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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057792 ID=TCONS_00057792|Name=TCONS_00057792|organism=Clytia hemisphaerica|type=transcript|length=1984bp
tatttagaaaaataaaaacaaaaaatttaaaaaatgacagaaaatCAAGA
ATCGCAGAAAGATGAGATCGAAGCTTTGACTTCCATATATGGTAAAGACT
TTTCCTTATTAGGAGAAAATACATTCGATTTGAGGATATGTTGCGATGAC
ATCAAATGGTGGGCTGTCACTGTTTCTGTTCTGTTGCCAGAGAATTATCC
AAGTGAAGAAGCACCTCTCTATGAAATACACACTGAATGCCTAGCAGGTT
CTGAGCTAGGTGAACTCCAAAATGAACTGGACAACATTTGGCAAGAGAAT
ATTGGAACGAACGTGCTATACATGTGGACTGAGAAAATACGTGAATATCT
TTTCGAACGCTACGAACGCGCTAAGTTGTTCATCGAATCACCCGAAGAAG
ATAAACAGCGTGAACGAGCTTTAACAGACCTTATGCGTGAGGAGGATGCA
AGCGAACAAATCGAAACGCAAGACGTACcacaaaaagaagaagagacTTC
GACTCAGGTTATGGATGAAACAGTCCCTGAAATTCACAGTAGCGACACGA
TCACGTTGAAGAAAAGTACTTTCCAAGGACATTCAGCCGTGGTTCATACA
CTTACTGATATTAGTGAGGTTAAGCATACAAGGATAATCACGACGACGGA
CGAAAAATGTATAAGGCTAGTGaaaatacgaaatttgattggttgaaact
cactagcctgttaaattttcgttcgtcgtcgtgattttaccgatttactt
aacctcactattaaAGCTGTTCTGAAGAAACTAAaacagaataaaaaagt
ttcacaGGCTAGTCATAATATTGTAGCGTACAGGCTAGTTGGTGTGAATG
AGACTTCTTTTATACAAGATTACGCAGATGATGGCGAAGTGAATGCGGGC
GGCCGCCTCTTACATTTACTACAAATTATGGATGTGAAAAATATTGTTAT
TGTAGTTAGTCGATGGTATGGTGGAATTCTCTTAGGTCCTGATCGTTTCC
GCTTAATCAATAACGTGGCTCGTGAAGCGATCATTGGGTTGGGAATTTAT
GAACCTAAACAAGCTGCTAAGCAACGACCGAAGAAGAAGAAACACTAACT
GAAATTActttattaaaatttctttcGGGGGAGGTTGTTAGTAGTTCATG
TCCATCCGACATAAAATTAGGTAAAATCTAGATATGAAGTTTGGGGATTG
ATAATTATCTCGGAAGTAGAGCTCGCATCTTCGACAACAGGTTAGATCTA
TATTTCGAAATTCGTTGACAAAAGCTACAAAATGTCAATAATACACTTGA
CGTTTtgtaattcgattttcaagagcCGTCACACTCGCCTATTccataaa
aatttttttgggtttttttttcttctcgtaAACACAGACAAGAGATGACA
TTTGCCATTATGTTTTTTTGGTTTACGCTTGGTCTTTTAGAGAgtgaaat
tttgatatttcgaGGAATGATCATGGCGTGAACACCATGGGAATGATTAA
TTTATCGGCgatcaaaaaatatctgcaatctgattggttaaaaagagtac
aatatatcttgtattttacatgtacaaaatataaattgacgagaTATGTT
TTtacattgtagcggtagaagcaatctaacgtcactttgctacaaaagtg
ccctgctcTTTTTCCCAAAACAAAGACAAAGTGcatttttgggtcaccga
taaagcAGTTATCAGACCTCGTACAATatagaaatatttcactcgCTCCG
GattttttccgtatattttcctcgcctaaagtaAAGGCTCAGAAAATATT
GTACgaaaaaatctcggaactcgtaaaatatttctcatgttgtactcgca
actgtccgttAACTTTTACATATTGCTATATTTTttaaaagggaaaattt
ttacaattcaTGAATTTTAGTATATTTAGGGTATTTTATAAGGTACAGAA
CTTTGAGTTATGAGCTGGTGATAACAATTTCTTC Run BLAST on NCBI protein sequence of TCONS_00057792-protein >TCONS_00057792-protein ID=TCONS_00057792-protein|Name=TCONS_00057792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MTENQESQKDEIEALTSIYGKDFSLLGENTFDLRICCDDIKWWAVTVSVL
