATTATGTATCTAGAGATCTCT
ACGGCTACAGTTAAAGTGGCGAGGGAAATGGTGAGTAAGGCAAGTAATGG
CGGGTGAAAGCAAGTTCGATATTTGACGTACGGCATGTCGACTTTGCTTA
TACGGTGTTTTGGTGTTTTTCCCGTACAGAACAAAGTAGACAACGACATG
TCGCCTTTTGTGACGACCCGTACGTGCAGCCCCGCAATCGTAGCCGTAGA
ATATCTCTGATACATAATCTCGCTATTATTTAACCGTATATAAAATTAAC
ATTTTCATTTTTTTTCACTAGCAGTGAAAGGTCAGCCATTAAATTTGACG
ACGTCAGCAAAACAGAAAATCAACCTCATCAACCAAACACTTGCAACAAT
TTCACAAAAACGAAAATTAGAAATGCTGCTAGACAAACAGATCGAGAGAA
AACTTCAAGAGTTGGAATACTGGCAAAAACAACGCGAAAAGTTGACGAAA
AATCGTAATATTAAGAAAAAATTGGAGAAAAGATTGACGCAAAAGATTTA
CAAAGAAGAACAGTTTAATTTGTTGATCAAAGAAAATGATGGTAAGAATA
TTTGTTCCTCCTTTTTGTCTCATTCTTGACAGTACACGTTTTTTTTATAA
GAACATCCAAAAATTTTGAAGCTTTTTAGTTTTATAAGCCTAAAAATGTT
CTTAACATGTTCTTATTTTCCCCATTTTTTGAACATTTTTGTCCAGTTTC
CTAAGAAATTGGGTATTTTAGAGTCTACAGTACAAAGCCTTAAAATGTTC
TTAACTTGTTCTCAACGTTTTGGTCATGAAAGTCTTATGTTCTTATATAG
TTTGTTCTTATAAAAAAAACGTGTGAAATAAGAATTAACAACAGTGTACA
AAGTTCTTCCGTCCCAGACAGATTTCCATGCCAGAGAAGCTTCTCCGTTT
CCAAATCCGGCAAGATTCTATAAAATTTAAAGATTCTTTGCCCAATTTGT
CTATTTTCCTCTGAGACAAAAAAATGCTTTTACCACTGTTAAAGGTTTCA
TTTTCCATAAGTGTTCCCGTTTTATATCAGACTCATATTTCATATCAGGA
CAGTGTCTACCTATTGTCATATTGTGCTGATATAAGCAAAGAAGTGTTTC
TTTTCCTCTTTCTGACAAATTTTGCTTGCACATCCGGGTCGATCCAATGT
GAAAAAGCTAGTAAATTAAAATTGTTGAGTAAGGGGCCATCCATATAGTA
CGTACGCAGTGAAGGGGGAGAGGGGGTTTAGCAAAAGCGTACATCTATTG
TTTAAATGACATAATTTCTATTGTTCTCTGCGTACAAGGGGGGGGGGGTA
TCAAATTTTTGGAAAATCTTTGCGTACGTACTATATGGACGGCCCCTAAG
CAAACGATATCACTCTTATTTAAAAACAAAACCTTTAACAGTATTTTAAA
CACAACACTTTCTACCATTTCATTTTCACAGAAAGTACGGTTAGTAACAA
CTCCACTACAACCTCATCTTGTATTTGTGAAAAGAAACAGAAGATCAAGA
AAGAGAGAAAGAAAAGTTCCAAAAAGCGAAGAGGATACAAAATGAATTGT
TTCTCAATGAGTAAGAAACATTGGAAGACTCCCCCTTATTGGACTGGTAA
GTGTTGAATCTCAAACCAAACTCGAACCCAGTCCCTTAGTTCGCTTTTGA
TGATTTTGATAACGCTCACGAAAGCTGTATCACGTTCCATCAGTAAAATC
ACAAAGTGATACAAGTGGCCCTGGGTACGAAATTGGTCATTGGTCGAAGT
CGGCTACCAAAATGCACATCAAGGGCCAAAATGGACGATATAGTAAACTT
GAACCCAGTCCCAAAGTTCACTTCTTTATGATTCTGATAGTGCTCACGAA
GGAAACTGTGTCACATCCATCAGTAAAATAAATTGGTTGAGTGGAAGGTA
CTGACTAGGCTGTTTACAGACAAGCCTTTTTTACATTATTTCGTCGCTGA
TGTAATAGGGACCAGCGTAAGCGATCGGAATTAAATTTGGGCCGGGCTTA
ATATGAAAAAAGTGGAGCCTTGGGGGTGAAATAGCCTATACTAGACGCCA
CCCGCGTTTTTTTACGCAATTAACTAAGAAACGGGGATGAAAAATCCCGG
TATTTGACGAGGTGCTCACTAGGGTAATAAGAGCAAGCGTAAAAAGGGCT
GATAAAGTGCTTCATTGAACGATGTTTTTTTATACCAGTTGTCTTCGTTG
ACTTGACTCTTTTTCAATCTTGTATATTTCCAGGACCAGAATTCGTAGCA
TGCACAAACACAGCGAACAGTACATACTGGTGTTTAAGAACCATCAATTC
CACGCATAATTTCCTCTACTGTGAATATTGGACAGGCTTCGTGGAATACT
TCGATATGCAAACAGACCCTTATCAGGTATTTTTTCTCAATATTTAGACT
