|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=transcript|length=2482bp
TGAAACATGAACAACACCGATACCTCTTCAATCATTCCCTGCACATTCAA
TTATCCAGACATCAATGACGTCACACGGTACGTGTTCGGCTCGTCATTCA
TACTATGTGCATTATTGGCTGCTATTGGCAACACAATCTCATTGGTTATC
CTTAATAAACCGTCCATGCGTACAAAGTCCAACCGGTTTTTAACATCATT
AGCTGTATCAGACAGTTTGGTTGGATTTTTGTTATGTCCGTTGACTGCAA
TACAATTAATCATACCAGACCTTTTAACCAACTGCTACGCTGAGATTCTC
CGCGTTTTTCTGTCGACCTCATTGGTAGGAATTTCAGCCATAATGGTAGC
CTTAGTTGCGTACGACCGTTATTTAATGCTGtcagatttatcaaaatatt
acaagaaaatgagtaattttaaatcgaaaatttatattttgtttgcATGG
ATTTTACCGGCTGCATTACAGTTATTCTACATGGTTCATGGAGTAATTTA
TTTATTGGTAATTTGTGTTTTGGCGGTGGGTCCTTTTGTTATTATTGTGG
TCTCATACCGCTTGATGACATCAACAATGCGCAAAAAGACAGCCGAGTTG
GCCGCGCATTCTAAACTTGGATCAAACGCACAGAAAGTAGAACGAACGGA
TAGAAGAAATTTAAAGCTGGCTCGCAAGCTAGTTGTGTTGGTTTTGTTTT
ATATTGGATGTTTACTACCGGCGTTATTCAACTTTTTAGCAGAAATAACC
ATCCGCGTTTTAAAGAAAGAGAAGCCAGCTAGCCTTCAAACTTTAACAGT
CTTCGCACTTTTTTGTGCATCTGTCAACTCGGTGATCAATCCTGCAATTT
ATGTTTCAAAATATCCCGAGTTCAAACGAGAATTTTGGAAATTGTTTGGC
AGGAAGAGTCGTCGGTCTTCGTACCTTTCAGAATTTTCGTCTATTTTCAC
AAGACGATCAGAAAAACAATAACTTTCAATAAATGAACCTTTACAATtag
ctcttccagaaaatgttcgtacatgggggtggaggatatatacTTGCTCT
GTtttggggtaattttgctccgtttgagggtaattttgaatatgtCCGGG
GGTAAAATTGGAAAAGTCCAATATGTGAAAGGCtattttattccaaaaaa
tgttatcagACCCAACCGGTCAAAACAATACCTATATAACGTCATAGTAA
CGTTGTATGTGAAAAAAGTACTAGGTAGCTATAATTCCCGGGGCGGGGAT
GGGGTACTAGgacaaaatgggttacggggatgcaccgctggtcagggtat
cTTTTTTAATCTCCGCGAGTCCCAGATAGGGTCACAAAAgcaccaaaata
gaaaagtcagtccctcgtagggtgccttttttggaaaatttggggaattT
CGGTCCCATTggggaatttcagtcccattggggaatttcagtcccattca
gggtcaccgttttcgcaaatttcggcaaaatttttggaaaaacgagtccc
acgtggggtccatttttcgaacctcatcAGAGCATCCCCGTCGGTCAGCA
AGGGTAGTGCCCCCGGGCTATAATTCCAGGGAGTGGGGGCACTCAAAGTC
AGctacagtaaaacctccaattaacggacactctaaaaggcggacgcTTC
TGGTTAGTGGACAATTCTATTTTCCCCGCtcatttcctagtcaaatcctc
acaaaaaagtttctaaaatgcggacacttctaattggCGGACACTAACCC
TACTCCTcaatggtgtccgctaattggaggttcTACTGTAGTGACTGTAG
GTGTATTTTTAGGCTTCCAAAAGTACATTGTTAGGGTTGAACGAGTGAAA
GTGCGCATTGAATCCAAATCGATTGCACCCCCGGGTTTAATTGAAACTAA
CTTAAGCTTAGTTAGCCCATagtaaaaatgattttctttttacgGGATTC
AAGCCCACATGTTTTACAGCGACTTTTGCCTGAAtggggcttttccagaa
aaaatttgaatatgggggtagaggatataacaattttcagtgatttacac
cccggacaaagtgacttttggcctCCCGGACAACGcgtttacccccggac
aagcatcagttgaccccccggacaacccaaattacccctggccagagcaa
atttaccccccggacaaggcaaattttgatggtttttcGCTACCCCCAGG
ACAATATATCCTATACCCCCATGTacagacattttctggaagagcccaat
cgtAATTTTTTAAACAGTATATTCTTTTCATAGAAATTTCAATGAAGTTT
GGCTTAGATATAACgtcaaattaagaacaataagGGCTTGAgaattaatt
tattgtttttataatgaaaaGAATGTATGTAGCTAATTTAGTAAATTGTA
