TCONS_00057830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057830
Unique NameTCONS_00057830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057830 ID=TCONS_00057830|Name=TCONS_00057830|organism=Clytia hemisphaerica|type=transcript|length=1061bp
CGCATCAAGCGCCTCCAATATGGTATAAATACAACAAAGTTTCTATGATA
GAAGCACACTACTTTCAAGAAGAGAAAGCCAAGTCAAAACGAAGAAAACA
AGATGatgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGC
CAAAGTCCCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCC
TGACCAAATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTT
TTGCTGCCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAAC
ATCAAATACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAG
CCAAGCTATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGAC
AATCAAGAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGT
TGCTCTTCACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGC
AAGAGGATGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAA
TCGGTCTGTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACA
ATCAGATGGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAAT
GAGAGCTTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTA
TCATGCATTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATT
CAGACAAAGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATT
TTCGGAAACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAA
CATGTGCTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGT
ACCAACAATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTA
ATTTATATACAAGATTGAACTAGAATAAAGATAGTTATAATATCAAGATA
ATGCTTTTTTTACTGTTGATCCCATTTAAATGCAATATTAGGGGTGAAAG
AAAGAGCCAGC
Run BLAST on NCBI

protein sequence of TCONS_00057830-protein

>TCONS_00057830-protein ID=TCONS_00057830-protein|Name=TCONS_00057830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MMKFFIFTLLAAYVVCQSPEEGDMVEGDIELDPDQMAAYMEQMEKAGNSF
AAIKSNLWKTNGRADNIKYYIDSQISGASSAISQAIADYQKYTCIRFSRQ
SRRPSGPHLFFTTGSGCSSPVGRMSRGNSIRLARGCWRKGTIIHEIGHSI
GLFHEQSRPDRDNFVTIRWENIKEQNKHNFNKMRASNWNKHDTNYDYDSI
MHYGSRYFTKNGGLTIQTKNSADQTRIGKRSGFSETDKIQINRMYCQGST
CADKDSRCSGWTSYCRTNNFVKTNCKKTCSLC
Run BLAST on NCBI