GGCACGCCAGTCGGGCTGGAACGGTATCACACGGAAAAAGTGAGCGTAGG
AGTTAGGTAAGCGTAGGAAGAAATTTTGGCGGCGGCGGCAAGGGCTGAAA
GCAGCAATCAGCAGCCTCTCACCAACCTTTGCTCGTTGTCCTAGCAGCTC
CTATTCTAGCAAACGCCTGCCGCCTTATGTTCCCGCCCTCTGACATGATT
AATTAACAGACTAGCTTTCTAGTCTACTCAATATTGCGCGTACTTCGTCC
TTCATTCTTTTGTGGCCATGGAGGATAACTGGTGATATACAGATGAATTT
TTTACTTTTCTAAAGAAAGTAGACAGGCTCAGTGGAAGCGAGGAGACTGG
GAAGACTTCAGCATCCCCACTTTTAAGCAAATGATATATTTTTCTCAAAT
TCCTACCAAATTTTATCTCATTTTTAGCCCTCAGCCTCCCCATTTTTACG
GTTGTTCCGTCAGGCCTGGGATTTAGGATTCGACCACAGTCCACGGATTT
TTTTTTCTGTCTTTTATCTTGATTGGCTGAGGCTCAGAATCGGACGGAAG
TATTGATTCTATTTTCATTTTTTTTTTAGTTGTACAATAAAGCTGACAAC
ATGACGGCTGACTTTCAAAAGGAATTGAGTTCACAACTGCAATATATGAG
AAAATGTCGTGGCGCCAAAGAATGTTTCTTGAAAGCTTCTCAATCTTTCT
CTGTTAGAAGGGTAAGAATTAATGTTTTTTTCTCAAACTGTCAAAAAGTT
TGGTTCAGTTTTCCTATAGAGGATTTTCATGTTTAGTATAGTTACGTAAT
TCCCGCCATTATGGAAGCAAATCGTTGCTTCCAAAATGGCGGAAATAATG
TAACTTTAAAAACCTCTATATTTTATTCTGGAAAATAGGGATGATTTTTG
AAGAATTAACAGAAAAATGTCTATTCAAATTACAGAAATTATTTTATACT
AATTTCTAGCTGAGGAAACCAATATTTTAGTTCGAATTATAGAAAGATTC
GAATAATAAAGCCCGAATTAGAGAGAGTTGACCGTAGTGCCAAACCTGCC
TCTGCGTCCTTAACAATGTGTATTTTTCATCATTTTTTCTGATTTTTCTT
CAGGACATGCTACGAAAATGGCGTCGCTACGAGCGGAAAAAGAGACATGG
TATATTCGTTCGGGGACCTTTTATTCGCGACTCGACGGCATCGCGAGAAG
GAGCCAGAAAGATTAAAACCTCAAAATCTTAGCGGTGAAAGAAGAATTTT
TGGTGAGAAGCAGGTAGAAAAGTAGTGATGAAGTGAAGACCCAGCTGGTA
CACAACGTTGTTTTAACGTTCAAATAACGTTATTTGGACGTTATGAATGT
CAAATGGACGTTGTTTTGACGTTGTGTGCCGGCTGGGGAGTATCCAACCA
TGGAAGTTTCTCTGATGGCTTGACCAATAACAGCCATGATTGTCAGTAAT
TCGTNGTGTGCCGGCTGGACGAGTATCCAACCATGGAAGTTTCTCTGGTG
GCTTGACCAATAACAGCCATGATTGTCAGCAATTTGCAAATATCGTTGGA
AAAAAATACAAAAAACTTACTTCAAATTTGTAATTTTTATTTAAATATGA
AAAGATTTGAGTGCGCATGTCTAATGTGTATTAATGAAGAAAATATCCCT
GAAAGGGACACGATAGATTCAGTAGACTAACTAATTATTGTTTTTTTATT
TTAAGTGAGGAAAAACATGACCCTTTGTAAATAATTTTTTTTTTGAAAAT
CATTTTTTCCTTTCAGAAATAAAATTTTCTTTTAAACTATGAATGATGAC
AAAACCGAGA

Coding sequence (CDS) from alignment at scaffold_298:304699..309558-

>TCONS_00057787 ID=TCONS_00057787|Name=TCONS_00057787|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_298:304699..309558- (Clytia hemisphaerica)
GACATGCTACGAAAATGGCGTCGCTACGAGCGGAAAAAGAGACATGGTAT
ATTCGTTCGGGGACCTTTTATTCGCGACTCGACGGCATCGCGAGAAGGAG
CCAGAAAGATTAAAACCTCAAAATCTTAGTTGTACAATAAAGCTGACAAC
ATGACGGCTGACTTTCAAAAGGAATTGAGTTCACAACTGCAATATATGAG
AAAATGTCGTGGCGCCAAAGAATGTTTCTTGAAAGCTTCTCAATCTTTCT
CTGTTAGAAGGGACCAGAATTCGTAGCATGCACAAACACAGCGAACAGTA
CATACTGGTGTTTAAGAACCATCAATTCCACGCATAATTTCCTCTACTGT