LPENYPSEEAPLYEIHTECLAGSELGELQNELDNIWQENIGTNVLYMWTE
KIREYLFERYERAKLFIESPEEDKQRERALTDLMREEDASEQIETQDVPQ
KEEETSTQVMDETVPEIHSSDTITLKKSTFQGHSAVVHTLTDISEVKHTR
IITTTDEKCIRLVKIRNLIG Run BLAST on NCBI transcript from alignment at scaffold_298:371822..375713- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057792 ID=TCONS_00057792|Name=TCONS_00057792|organism=Clytia hemisphaerica|type=transcript|length=3892bp|location=Sequence derived from alignment at scaffold_298:371822..375713- (Clytia hemisphaerica)
TATTTAGAAAAATAAAAACAAAAAATTTAAAAAATGACAGAAAATCAAGA
ATCGCAGAAAGATGAGATCGAAGCTTTGACTTCCATATATGGTAAAGACT
TTTCCTTATTAGGAGAAAATACATTCGATTTGAGGATATGTTGCGATGAC
ATCAAATGGTGGGCTGTCACTGTTTCTGTTCTGTTGCCAGAGAATTATCC
AAGTGAAGAAGCACCTCTCTATGAAATACACACTGAATGCCTAGCAGGTT
TGTAAAGTGCTTATTTTTTACTTAGTTATTGTTGCCTCGGTATATGTTCT
AGTCTGCTCATTTTTAAATGTTATAGTCTTTATTTGGACTTGATTGCAAA
GTACAAATTTGAACTTAGCTTTGAAGGTAAGAGAGACGATTTCTTCGAAA
TTTTTAAAGTACTAAAGTGAATTTAGACTGATTTTCTTGTGACGTAACCT
TAGACTATCTGCGCCAAATGTGAATAATTTTCGGAATTAGTGTACATCAA
ATCATGGAGGTACAAAGAAAAACAGGAGAAGTATGCTATTGTAACCAAGC
TCGCCCTACGATTGAAGAAGTTACGAGGTTTGCATGATCATAATCTCATG
TATCGTGCATTTTTAATGAGCTCTTTTGTCAATTGGTGAAATCTAATTGG
CCATTTTCAGTTTTAGAAATTAGATGAGCTGAGATCCATTGTTTCTGACT
TTGATGTAAGAAAATATTTTGACTAAAAAAAGGCCTGTAAACTTGACAAT
CCTTCATCAAATGACAAGGTTTTTCAGTTAATGTTTTCTTCAATGTGAGC
TCAATTGCTTGATATTCTCCAGCGACTTTTTGTCTAAAAATTGATTCTGA
AATCGCGTGTGCTTATAAATAACTTTCCATTTTCTATCTTAAGAAAATAT
ATTTTCGAAACAAAATTTAACGGATAACGAAATGGCACATAAACTTGTTT
TGTGGGGCTAAGTTTTATTTAATTCTCGTATATTAGAAAGCTAATATCTT
CAATACTGATAGTTAGAATGTTCCGAGCAAACTTGAGTTCTACTAAAGAG
TCTTTTTTCATCCGGCGAGCTTAGAATTTCTTTTGATACATTTTATAAAA
GAAATCAAAAGACTTTAACGACCAATTACCGACAAATTAAACTCCTATTT
TTCTTTAAACCTCCATGATAAAATGTTCACTCTCCTGTGCTAGGACTTTT
AAAACCGCCAATCTTCTCGGAGAGGATCCGAATCCGAATCCGAATCCTCT
ATAAAACCGCAGATAGTATAGGGAGCACGAATCCGTTAGTGGATGCCAAC
CAATGAAATATAAGCCGGAAGGGCTAGAATCGAATTTTAACCTTTCTCAG
GCAAGAAAAAGTAAAACCTTAAATTGTACGCCGTATTTTTTTATTACGAA
TTGGATTTAGCGATTTCTTTGTTTGTTTGTTTGTTTGTTTTTGAAATATA
GCGAAAATTTTTACTTTCCATCCGGAATTTGTATAAAAACCACACGGAAC
GCTTAAGGCCGCACAACTTTGGTAGGATTTGTTGGCTTCAAATCCTACCA
AGGAGATTCGATTCTAGCTCTTCGGGCTTATACTTCATTGATACCAACAG
CCTTGGATAAAAAATCTCCCATGTTGCATTCTCACCAACTAAATTCTTCC
AAACCAATTCTTCTTAGGTTCTGAGCTAGGTGAACTCCAAAATGAACTGG
ACAACATTTGGCAAGAGAATATTGGAACGAACGTGCTATACATGTGGACT
GAGAAAATACGTGAATATCTTTTCGAACGCTACGAACGCGCTAAGTTGTT
