TCONS_00057816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057816
Unique NameTCONS_00057816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=transcript|length=2482bp
TGAAACATGAACAACACCGATACCTCTTCAATCATTCCCTGCACATTCAA
TTATCCAGACATCAATGACGTCACACGGTACGTGTTCGGCTCGTCATTCA
TACTATGTGCATTATTGGCTGCTATTGGCAACACAATCTCATTGGTTATC
CTTAATAAACCGTCCATGCGTACAAAGTCCAACCGGTTTTTAACATCATT
AGCTGTATCAGACAGTTTGGTTGGATTTTTGTTATGTCCGTTGACTGCAA
TACAATTAATCATACCAGACCTTTTAACCAACTGCTACGCTGAGATTCTC
CGCGTTTTTCTGTCGACCTCATTGGTAGGAATTTCAGCCATAATGGTAGC
CTTAGTTGCGTACGACCGTTATTTAATGCTGtcagatttatcaaaatatt
acaagaaaatgagtaattttaaatcgaaaatttatattttgtttgcATGG
ATTTTACCGGCTGCATTACAGTTATTCTACATGGTTCATGGAGTAATTTA
TTTATTGGTAATTTGTGTTTTGGCGGTGGGTCCTTTTGTTATTATTGTGG
TCTCATACCGCTTGATGACATCAACAATGCGCAAAAAGACAGCCGAGTTG
GCCGCGCATTCTAAACTTGGATCAAACGCACAGAAAGTAGAACGAACGGA
TAGAAGAAATTTAAAGCTGGCTCGCAAGCTAGTTGTGTTGGTTTTGTTTT
ATATTGGATGTTTACTACCGGCGTTATTCAACTTTTTAGCAGAAATAACC
ATCCGCGTTTTAAAGAAAGAGAAGCCAGCTAGCCTTCAAACTTTAACAGT
CTTCGCACTTTTTTGTGCATCTGTCAACTCGGTGATCAATCCTGCAATTT
ATGTTTCAAAATATCCCGAGTTCAAACGAGAATTTTGGAAATTGTTTGGC
AGGAAGAGTCGTCGGTCTTCGTACCTTTCAGAATTTTCGTCTATTTTCAC
AAGACGATCAGAAAAACAATAACTTTCAATAAATGAACCTTTACAATtag
ctcttccagaaaatgttcgtacatgggggtggaggatatatacTTGCTCT
GTtttggggtaattttgctccgtttgagggtaattttgaatatgtCCGGG
GGTAAAATTGGAAAAGTCCAATATGTGAAAGGCtattttattccaaaaaa
tgttatcagACCCAACCGGTCAAAACAATACCTATATAACGTCATAGTAA
CGTTGTATGTGAAAAAAGTACTAGGTAGCTATAATTCCCGGGGCGGGGAT
GGGGTACTAGgacaaaatgggttacggggatgcaccgctggtcagggtat
cTTTTTTAATCTCCGCGAGTCCCAGATAGGGTCACAAAAgcaccaaaata
gaaaagtcagtccctcgtagggtgccttttttggaaaatttggggaattT
CGGTCCCATTggggaatttcagtcccattggggaatttcagtcccattca
gggtcaccgttttcgcaaatttcggcaaaatttttggaaaaacgagtccc
acgtggggtccatttttcgaacctcatcAGAGCATCCCCGTCGGTCAGCA
AGGGTAGTGCCCCCGGGCTATAATTCCAGGGAGTGGGGGCACTCAAAGTC
AGctacagtaaaacctccaattaacggacactctaaaaggcggacgcTTC
TGGTTAGTGGACAATTCTATTTTCCCCGCtcatttcctagtcaaatcctc
acaaaaaagtttctaaaatgcggacacttctaattggCGGACACTAACCC
TACTCCTcaatggtgtccgctaattggaggttcTACTGTAGTGACTGTAG
GTGTATTTTTAGGCTTCCAAAAGTACATTGTTAGGGTTGAACGAGTGAAA
GTGCGCATTGAATCCAAATCGATTGCACCCCCGGGTTTAATTGAAACTAA
CTTAAGCTTAGTTAGCCCATagtaaaaatgattttctttttacgGGATTC
AAGCCCACATGTTTTACAGCGACTTTTGCCTGAAtggggcttttccagaa
aaaatttgaatatgggggtagaggatataacaattttcagtgatttacac
cccggacaaagtgacttttggcctCCCGGACAACGcgtttacccccggac
aagcatcagttgaccccccggacaacccaaattacccctggccagagcaa
atttaccccccggacaaggcaaattttgatggtttttcGCTACCCCCAGG
ACAATATATCCTATACCCCCATGTacagacattttctggaagagcccaat
cgtAATTTTTTAAACAGTATATTCTTTTCATAGAAATTTCAATGAAGTTT
GGCTTAGATATAACgtcaaattaagaacaataagGGCTTGAgaattaatt
tattgtttttataatgaaaaGAATGTATGTAGCTAATTTAGTAAATTGTA
GATATAAATAACTTTATTTTGCAGTAGGTTCGTCTTGCAATTCCTACAtt
aataacacgcatgcgtaatttgtcgttctttt
Run BLAST on NCBI