GAATATTGGACAGGCTTCGTGGAATACTTCGATATGCAAACAGACCCTTA
TCAGAAAGTACGGTTAGTAACAACTCCACTACAACCTCATCTTGTATTTG
TGAAAAGAAACAGAAGATCAAGAAAGAGAGAAAGAAAAGTTCCAAAAAGC
GAAGAGGATACAAAATGAATTGTTTCTCAATGAGTAAGAAACATTGGAAG
ACTCCCCCTTATTGGACTGATGCTGCTAGACAAACAGATCGAGAGAAAAC
TTCAAGAGTTGGAATACTGGCAAAAACAACGCGAAAAGTTGACGAAAAAT
CGTAATATTAAGAAAAAATTGGAGAAAAGATTGACGCAAAAGATTTACAA
AGAAGAACAGTTTAATTTGTTGATCAAAGAAAATGATGGACATGCTACGA
AAATGGCGTCGCTACGAGCGGAAAAAGAGACATGGTATATTCGTTCGGGG
ACCTTTTATTCGCGACTCGACGGCATCGCGAGAAGGAGCCAGAAAGATTA
AAACCTCAAAATCTTAGTTGTACAATAAAGCTGACAACATGACGGCTGAC
TTTCAAAAGGAATTGAGTTCACAACTGCAATATATGAGAAAATGTCGTGG
CGCCAAAGAATGTTTCTTGAAAGCTTCTCAATCTTTCTCTGTTAGAAGGG
ACCAGAATTCGTAGCATGCACAAACACAGCGAACAGTACATACTGGTGTT
TAAGAACCATCAATTCCACGCATAATTTCCTCTACTGTGAATATTGGACA
GGCTTCGTGGAATACTTCGATATGCAAACAGACCCTTATCAGAAAGTACG
GTTAGTAACAACTCCACTACAACCTCATCTTGTATTTGTGAAAAGAAACA
GAAGATCAAGAAAGAGAGAAAGAAAAGTTCCAAAAAGCGAAGAGGATACA
AAATGAATTGTTTCTCAATGAGTAAGAAACATTGGAAGACTCCCCCTTAT
TGGACTGATGCTGCTAGACAAACAGATCGAGAGAAAACTTCAAGAGTTGG
AATACTGGCAAAAACAACGCGAAAAGTTGACGAAAAATCGTAATATTAAG
AAAAAATTGGAGAAAAGATTGACGCAAAAGATTTACAAAGAAGAACAGTT
TAATTTGTTGATCAAAGAAAATGATGGACATGCTACGAAAATGGCGTCGC
TACGAGCGGAAAAAGAGACATGGTATATTCGTTCGGGGACCTTTTATTCG
CGACTCGACGGCATCGCGAGAAGGAGCCAGAAAGATTAAAACCTCAAAAT
CTTAGTTGTACAATAAAGCTGACAACATGACGGCTGACTTTCAAAAGGAA
TTGAGTTCACAACTGCAATATATGAGAAAATGTCGTGGCGCCAAAGAATG
TTTCTTGAAAGCTTCTCAATCTTTCTCTGTTAGAAGGGACCAGAATTCGT
AGCATGCACAAACACAGCGAACAGTACATACTGGTGTTTAAGAACCATCA
ATTCCACGCATAATTTCCTCTACTGTGAATATTGGACAGGCTTCGTGGAA
TACTTCGATATGCAAACAGACCCTTATCAGAAAGTACGGTTAGTAACAAC
TCCACTACAACCTCATCTTGTATTTGTGAAAAGAAACAGAAGATCAAGAA
AGAGAGAAAGAAAAGTTCCAAAAAGCGAAGAGGATACAAAATGAATTGTT
TCTCAATGAGTAAGAAACATTGGAAGACTCCCCCTTATTGGACTGATGCT
GCTAGACAAACAGATCGAGAGAAAACTTCAAGAGTTGGAATACTGGCAAA
AACAACGCGAAAAGTTGACGAAAAATCGTAATATTAAGAAAAAATTGGAG
AAAAGATTGACGCAAAAGATTTACAAAGAAGAACAGTTTAATTTGTTGAT
CAAAGAAAATGATGGACATGCTACGAAAATGGCGTCGCTACGAGCGGAAA
AAGAGACATGGTATATTCGTTCGGGGACCTTTTATTCGCGACTCGACGGC
ATCGCGAGAAGGAGCCAGAAAGATTAAAACCTCAAAATCTTAGTTGTACA
ATAAAGCTGACAACATGACGGCTGACTTTCAAAAGGAATTGAGTTCACAA
CTGCAATATATGAGAAAATGTCGTGGCGCCAAAGAATGTTTCTTGAAAGC
TTCTCAATCTTTCTCTGTTAGAAGGGACCAGAATTCGTAGCATGCACAAA
CACAGCGAACAGTACATACTGGTGTTTAAGAACCATCAATTCCACGCATA
ATTTCCTCTACTGTGAATATTGGACAGGCTTCGTGGAATACTTCGATATG
CAAACAGACCCTTATCAGAAAGTACGGTTAGTAACAACTCCACTACAACC
TCATCTTGTATTTGTGAAAAGAAACAGAAGATCAAGAAAGAGAGAAAGAA
AAGTTCCAAAAAGCGAAGAGGATACAAAATGAATTGTTTCTCAATGAGTA