CATCGAATCACCCGAAGAAGATAAACAGCGTGAACGTAAGTAGAAGCTCT
GTTTGTAGGTCATTTTATATTTCACGGTTGTGTTTTGAGGACATCAACAA
AGCCAGTATCTCAGAACTGCAACTTTCCCGTCTGAGACGGAAGTCCGGCT
GGATGAGATTCTTCACTAGCACCGTCCTAGTTGACGATGCTATCGTCCGT
TTTAGAGGGTCAGTAACCGTGGGAAAATATATAAGCTATGCAGGGCGTCA
GGGCGGTTTACAGGAAGAAAGTGGCGGTAGAGTTTAGATTTTAGCAAAAT
TGGTTGTAGTATACCAAGTATATTCCCATCTAAAGATGCCTTGTCAGGTT
CCTCACAGAAACGCCGGATTGCAAGTAAAATCTAGCTCGAGAATTAAAAA
ATGCACCGCTCGAAAATAATAAAAAAAAACTAGATTCAACCCGTCGTCAT
GATTGCGGTGCACATCTTAGGATTTCACTTTATCTTACCTTGAAAAACGA
AGATTTCTTTTATTTATTCCCAGGAGCTTTAACAGACCTTATGCGTGAGG
AGGATGCAAGCGAACAAATCGAAACGCAAGACGTACCACAAAAAGAAGAA
GAGACTTCGACTCAGGTTATGGATGAAACAGTCCCTGAAATTCACAGTAG
CGACACGATCACGTTGAAGAAAAGTACTTTCCAAGGACATTCAGCCGTGG
TTCATACACTTACTGATATTAGTGAGGTTAAGCATACAAGGATAATCACG
ACGACGGACGAAAAATGTATAAGGCTAGTGAAAATACGAAATTTGATTGG
TTGAAACTCACTAGCCTGTTAAATTTTCGTTCGTCGTCGTGATTTTACCG
ATTTACTTAACCTCACTATTAAAGCTGTTCTGAAGAAACTAAAACAGAAT
AAAAAAGTTTCACAGGCTAGTCATAATATTGTAGCGTACAGGCTAGTTGG
TGTGAATGAGACTTCTTTTATACAAGATTACGCAGATGATGGCGAAGTGA
ATGCGGGCGGCCGCCTCTTACATTTACTACAAATTATGGATGTGAAAAAT
ATTGTTATTGTAGTTAGTCGATGGTATGGTGGAATTCTCTTAGGTCCTGA
TCGTTTCCGCTTAATCAATAACGTGGCTCGTGAAGCGATCATTGGGTTGG
GAATTTATGAACCTAAACAAGCTGCTAAGCAACGACCGAAGAAGAAGAAA
CACTAACTGAAATTACTTTATTAAAATTTCTTTCGGGGGAGGTTGTTAGT
AGTTCATGTCCATCCGACATAAAATTAGGTAAAATCTAGATATGAAGTTT
GGGGATTGATAATTATCTCGGAAGTAGAGCTCGCATCTTCGACAACAGGT
TAGATCTATATTTCGAAATTCGTTGACAAAAGCTACAAAATGTCAATAAT
ACACTTGACGTTTTGTAATTCGATTTTCAAGAGCCGTCACACTCGCCTAT
TCCATAAAAATTTTTTTGGGTTTTTTTTTCTTCTCGTAAACACAGACAAG
AGATGACATTTGCCATTATGTTTTTTTGGTTTACGCTTGGTCTTTTAGAG
AGTGAAATTTTGATATTTCGAGGAATGATCATGGCGTGAACACCATGGGA
ATGATTAATTTATCGGCGATCAAAAAATATCTGCAATCTGATTGGTTAAA
AAGAGTACAATATATCTTGTATTTTACATGTACAAAATATAAATTGACGA
GATATGTTTTTACATTGTAGCGGTAGAAGCAATCTAACGTCACTTTGCTA
CAAAAGTGCCCTGCTCTTTTTCCCAAAACAAAGACAAAGTGCATTTTTGG
GTCACCGATAAAGCAGTTATCAGACCTCGTACAATATAGAAATATTTCAC
TCGCTCCGGATTTTTTCCGTATATTTTCCTCGCCTAAAGTAAAGGCTCAG
AAAATATTGTACGAAAAAATCTCGGAACTCGTAAAATATTTCTCATGTTG
TACTCGCAACTGTCCGTTAACTTTTACATATTGCTATATTTTTTAAAAGG
GAAAATTTTTACAATTCATGAATTTTAGTATATTTAGGGTATTTTATAAG
GTACAGAACTTTGAGTTATGAGCTGGTGATAACAATTTCTTC Coding sequence (CDS) from alignment at scaffold_298:371822..375713- >TCONS_00057792 ID=TCONS_00057792|Name=TCONS_00057792|organism=Clytia hemisphaerica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_298:371822..375713- (Clytia hemisphaerica)
GAGCTTTAACAGACCTTATGCGTGAGGAGGATGCAAGCGAACAAATCGAA