transcript from alignment at scaffold_299:112333..119689+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057830 ID=TCONS_00057830|Name=TCONS_00057830|organism=Clytia hemisphaerica|type=transcript|length=7357bp|location=Sequence derived from alignment at scaffold_299:112333..119689+ (Clytia hemisphaerica)
CGCATCAAGCGCCTCCAATATGGTATAAATACAACAAAGTTTCTATGATA
GAAGCACACTACTTTCAAGAAGAGAAAGCCAAGTCAAAACGAAGAAAACA
AGATGatgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGC
CAAAGTCCCGAAGAAGGTAAGAAATCAAAAGCCAGTTAAGGCACCTGCGT
AATCCCTATAATTTCGAACAACATTGAatcttaaattattttttaggttC
ATGATTTTCGAAGATTACATTTGGCTGGACATTTAGTAACGATTGCAAAA
AGAGCTGGaaaatagcaaattttattAAACTACCGGTCATACGATAGTCG
ATAAAAACGTTAAGAAATCTGAACAATATCCGAAGAAACGGCAATTTTTA
AGATCTTGACGagtctgaaaaatgaaataagaacaaataaggaaaaatag
aaaaataccaTAATCTTTACAAAATCTGTACGGCTAAGCCACGGTTATTC
AGACTAAAATATCATTCATACAACTGCAATCAGATCAATATGCTACTTTT
TTAAACTTATCTTTCTTAGGTGACATGGTTGAGGGAGACATTGAACTTGA
CCCTGACCAAATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACT
CTTTTGCTGCCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGAC
AACATCAAATACTACATTGATTCTCAAATCAGTAAGTCAGATAAGTATTA
TGGAATATCCTTATTGAATTAAATTGgcccagaaaaaaaccgtatacttc
ctgttgaggaggtccatccctctgtggctTGAAATATTGTAACCCCCAGG
AATTCTGgtcaatttcaggtttaaagccctctggaattctgtattttagt
aggatttaaaagctgccccattgaattccaggtatttttgacagattttt
gtatctccctatggaattccgccacatatcaaaccttgaCCCCTtagaac
ggaaatggacctcctcgaCAGGGGGATacggttttttctggaaagGCCCA
ATTATGGTCCATATTTTAACAGCCTCGTAACCAAGTTGCAGTAATCTTGG
CAAACTGCATTCTGGTAAAGGTTTTTATATGAACTTCTTTTAACAACGAT
TACATTTTTAATAAGCAAGTGTTTCATATCAGGctagcattatgcttagc
attttatattgtttttaaacgataaagccattgtttaggtaccaagaatt
aagcctgcatatgcttataaacgttcaGTTTATAGAAAGAAAAACACGTA
TTCATTAATTGTTTTCTAAACTTAAGGTGGAGCAAGCAGTGCTATCAGCC
AAGCTATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAA
TCAAGAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGGTA
AGACTTTTTATAAACTATATCCATAATCTACAGaatgacacccccttctc
acaggtccggtgggattttatcagtaAATGGGGGTACAAATAACGTACca
aaacttgatggggattgatattcccaagtTTTTTATAGCTGGGGACttga
attcctttgttttctagccagaaaattcagtggggatggaaaaaatagca
caatattttgcagtgaggatttggttatctggttattttcagcggggatg
AAACTTAGAGTATAATTCTCCACTGGGgaccatatttttgccaaattttc
cagtgggaagggttgtcagtgggtctgtgagaaggggtgtagtATGTAAA
TTCACCTGAGTGTTGAATAAGAAAgggttgaaagaaaaatttaaatccac
TTTAAATAGAGAAGAGTAAAACAGATCACTCTAATTTAATTTTACCTACA
ACTTTTGATAATCAACACCCTGAGTAAAGTATcatatttttgacataatt
tatTTGAACAACGCCCTGGTTAGGGTTGAACGAGTAACCATATccacaaa
aagaatttttttggttAGTTACGAATTTTTTCCCGACAATGTATCTTAGA
AATcttcaaagattcttttttatttaaaacacCTCATAGTTGCTCTTCAC
CAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAGGATGT
TGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGTCTGTT
CCACGAACAATCAAGGTACAAACCCTTTGTTTTCAAACGATACAGTGGAG
TATCTTCATTTCGAACCTTTATAacttgaatgtctccttaactcgaacaa
gttttatcgTCCTTTCGGTTAACTCTAACCTCACCCCttaacaaatttgt
gttccacGTGCGTGATAGAGTTATGAAAACGCCACTGTAACAGAGTTTAT
GTCCTTTGCTTATTCTAAAAACTTCAGCTGATCTTGCTGCATTTTGTTAC
GAATTCTGATCAGGACTTTCTAGCGGCTTTACATTGTACAGTTTCTTCAA
CTCGAACCTTTATAACTCGCATGTCTCAACTCANCTTTCTAGCGGCTTTA
CATTGTACAGTTTCTTCAACTCGAACCTTTATAACTCGCATGTCTCAACT
CAAAcaaagttttctcgtcccttcggttaacaatgccttataaacattta
aagaagaaattttgtgcTGTTCGATTAATGAAGACTGTAATACATTTTGG
TTATCTTTAATGAATTAAGACGCTGTCACTTGTTCTTCTTCTGGAACGCT
TTCTCGGTATGTAAATTACCATTTTATTGACGAGTCTCCTTAAATCTTTT
TAGACCTGACCGTGATAATTTTGTTACAATCAGATGGGAAAACATTAAAG
AACGTAAGTTTactattttttgtttcttgtttacTTTGGTTAGAATTAAT