AGAAACATTGGAAGACTCCCCCTTATTGGACTGATGCTGCTAGACAAACA
GATCGAGAGAAAACTTCAAGAGTTGGAATACTGGCAAAAACAACGCGAAA
AGTTGACGAAAAATCGTAATATTAAGAAAAAATTGGAGAAAAGATTGACG
CAAAAGATTTACAAAGAAGAACAGTTTAATTTGTTGATCAAAGAAAATGA
TGGACATGCTACGAAAATGGCGTCGCTACGAGCGGAAAAAGAGACATGGT
ATATTCGTTCGGGGACCTTTTATTCGCGACTCGACGGCATCGCGAGAAGG
AGCCAGAAAGATTAAAACCTCAAAATCTTAGTTGTACAATAAAGCTGACA
ACATGACGGCTGACTTTCAAAAGGAATTGAGTTCACAACTGCAATATATG
AGAAAATGTCGTGGCGCCAAAGAATGTTTCTTGAAAGCTTCTCAATCTTT
CTCTGTTAGAAGGGACCAGAATTCGTAGCATGCACAAACACAGCGAACAG
TACATACTGGTGTTTAAGAACCATCAATTCCACGCATAATTTCCTCTACT
GTGAATATTGGACAGGCTTCGTGGAATACTTCGATATGCAAACAGACCCT
TATCAGAAAGTACGGTTAGTAACAACTCCACTACAACCTCATCTTGTATT
TGTGAAAAGAAACAGAAGATCAAGAAAGAGAGAAAGAAAAGTTCCAAAAA
GCGAAGAGGATACAAAATGAATTGTTTCTCAATGAGTAAGAAACATTGGA
AGACTCCCCCTTATTGGACTGATGCTGCTAGACAAACAGATCGAGAGAAA
ACTTCAAGAGTTGGAATACTGGCAAAAACAACGCGAAAAGTTGACGAAAA
ATCGTAATATTAAGAAAAAATTGGAGAAAAGATTGACGCAAAAGATTTAC
AAAGAAGAACAGTTTAATTTGTTGATCAAAGAAAATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036419XLOC_036419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057787-exon-scaffold_298-1575043694:309222..309558TCONS_00057787-exon-scaffold_298-1575043694:309222..309558Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1575043694:308368..308637TCONS_00057787-exon-scaffold_298-1575043694:308368..308637Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1575043694:307313..307477TCONS_00057787-exon-scaffold_298-1575043694:307313..307477Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1575043694:306533..306675TCONS_00057787-exon-scaffold_298-1575043694:306533..306675Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1575043694:305798..305929TCONS_00057787-exon-scaffold_298-1575043694:305798..305929Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1575043694:304699..305405TCONS_00057787-exon-scaffold_298-1575043694:304699..305405Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1510915933:309222..309558TCONS_00057787-exon-scaffold_298-1510915933:309222..309558Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1510915933:308368..308637TCONS_00057787-exon-scaffold_298-1510915933:308368..308637Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1510915933:307313..307477TCONS_00057787-exon-scaffold_298-1510915933:307313..307477Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1510915933:306533..306675TCONS_00057787-exon-scaffold_298-1510915933:306533..306675Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