ACGCAAGACGTACCACAAAAAGAAGAAGAGACTTCGACTCAGGTTATGGA
TGAAACAGTCCCTGAAATTCACAGTAGCGACACGATCACGTTGAAGAAAA
GTACTTTCCAAGGACATTCAGCCGTGGTTCATACACTTACTGATATTAGT
GAGGTTAAGCATACAAGGATAATCACGACGACGGACGAAAAATGTATAAG
GCTAGTGAAAATACGAAATTTGATTGGTTGAGTTCTGAGCTAGGTGAACT
CCAAAATGAACTGGACAACATTTGGCAAGAGAATATTGGAACGAACGTGC
TATACATGTGGACTGAGAAAATACGTGAATATCTTTTCGAACGCTACGAA
CGCGCTAAGTTGTTCATCGAATCACCCGAAGAAGATAAACAGCGTGAACA
TGACAGAAAATCAAGAATCGCAGAAAGATGAGATCGAAGCTTTGACTTCC
ATATATGGTAAAGACTTTTCCTTATTAGGAGAAAATACATTCGATTTGAG
GATATGTTGCGATGACATCAAATGGTGGGCTGTCACTGTTTCTGTTCTGT
TGCCAGAGAATTATCCAAGTGAAGAAGCACCTCTCTATGAAATACACACT
GAATGCCTAGCAGGAGCTTTAACAGACCTTATGCGTGAGGAGGATGCAAG
CGAACAAATCGAAACGCAAGACGTACCACAAAAAGAAGAAGAGACTTCGA
CTCAGGTTATGGATGAAACAGTCCCTGAAATTCACAGTAGCGACACGATC
ACGTTGAAGAAAAGTACTTTCCAAGGACATTCAGCCGTGGTTCATACACT
TACTGATATTAGTGAGGTTAAGCATACAAGGATAATCACGACGACGGACG
AAAAATGTATAAGGCTAGTGAAAATACGAAATTTGATTGGTTGAGTTCTG
AGCTAGGTGAACTCCAAAATGAACTGGACAACATTTGGCAAGAGAATATT
GGAACGAACGTGCTATACATGTGGACTGAGAAAATACGTGAATATCTTTT
CGAACGCTACGAACGCGCTAAGTTGTTCATCGAATCACCCGAAGAAGATA
AACAGCGTGAACATGACAGAAAATCAAGAATCGCAGAAAGATGAGATCGA
AGCTTTGACTTCCATATATGGTAAAGACTTTTCCTTATTAGGAGAAAATA
CATTCGATTTGAGGATATGTTGCGATGACATCAAATGGTGGGCTGTCACT
GTTTCTGTTCTGTTGCCAGAGAATTATCCAAGTGAAGAAGCACCTCTCTA
TGAAATACACACTGAATGCCTAGCAGGAGCTTTAACAGACCTTATGCGTG
AGGAGGATGCAAGCGAACAAATCGAAACGCAAGACGTACCACAAAAAGAA
GAAGAGACTTCGACTCAGGTTATGGATGAAACAGTCCCTGAAATTCACAG
TAGCGACACGATCACGTTGAAGAAAAGTACTTTCCAAGGACATTCAGCCG
TGGTTCATACACTTACTGATATTAGTGAGGTTAAGCATACAAGGATAATC
ACGACGACGGACGAAAAATGTATAAGGCTAGTGAAAATACGAAATTTGAT
TGGTTGAGTTCTGAGCTAGGTGAACTCCAAAATGAACTGGACAACATTTG
GCAAGAGAATATTGGAACGAACGTGCTATACATGTGGACTGAGAAAATAC
GTGAATATCTTTTCGAACGCTACGAACGCGCTAAGTTGTTCATCGAATCA
CCCGAAGAAGATAAACAGCGTGAACATGACAGAAAATCAAGAATCGCAGA
AAGATGAGATCGAAGCTTTGACTTCCATATATGGTAAAGACTTTTCCTTA
TTAGGAGAAAATACATTCGATTTGAGGATATGTTGCGATGACATCAAATG
GTGGGCTGTCACTGTTTCTGTTCTGTTGCCAGAGAATTATCCAAGTGAAG
AAGCACCTCTCTATGAAATACACACTGAATGCCTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00057792-exon-scaffold_298-1575043694:375467..375713 | TCONS_00057792-exon-scaffold_298-1575043694:375467..375713 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1575043694:373879..374046 | TCONS_00057792-exon-scaffold_298-1575043694:373879..374046 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1575043694:371822..373390 | TCONS_00057792-exon-scaffold_298-1575043694:371822..373390 