protein sequence of TCONS_00057816-protein

>TCONS_00057816-protein ID=TCONS_00057816-protein|Name=TCONS_00057816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MNNTDTSSIIPCTFNYPDINDVTRYVFGSSFILCALLAAIGNTISLVILN
KPSMRTKSNRFLTSLAVSDSLVGFLLCPLTAIQLIIPDLLTNCYAEILRV
FLSTSLVGISAIMVALVAYDRYLMLSDLSKYYKKMSNFKSKIYILFAWIL
PAALQLFYMVHGVIYLLVICVLAVGPFVIIVVSYRLMTSTMRKKTAELAA
HSKLGSNAQKVERTDRRNLKLARKLVVLVLFYIGCLLPALFNFLAEITIR
VLKKEKPASLQTLTVFALFCASVNSVINPAIYVSKYPEFKREFWKLFGRK
SRRSSYLSEFSSIFTRRSEKQ
Run BLAST on NCBI

transcript from alignment at scaffold_298:265418..267899

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at scaffold_298:265418..267899 (Clytia hemisphaerica)
aaaagaacgacaaattacgcatgcgtgttattaaTGTAGGAATTGCAAGA CGAACCTACTGCAAAATAAAGTTATTTATATCTACAATTTACTAAATTAG CTACATACATTCttttcattataaaaacaataaattaattcTCAAGCCct tattgttcttaatttgacGTTATATCTAAGCCAAACTTCATTGAAATTTC TATGAAAAGAATATACTGTTTAAAAAATTacgattgggctcttccagaaa atgtctgtACATGGGGGTATAGGATATATTGTCCTGGGGGTAGCgaaaaa ccatcaaaatttgccttgtccggggggtaaatttgctctggccaggggta atttgggttgtccggggggtcaactgatgcttgtccgggggtaaacgCGT TGTCCGGGaggccaaaagtcactttgtccggggtgtaaatcactgaaaat tgttatatcctctacccccatattcaaattttttctggaaaagccccaTT CAGGCAAAAGTCGCTGTAAAACATGTGGGCTTGAATCCcgtaaaaagaaa atcatttttactATGGGCTAACTAAGCTTAAGTTAGTTTCAATTAAACCC GGGGGTGCAATCGATTTGGATTCAATGCGCACTTTCACTCGTTCAACCCT AACAATGTACTTTTGGAAGCCTAAAAATACACCTACAGTCACTACAGTAg aacctccaattagcggacaccattgAGGAGTAGGGTTAGTGTCCGccaat tagaagtgtccgcattttagaaacttttttgtgaggatttgactaggaaa tgaGCGGGGAAAATAGAATTGTCCACTAACCAGAAgcgtccgccttttag agtgtccgttaattggaggttttactgtagCTGACTTTGAGTGCCCCCAC TCCCTGGAATTATAGCCCGGGGGCACTACCCTTGCTGACCGACGGGGATG CTCTgatgaggttcgaaaaatggaccccacgtgggactcgtttttccaaa aattttgccgaaatttgcgaaaacggtgaccctgaatgggactgaaattc cccaatgggactgaaattccccAATGGGACCGAaattccccaaattttcc aaaaaaggcaccctacgagggactgacttttctattttggtgcTTTTGTG ACCCTATCTGGGACTCGCGGAGATTAAAAAAgataccctgaccagcggtg catccccgtaacccattttgtcCTAGTACCCCATCCCCGCCCCGGGAATT ATAGCTACCTAGTACTTTTTTCACATACAACGTTACTATGACGTTATATA GGTATTGTTTTGACCGGTTGGGTctgataacattttttggaataaaataG CCTTTCACATATTGGACTTTTCCAATTTTACCCCCGGacatattcaaaat taccctcaaacggagcaaaattaccccaaaACAGAGCAAgtatatatcct ccacccccatgtacgaacattttctggaagagctaATTGTAAAGGTTCAT TTATTGAAAGTTATTGTTTTTCTGATCGTCTTGTGAAAATAGACGAAAAT TCTGAAAGGTACGAAGACCGACGACTCTTCCTGCCAAACAATTTCCAAAA TTCTCGTTTGAACTCGGGATATTTTGAAACATAAATTGCAGGATTGATCA CCGAGTTGACAGATGCACAAAAAAGTGCGAAGACTGTTAAAGTTTGAAGG CTAGCTGGCTTCTCTTTCTTTAAAACGCGGATGGTTATTTCTGCTAAAAA GTTGAATAACGCCGGTAGTAAACATCCAATATAAAACAAAACCAACACAA CTAGCTTGCGAGCCAGCTTTAAATTTCTTCTATCCGTTCGTTCTACTTTC TGTGCGTTTGATCCAAGTTTAGAATGCGCGGCCAACTCGGCTGTCTTTTT GCGCATTGTTGATGTCATCAAGCGGTATGAGACCACAATAATAACAAAAG GACCCACCGCCAAAACACAAATTACCAATAAATAAATTACTCCATGAACC ATGTAGAATAACTGTAATGCAGCCGGTAAAATCCATgcaaacaaaatata aattttcgatttaaaattactcattttcttgtaatattttgataaatctg aCAGCATTAAATAACGGTCGTACGCAACTAAGGCTACCATTATGGCTGAA ATTCCTACCAATGAGGTCGACAGAAAAACGCGGAGAATCTCAGCGTAGCA GTTGGTTAAAAGGTCTGGTATGATTAATTGTATTGCAGTCAACGGACATA ACAAAAATCCAACCAAACTGTCTGATACAGCTAATGATGTTAAAAACCGG TTGGACTTTGTACGCATGGACGGTTTATTAAGGATAACCAATGAGATTGT GTTGCCAATAGCAGCCAATAATGCACATAGTATGAATGACGAGCCGAACA CGTACCGTGTGACGTCATTGATGTCTGGATAATTGAATGTGCAGGGAATG ATTGAAGAGGTATCGGTGTTGTTCATGTTTCA