1510915933:305798..305929TCONS_00057787-exon-scaffold_298-1510915933:305798..305929Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1510915933:304699..305405TCONS_00057787-exon-scaffold_298-1510915933:304699..305405Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1491911889:309222..309558TCONS_00057787-exon-scaffold_298-1491911889:309222..309558Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1491911889:308368..308637TCONS_00057787-exon-scaffold_298-1491911889:308368..308637Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1491911889:307313..307477TCONS_00057787-exon-scaffold_298-1491911889:307313..307477Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1491911889:306533..306675TCONS_00057787-exon-scaffold_298-1491911889:306533..306675Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1491911889:305798..305929TCONS_00057787-exon-scaffold_298-1491911889:305798..305929Clytia hemisphaericaexon
TCONS_00057787-exon-scaffold_298-1491911889:304699..305405TCONS_00057787-exon-scaffold_298-1491911889:304699..305405Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057787-proteinTCONS_00057787-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:304699..309558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12096	3.60413	7.40787	5.98825	96.8624	75.6101	28.1558	29.3865	12.5454	12.8991	6.2675	6.19946	3.77318	3.04949	8.75003	8.66347	12.8112	14.6309	9.58574	9.90289	6.68643	7.23377	21.9405	25.3406	7.55825	14.5992	58.3245	67.0569	34.0105	35.1459
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017850Alkaline_phosphatase_core
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00057787 vs. Swiss-Prot (Human)
Match: SULF2 (Extracellular sulfatase Sulf-2 OS=Homo sapiens GN=SULF2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.494e-31
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:  718 MNCFSMSKKHWKTPPYWTGPEFVACTNTANSTYWCLRTINSTHNFLYCEYWTGFVEYFDMQTDPYQLYNKADNMTADFQKELSSQLQYMRKCRGAKEC 1011
            + CF+   +HW+T P+WT   F ACT+  N+TYWC+RTIN THNFL+CE+ TGF+EYFD+ TDPYQL N  + +  D   +L  QL  +R C+G K+C
Sbjct:  725 LTCFTHDNQHWQTAPFWTLGPFCACTSANNNTYWCMRTINETHNFLFCEFATGFLEYFDLNTDPYQLMNAVNTLDRDVLNQLHVQLMELRSCKGYKQC 822
The following BLAST results are available for this feature:
BLAST of TCONS_00057787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SULF21.494e-3152.04Extracellular sulfatase Sulf-2 OS=Homo sapiens GN=... [more]
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