Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=transcript|length=2482bp TGAAACATGAACAACACCGATACCTCTTCAATCATTCCCTGCACATTCAA TTATCCAGACATCAATGACGTCACACGGTACGTGTTCGGCTCGTCATTCA TACTATGTGCATTATTGGCTGCTATTGGCAACACAATCTCATTGGTTATC CTTAATAAACCGTCCATGCGTACAAAGTCCAACCGGTTTTTAACATCATT AGCTGTATCAGACAGTTTGGTTGGATTTTTGTTATGTCCGTTGACTGCAA TACAATTAATCATACCAGACCTTTTAACCAACTGCTACGCTGAGATTCTC CGCGTTTTTCTGTCGACCTCATTGGTAGGAATTTCAGCCATAATGGTAGC CTTAGTTGCGTACGACCGTTATTTAATGCTGtcagatttatcaaaatatt acaagaaaatgagtaattttaaatcgaaaatttatattttgtttgcATGG ATTTTACCGGCTGCATTACAGTTATTCTACATGGTTCATGGAGTAATTTA TTTATTGGTAATTTGTGTTTTGGCGGTGGGTCCTTTTGTTATTATTGTGG TCTCATACCGCTTGATGACATCAACAATGCGCAAAAAGACAGCCGAGTTG GCCGCGCATTCTAAACTTGGATCAAACGCACAGAAAGTAGAACGAACGGA TAGAAGAAATTTAAAGCTGGCTCGCAAGCTAGTTGTGTTGGTTTTGTTTT ATATTGGATGTTTACTACCGGCGTTATTCAACTTTTTAGCAGAAATAACC ATCCGCGTTTTAAAGAAAGAGAAGCCAGCTAGCCTTCAAACTTTAACAGT CTTCGCACTTTTTTGTGCATCTGTCAACTCGGTGATCAATCCTGCAATTT ATGTTTCAAAATATCCCGAGTTCAAACGAGAATTTTGGAAATTGTTTGGC AGGAAGAGTCGTCGGTCTTCGTACCTTTCAGAATTTTCGTCTATTTTCAC AAGACGATCAGAAAAACAATAACTTTCAATAAATGAACCTTTACAATtag ctcttccagaaaatgttcgtacatgggggtggaggatatatacTTGCTCT GTtttggggtaattttgctccgtttgagggtaattttgaatatgtCCGGG GGTAAAATTGGAAAAGTCCAATATGTGAAAGGCtattttattccaaaaaa tgttatcagACCCAACCGGTCAAAACAATACCTATATAACGTCATAGTAA CGTTGTATGTGAAAAAAGTACTAGGTAGCTATAATTCCCGGGGCGGGGAT GGGGTACTAGgacaaaatgggttacggggatgcaccgctggtcagggtat cTTTTTTAATCTCCGCGAGTCCCAGATAGGGTCACAAAAgcaccaaaata gaaaagtcagtccctcgtagggtgccttttttggaaaatttggggaattT CGGTCCCATTggggaatttcagtcccattggggaatttcagtcccattca gggtcaccgttttcgcaaatttcggcaaaatttttggaaaaacgagtccc acgtggggtccatttttcgaacctcatcAGAGCATCCCCGTCGGTCAGCA AGGGTAGTGCCCCCGGGCTATAATTCCAGGGAGTGGGGGCACTCAAAGTC AGctacagtaaaacctccaattaacggacactctaaaaggcggacgcTTC TGGTTAGTGGACAATTCTATTTTCCCCGCtcatttcctagtcaaatcctc acaaaaaagtttctaaaatgcggacacttctaattggCGGACACTAACCC TACTCCTcaatggtgtccgctaattggaggttcTACTGTAGTGACTGTAG GTGTATTTTTAGGCTTCCAAAAGTACATTGTTAGGGTTGAACGAGTGAAA GTGCGCATTGAATCCAAATCGATTGCACCCCCGGGTTTAATTGAAACTAA CTTAAGCTTAGTTAGCCCATagtaaaaatgattttctttttacgGGATTC AAGCCCACATGTTTTACAGCGACTTTTGCCTGAAtggggcttttccagaa aaaatttgaatatgggggtagaggatataacaattttcagtgatttacac cccggacaaagtgacttttggcctCCCGGACAACGcgtttacccccggac aagcatcagttgaccccccggacaacccaaattacccctggccagagcaa atttaccccccggacaaggcaaattttgatggtttttcGCTACCCCCAGG ACAATATATCCTATACCCCCATGTacagacattttctggaagagcccaat cgtAATTTTTTAAACAGTATATTCTTTTCATAGAAATTTCAATGAAGTTT GGCTTAGATATAACgtcaaattaagaacaataagGGCTTGAgaattaatt tattgtttttataatgaaaaGAATGTATGTAGCTAATTTAGTAAATTGTA