GATATAAATAACTTTATTTTGCAGTAGGTTCGTCTTGCAATTCCTACAtt
aataacacgcatgcgtaatttgtcgttctttt Run BLAST on NCBI protein sequence of TCONS_00057816-protein >TCONS_00057816-protein ID=TCONS_00057816-protein|Name=TCONS_00057816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MNNTDTSSIIPCTFNYPDINDVTRYVFGSSFILCALLAAIGNTISLVILN
KPSMRTKSNRFLTSLAVSDSLVGFLLCPLTAIQLIIPDLLTNCYAEILRV
FLSTSLVGISAIMVALVAYDRYLMLSDLSKYYKKMSNFKSKIYILFAWIL
PAALQLFYMVHGVIYLLVICVLAVGPFVIIVVSYRLMTSTMRKKTAELAA
HSKLGSNAQKVERTDRRNLKLARKLVVLVLFYIGCLLPALFNFLAEITIR
VLKKEKPASLQTLTVFALFCASVNSVINPAIYVSKYPEFKREFWKLFGRK
SRRSSYLSEFSSIFTRRSEKQ Run BLAST on NCBI transcript from alignment at scaffold_298:265418..267899 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at scaffold_298:265418..267899 (Clytia hemisphaerica)
aaaagaacgacaaattacgcatgcgtgttattaaTGTAGGAATTGCAAGA
CGAACCTACTGCAAAATAAAGTTATTTATATCTACAATTTACTAAATTAG
CTACATACATTCttttcattataaaaacaataaattaattcTCAAGCCct
tattgttcttaatttgacGTTATATCTAAGCCAAACTTCATTGAAATTTC
TATGAAAAGAATATACTGTTTAAAAAATTacgattgggctcttccagaaa
atgtctgtACATGGGGGTATAGGATATATTGTCCTGGGGGTAGCgaaaaa
ccatcaaaatttgccttgtccggggggtaaatttgctctggccaggggta
atttgggttgtccggggggtcaactgatgcttgtccgggggtaaacgCGT
TGTCCGGGaggccaaaagtcactttgtccggggtgtaaatcactgaaaat
tgttatatcctctacccccatattcaaattttttctggaaaagccccaTT
CAGGCAAAAGTCGCTGTAAAACATGTGGGCTTGAATCCcgtaaaaagaaa
atcatttttactATGGGCTAACTAAGCTTAAGTTAGTTTCAATTAAACCC
GGGGGTGCAATCGATTTGGATTCAATGCGCACTTTCACTCGTTCAACCCT
AACAATGTACTTTTGGAAGCCTAAAAATACACCTACAGTCACTACAGTAg
aacctccaattagcggacaccattgAGGAGTAGGGTTAGTGTCCGccaat
tagaagtgtccgcattttagaaacttttttgtgaggatttgactaggaaa
tgaGCGGGGAAAATAGAATTGTCCACTAACCAGAAgcgtccgccttttag
agtgtccgttaattggaggttttactgtagCTGACTTTGAGTGCCCCCAC
TCCCTGGAATTATAGCCCGGGGGCACTACCCTTGCTGACCGACGGGGATG
CTCTgatgaggttcgaaaaatggaccccacgtgggactcgtttttccaaa
aattttgccgaaatttgcgaaaacggtgaccctgaatgggactgaaattc
cccaatgggactgaaattccccAATGGGACCGAaattccccaaattttcc
aaaaaaggcaccctacgagggactgacttttctattttggtgcTTTTGTG
ACCCTATCTGGGACTCGCGGAGATTAAAAAAgataccctgaccagcggtg
catccccgtaacccattttgtcCTAGTACCCCATCCCCGCCCCGGGAATT
ATAGCTACCTAGTACTTTTTTCACATACAACGTTACTATGACGTTATATA
GGTATTGTTTTGACCGGTTGGGTctgataacattttttggaataaaataG
CCTTTCACATATTGGACTTTTCCAATTTTACCCCCGGacatattcaaaat
taccctcaaacggagcaaaattaccccaaaACAGAGCAAgtatatatcct
ccacccccatgtacgaacattttctggaagagctaATTGTAAAGGTTCAT
TTATTGAAAGTTATTGTTTTTCTGATCGTCTTGTGAAAATAGACGAAAAT
TCTGAAAGGTACGAAGACCGACGACTCTTCCTGCCAAACAATTTCCAAAA
TTCTCGTTTGAACTCGGGATATTTTGAAACATAAATTGCAGGATTGATCA
CCGAGTTGACAGATGCACAAAAAAGTGCGAAGACTGTTAAAGTTTGAAGG
CTAGCTGGCTTCTCTTTCTTTAAAACGCGGATGGTTATTTCTGCTAAAAA