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1510915933:375467..375713 | TCONS_00057792-exon-scaffold_298-1510915933:375467..375713 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1510915933:373879..374046 | TCONS_00057792-exon-scaffold_298-1510915933:373879..374046 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1510915933:371822..373390 | TCONS_00057792-exon-scaffold_298-1510915933:371822..373390 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1491911889:375467..375713 | TCONS_00057792-exon-scaffold_298-1491911889:375467..375713 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1491911889:373879..374046 | TCONS_00057792-exon-scaffold_298-1491911889:373879..374046 | Clytia hemisphaerica | exon |
| TCONS_00057792-exon-scaffold_298-1491911889:371822..373390 | TCONS_00057792-exon-scaffold_298-1491911889:371822..373390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:371822..375713 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006575 | RWD-domain |
| IPR016135 | UBQ-conjugating_enzyme/RWD |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00057792 vs. Swiss-Prot (Human)
Match: IMPCT (Protein IMPACT OS=Homo sapiens GN=IMPACT PE=1 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 1.343e-43 Identity = 111/340 (32.65%), Postives = 177/340 (52.06%), Query Frame = 1
Query: 43 NQESQKDEIEALTSIYGKDFSLLGE--NTFDLRICCD-DIKWWAVTVSVLLPENYPSEEAPLYEIHTECLAGSELGELQNELDNIWQENIGTNVLYMWTEKIREYLFERYERAKLFIESPEEDKQRERALTD------LMREEDASEQIETQDVPQKEEETSTQVMDETVPEIHSSDTITLKKSTFQGHSAVVHTLTDISEVKHTRIITTTDEKCIRLVKIRNLIG*NSLAC*IFVRRRDFTDLLNLTIXXXXXXXXXXXXXXXXSHNIVAYRLVGVNETSFIQDYADDGEVNAGGRLLHLLQIMDVKNIVIVVSRWYGGILLGPDRFRLINNVAREAII 1035
+ + Q +EIEA+ +IYG+++ ++ + F +RI D D W + + V+LP YP P+Y+++ L G E +L N L+ I+ +NIG ++LY+W EKIR+ L +++++ P+ K+ E + L + ++S + D+ ET T+V E +P I IT ++STFQ H A V C + VK+ + + + + + T HNI AYR+ ++ +F+QD DDGE AGGRLLHL++I++VKN+++VVSRWYGGILLGPDRF+ INN AR ++
Sbjct: 8 SDQRQNEEIEAMAAIYGEEWCVIDDCAKIFCIRISDDIDDPKWTLCLQVMLPNEYPGTAPPIYQLNAPWLKGQERADLSNSLEEIYIQNIGESILYLWVEKIRDVLI---QKSQMTEPGPDVKKKTEEEDVECEDDLILACQPESSLKALDFDI----SETRTEVEVEELPPIDHGIPITDRRSTFQAHLAPV--------------------VCPKQVKM------------VLSKLYENKKIASAT------------------HNIYAYRIYCEDKQTFLQDCEDDGETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILV 290
The following BLAST results are available for this feature:
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