GATATAAATAACTTTATTTTGCAGTAGGTTCGTCTTGCAATTCCTACAtt aataacacgcatgcgtaatttgtcgttctttt Run BLAST on NCBI protein sequence of TCONS_00057816-protein >TCONS_00057816-protein ID=TCONS_00057816-protein|Name=TCONS_00057816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MNNTDTSSIIPCTFNYPDINDVTRYVFGSSFILCALLAAIGNTISLVILN KPSMRTKSNRFLTSLAVSDSLVGFLLCPLTAIQLIIPDLLTNCYAEILRV FLSTSLVGISAIMVALVAYDRYLMLSDLSKYYKKMSNFKSKIYILFAWIL PAALQLFYMVHGVIYLLVICVLAVGPFVIIVVSYRLMTSTMRKKTAELAA HSKLGSNAQKVERTDRRNLKLARKLVVLVLFYIGCLLPALFNFLAEITIR VLKKEKPASLQTLTVFALFCASVNSVINPAIYVSKYPEFKREFWKLFGRK SRRSSYLSEFSSIFTRRSEKQ Run BLAST on NCBI transcript from alignment at scaffold_298:265418..267899 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at scaffold_298:265418..267899 (Clytia hemisphaerica) aaaagaacgacaaattacgcatgcgtgttattaaTGTAGGAATTGCAAGA
CGAACCTACTGCAAAATAAAGTTATTTATATCTACAATTTACTAAATTAG
CTACATACATTCttttcattataaaaacaataaattaattcTCAAGCCct
tattgttcttaatttgacGTTATATCTAAGCCAAACTTCATTGAAATTTC
TATGAAAAGAATATACTGTTTAAAAAATTacgattgggctcttccagaaa
atgtctgtACATGGGGGTATAGGATATATTGTCCTGGGGGTAGCgaaaaa
ccatcaaaatttgccttgtccggggggtaaatttgctctggccaggggta
atttgggttgtccggggggtcaactgatgcttgtccgggggtaaacgCGT
TGTCCGGGaggccaaaagtcactttgtccggggtgtaaatcactgaaaat
tgttatatcctctacccccatattcaaattttttctggaaaagccccaTT
CAGGCAAAAGTCGCTGTAAAACATGTGGGCTTGAATCCcgtaaaaagaaa
atcatttttactATGGGCTAACTAAGCTTAAGTTAGTTTCAATTAAACCC
GGGGGTGCAATCGATTTGGATTCAATGCGCACTTTCACTCGTTCAACCCT
AACAATGTACTTTTGGAAGCCTAAAAATACACCTACAGTCACTACAGTAg
aacctccaattagcggacaccattgAGGAGTAGGGTTAGTGTCCGccaat
tagaagtgtccgcattttagaaacttttttgtgaggatttgactaggaaa
tgaGCGGGGAAAATAGAATTGTCCACTAACCAGAAgcgtccgccttttag
agtgtccgttaattggaggttttactgtagCTGACTTTGAGTGCCCCCAC
TCCCTGGAATTATAGCCCGGGGGCACTACCCTTGCTGACCGACGGGGATG
CTCTgatgaggttcgaaaaatggaccccacgtgggactcgtttttccaaa
aattttgccgaaatttgcgaaaacggtgaccctgaatgggactgaaattc
cccaatgggactgaaattccccAATGGGACCGAaattccccaaattttcc
aaaaaaggcaccctacgagggactgacttttctattttggtgcTTTTGTG
ACCCTATCTGGGACTCGCGGAGATTAAAAAAgataccctgaccagcggtg
catccccgtaacccattttgtcCTAGTACCCCATCCCCGCCCCGGGAATT
ATAGCTACCTAGTACTTTTTTCACATACAACGTTACTATGACGTTATATA
GGTATTGTTTTGACCGGTTGGGTctgataacattttttggaataaaataG
CCTTTCACATATTGGACTTTTCCAATTTTACCCCCGGacatattcaaaat
taccctcaaacggagcaaaattaccccaaaACAGAGCAAgtatatatcct
ccacccccatgtacgaacattttctggaagagctaATTGTAAAGGTTCAT
TTATTGAAAGTTATTGTTTTTCTGATCGTCTTGTGAAAATAGACGAAAAT
TCTGAAAGGTACGAAGACCGACGACTCTTCCTGCCAAACAATTTCCAAAA
TTCTCGTTTGAACTCGGGATATTTTGAAACATAAATTGCAGGATTGATCA
CCGAGTTGACAGATGCACAAAAAAGTGCGAAGACTGTTAAAGTTTGAAGG
CTAGCTGGCTTCTCTTTCTTTAAAACGCGGATGGTTATTTCTGCTAAAAA