GTTGAATAACGCCGGTAGTAAACATCCAATATAAAACAAAACCAACACAA
CTAGCTTGCGAGCCAGCTTTAAATTTCTTCTATCCGTTCGTTCTACTTTC
TGTGCGTTTGATCCAAGTTTAGAATGCGCGGCCAACTCGGCTGTCTTTTT
GCGCATTGTTGATGTCATCAAGCGGTATGAGACCACAATAATAACAAAAG
GACCCACCGCCAAAACACAAATTACCAATAAATAAATTACTCCATGAACC
ATGTAGAATAACTGTAATGCAGCCGGTAAAATCCATgcaaacaaaatata
aattttcgatttaaaattactcattttcttgtaatattttgataaatctg
aCAGCATTAAATAACGGTCGTACGCAACTAAGGCTACCATTATGGCTGAA
ATTCCTACCAATGAGGTCGACAGAAAAACGCGGAGAATCTCAGCGTAGCA
GTTGGTTAAAAGGTCTGGTATGATTAATTGTATTGCAGTCAACGGACATA
ACAAAAATCCAACCAAACTGTCTGATACAGCTAATGATGTTAAAAACCGG
TTGGACTTTGTACGCATGGACGGTTTATTAAGGATAACCAATGAGATTGT
GTTGCCAATAGCAGCCAATAATGCACATAGTATGAATGACGAGCCGAACA
CGTACCGTGTGACGTCATTGATGTCTGGATAATTGAATGTGCAGGGAATG
ATTGAAGAGGTATCGGTGTTGTTCATGTTTCA Coding sequence (CDS) from alignment at scaffold_298:265418..267899 >TCONS_00057816 ID=TCONS_00057816|Name=TCONS_00057816|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_298:265418..267899 (Clytia hemisphaerica)
TTATTGTTTTTCTGATCGTCTTGTGAAAATAGACGAAAATTCTGAAAGGT
ACGAAGACCGACGACTCTTCCTGCCAAACAATTTCCAAAATTCTCGTTTG
AACTCGGGATATTTTGAAACATAAATTGCAGGATTGATCACCGAGTTGAC
AGATGCACAAAAAAGTGCGAAGACTGTTAAAGTTTGAAGGCTAGCTGGCT
TCTCTTTCTTTAAAACGCGGATGGTTATTTCTGCTAAAAAGTTGAATAAC
GCCGGTAGTAAACATCCAATATAAAACAAAACCAACACAACTAGCTTGCG
AGCCAGCTTTAAATTTCTTCTATCCGTTCGTTCTACTTTCTGTGCGTTTG
ATCCAAGTTTAGAATGCGCGGCCAACTCGGCTGTCTTTTTGCGCATTGTT
GATGTCATCAAGCGGTATGAGACCACAATAATAACAAAAGGACCCACCGC
CAAAACACAAATTACCAATAAATAAATTACTCCATGAACCATGTAGAATA
ACTGTAATGCAGCCGGTAAAATCCATgcaaacaaaatataaattttcgat
ttaaaattactcattttcttgtaatattttgataaatctgaCAGCATTAA
ATAACGGTCGTACGCAACTAAGGCTACCATTATGGCTGAAATTCCTACCA
ATGAGGTCGACAGAAAAACGCGGAGAATCTCAGCGTAGCAGTTGGTTAAA
AGGTCTGGTATGATTAATTGTATTGCAGTCAACGGACATAACAAAAATCC
AACCAAACTGTCTGATACAGCTAATGATGTTAAAAACCGGTTGGACTTTG
TACGCATGGACGGTTTATTAAGGATAACCAATGAGATTGTGTTGCCAATA
GCAGCCAATAATGCACATAGTATGAATGACGAGCCGAACACGTACCGTGT
GACGTCATTGATGTCTGGATAATTGAATGTGCAGGGAATGATTGAAGAGG
TATCGGTGTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057816-exon-scaffold_298-1491911889:265418..267899 | TCONS_00057816-exon-scaffold_298-1491911889:265418..267899 | Clytia hemisphaerica | exon |
| TCONS_00057816-exon-scaffold_298-1510915933:265418..267899 | TCONS_00057816-exon-scaffold_298-1510915933:265418..267899 | Clytia hemisphaerica | exon |
| TCONS_00057816-exon-scaffold_298-1575043694:265418..267899 | TCONS_00057816-exon-scaffold_298-1575043694:265418..267899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:265418..267899 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