Coding sequence (CDS) from alignment at scaffold_298:265418..267899

>TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_298:265418..267899 (Clytia hemisphaerica)
TTATTGTTTTTCTGATCGTCTTGTGAAAATAGACGAAAATTCTGAAAGGT
ACGAAGACCGACGACTCTTCCTGCCAAACAATTTCCAAAATTCTCGTTTG
AACTCGGGATATTTTGAAACATAAATTGCAGGATTGATCACCGAGTTGAC
AGATGCACAAAAAAGTGCGAAGACTGTTAAAGTTTGAAGGCTAGCTGGCT
TCTCTTTCTTTAAAACGCGGATGGTTATTTCTGCTAAAAAGTTGAATAAC
GCCGGTAGTAAACATCCAATATAAAACAAAACCAACACAACTAGCTTGCG
AGCCAGCTTTAAATTTCTTCTATCCGTTCGTTCTACTTTCTGTGCGTTTG
ATCCAAGTTTAGAATGCGCGGCCAACTCGGCTGTCTTTTTGCGCATTGTT
GATGTCATCAAGCGGTATGAGACCACAATAATAACAAAAGGACCCACCGC
CAAAACACAAATTACCAATAAATAAATTACTCCATGAACCATGTAGAATA
ACTGTAATGCAGCCGGTAAAATCCATgcaaacaaaatataaattttcgat
ttaaaattactcattttcttgtaatattttgataaatctgaCAGCATTAA
ATAACGGTCGTACGCAACTAAGGCTACCATTATGGCTGAAATTCCTACCA
ATGAGGTCGACAGAAAAACGCGGAGAATCTCAGCGTAGCAGTTGGTTAAA
AGGTCTGGTATGATTAATTGTATTGCAGTCAACGGACATAACAAAAATCC
AACCAAACTGTCTGATACAGCTAATGATGTTAAAAACCGGTTGGACTTTG
TACGCATGGACGGTTTATTAAGGATAACCAATGAGATTGTGTTGCCAATA
GCAGCCAATAATGCACATAGTATGAATGACGAGCCGAACACGTACCGTGT
GACGTCATTGATGTCTGGATAATTGAATGTGCAGGGAATGATTGAAGAGG
TATCGGTGTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036446XLOC_036446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057816-proteinTCONS_00057816-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057816-exon-scaffold_298-1491911889:265418..267899TCONS_00057816-exon-scaffold_298-1491911889:265418..267899Clytia hemisphaericaexon
TCONS_00057816-exon-scaffold_298-1510915933:265418..267899TCONS_00057816-exon-scaffold_298-1510915933:265418..267899Clytia hemisphaericaexon
TCONS_00057816-exon-scaffold_298-1575043694:265418..267899TCONS_00057816-exon-scaffold_298-1575043694:265418..267899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:265418..267899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.215016 tpm) - - (2.2327 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344543 0.215016 0.301809 0.435176 0.632353 0.567154 0.576601 0.763335 0.396103 0.676472 0.603395 0.490402 0.907983 0.9113 0.240201 0.352123 0.789875 0.940737 1.64565 1.55336 2.06229 2.2327 0.806489 0.996934 1.44835 1.84776 1.74642 0.914123 1.44438 0.948114
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800200022002400Sequence
Match NameE-valueIdentityDescription
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