GTTGAATAACGCCGGTAGTAAACATCCAATATAAAACAAAACCAACACAA
CTAGCTTGCGAGCCAGCTTTAAATTTCTTCTATCCGTTCGTTCTACTTTC
TGTGCGTTTGATCCAAGTTTAGAATGCGCGGCCAACTCGGCTGTCTTTTT
GCGCATTGTTGATGTCATCAAGCGGTATGAGACCACAATAATAACAAAAG
GACCCACCGCCAAAACACAAATTACCAATAAATAAATTACTCCATGAACC
ATGTAGAATAACTGTAATGCAGCCGGTAAAATCCATgcaaacaaaatata
aattttcgatttaaaattactcattttcttgtaatattttgataaatctg
aCAGCATTAAATAACGGTCGTACGCAACTAAGGCTACCATTATGGCTGAA
ATTCCTACCAATGAGGTCGACAGAAAAACGCGGAGAATCTCAGCGTAGCA
GTTGGTTAAAAGGTCTGGTATGATTAATTGTATTGCAGTCAACGGACATA
ACAAAAATCCAACCAAACTGTCTGATACAGCTAATGATGTTAAAAACCGG
TTGGACTTTGTACGCATGGACGGTTTATTAAGGATAACCAATGAGATTGT
GTTGCCAATAGCAGCCAATAATGCACATAGTATGAATGACGAGCCGAACA
CGTACCGTGTGACGTCATTGATGTCTGGATAATTGAATGTGCAGGGAATG
ATTGAAGAGGTATCGGTGTTGTTCATGTTTCA Coding sequence (CDS) from alignment at scaffold_298:265418..267899 >TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_298:265418..267899 (Clytia hemisphaerica) TTATTGTTTTTCTGATCGTCTTGTGAAAATAGACGAAAATTCTGAAAGGT ACGAAGACCGACGACTCTTCCTGCCAAACAATTTCCAAAATTCTCGTTTG AACTCGGGATATTTTGAAACATAAATTGCAGGATTGATCACCGAGTTGAC AGATGCACAAAAAAGTGCGAAGACTGTTAAAGTTTGAAGGCTAGCTGGCT TCTCTTTCTTTAAAACGCGGATGGTTATTTCTGCTAAAAAGTTGAATAAC GCCGGTAGTAAACATCCAATATAAAACAAAACCAACACAACTAGCTTGCG AGCCAGCTTTAAATTTCTTCTATCCGTTCGTTCTACTTTCTGTGCGTTTG ATCCAAGTTTAGAATGCGCGGCCAACTCGGCTGTCTTTTTGCGCATTGTT GATGTCATCAAGCGGTATGAGACCACAATAATAACAAAAGGACCCACCGC CAAAACACAAATTACCAATAAATAAATTACTCCATGAACCATGTAGAATA ACTGTAATGCAGCCGGTAAAATCCATgcaaacaaaatataaattttcgat ttaaaattactcattttcttgtaatattttgataaatctgaCAGCATTAA ATAACGGTCGTACGCAACTAAGGCTACCATTATGGCTGAAATTCCTACCA ATGAGGTCGACAGAAAAACGCGGAGAATCTCAGCGTAGCAGTTGGTTAAA AGGTCTGGTATGATTAATTGTATTGCAGTCAACGGACATAACAAAAATCC AACCAAACTGTCTGATACAGCTAATGATGTTAAAAACCGGTTGGACTTTG TACGCATGGACGGTTTATTAAGGATAACCAATGAGATTGTGTTGCCAATA GCAGCCAATAATGCACATAGTATGAATGACGAGCCGAACACGTACCGTGT GACGTCATTGATGTCTGGATAATTGAATGTGCAGGGAATGATTGAAGAGG TATCGGTGTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057816-exon-scaffold_298-1491911889:265418..267899 | TCONS_00057816-exon-scaffold_298-1491911889:265418..267899 | Clytia hemisphaerica | exon |
TCONS_00057816-exon-scaffold_298-1510915933:265418..267899 | TCONS_00057816-exon-scaffold_298-1510915933:265418..267899 | Clytia hemisphaerica | exon |
TCONS_00057816-exon-scaffold_298-1575043694:265418..267899 | TCONS_00057816-exon-scaffold_298-1575043694:265418..267899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_298 | supercontig | scaffold_298:265418..267899 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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