TTcactaaaaagttaaaaaatcagCAGAAAATAAGGATTGGGTAAAAGTT
cggtagcctggatatccagactgtTCCTTAATTaattcacagtctagttt
attatatttttgtccaccgttacggtctggtttacctagctTGCCTGCAT
CCAAATCTGAGGATGAAATAGTGATTGGTCAGTACGAACATTGAACGTGA
TGTGAATGAGCCCATCCCgccttttaaagatttttgcaGGTTTTTTTGAT
ACGCCAAATCGCttcaatgaaaaataataatttcccCCTACCGCCCTCAA
GGTAAAACCCTCAAAGAAGTGCCCTCAATTAAttcttgttatattttttt
actaACTTTGTATAGAAAACAAACACAACTTCAACAAAATGAGAGCTTCC
AACTGGAACAAACATGACACCAATTATGATTACGACAGGTGACTATTATC
TTACTGACTACTATAGGCGAGGTCAAATGAGTTGTTGTTTTTATCAGTAA
ATAGCGTTAGACTAATAGCCTTCACCAGCCAACCGtgtgattttttattg
aaagtgaaatctgtaaaatatttttcttctcaaCTGATAATATTTAAAGG
CCATCCAAATATGCCATTTTTCAAATGCAaaggttaaattttcaaaaaaa
aagggaaaaaaaaaggaaaattgaagaaaaaagcGTGGCAGATGAGTTTT
GTTCGCCATTAAATATTTAATCCAACACACTTGCAGCGAGATAAAAACCT
TAACATTCCGAAGGTTACAACGTTTTTagtttttcatccaacatttcatt
CAACACTGGATAATAAAATGTTTGATGAAATATTGGACTGGTTTGCCCTG
GCTTTAATGTTTACATTCCCTGTTTCATCATAGTATCATGCATTACGGAT
CCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACAAAGAACTCT
GCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGAAACAGACAA
AATCCAAATCAACAGAATGTACTGCCAAGGTTAGTGATTATTTTTATtcc
taagtaagtaagtctacgACCGCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttatttcttaaaat
acagtaAGCCGAATGAGCCCATCCTGCCTTATAAAGATTTTTGCAGGTTT
TTTGATACGCCAAATCGCTTcaatgaaaagtaataatttccCCCTACCGC
CCTCAAGGTAAAACCCTCAAACAAGTGCCCTCAATTAAttcttgttatat
ttttttactaACTTTGTATAGAAAACAAACACAACTTCAACAAAATGAGA
GCTTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGGTGACT
ATTATCTTACTGACTACTATAGGCGAGGTCAAATGAGTTGTTGTTTTTAT
CAGTAAATAGCGTTAGACTAATAGCCTTCACCAGCCAACCGtgtgatttt
ttattgaaagtgaaatctgtaaaatatttttcttctcaaCTGATAATATT
TAAAGGCCATCCAAATATGCCATTTTTCAAATGCAaaggttaaattttca
aaaaaaaagggaaaaaaaaaggaaaattgaagaaaaaagcGTGGCAGATG
AGTTTTGTTCGCCATTAAATATTTAATCCAACACACTTGCAGCGAGATAA
AAACCTTAACATTCCGAAGGTTACAACGTTTTTagtttttcatccaacat
ttcattCAACACTGGATAATAAAATGTTTGATGAAATATTGGACTGGTTT
GCCCTGGCTTTAATGTTTACATTCCCTGTTTCATCATAGTATCATGCATT
ACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACAAAG
AACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGAAAC
AGACAAAATCCAAATCAACAGAATGTACTGCCAAGGTTAGTGATTATTTT
TATtcctaagtaagtaagtctacgACCGCACACGGAGGccacccgaaggc
tcctctttcgatagctatctacccgaaggtaggggagggctccactcttt
ctccctggattgctccacttacccttgacttttctcttaattactgagca
tcaagcagaaagGCATGAAGTACCATTTTAAGAATCTTTGGTATAACCCG
GCTGGATGTTGAACCTACAACCTTGctaaccgtagccggatgctctacca
ctgcactacggtcatTTTATTCCTCAAGTGTTTGTTAACCCCCAACCGTG
GTACAAAGACTTTGCGCACTCACGCGTCCGTTTTTTATGATGTTGTTCTT
TTTAAGTTTTCAGTAACAAGTAGAAAGGCTTTTGCAGCGTTGTGATTGCC
AATTTGTTAAAAGTTTCATCTCTATCTGTTGGCCGAGCAGActatacccc
tgtgtcacagacacgCTGGGACCCCGGCCCCACaggaaagattgacaaaa
atttcgtccccggtggggagataccttagaatttcagccccacttggaaa
ttaacttttaattcatcccctttcgaaattcaatgtttaaaaactgcAAT
TCGAAACCATTGCCACTGAGTTTTTAAACGTCGGGAATTTCTAtctccat
tgggatttcaatagagatttttatccccacagagaaaaaagttccaccgg
ggctgtgagacaggggtgttagacTATACACCTAGCTATTTCATAAGGTT
GTTCTAACGTTTATAACAttgacgttgtgaacattagataaacattgaaa
caacaTTATGTGTCAATTCGAACtctttattctttcaaaggatCAACATG
TGCTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCA
ACAATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAATTT
ATATACAAGATTGAACTAGAATAAAGATAGTTATAATATCAAGATAATGC
TTTTTTTACTGTTGATCCCATTTAAATGCAATATTAGGGGTGAAAGAAAG
AGCCAGC

Coding sequence (CDS) from alignment at scaffold_299:112333..119689+

>TCONS_00057830 ID=TCONS_00057830|Name=TCONS_00057830|organism=Clytia hemisphaerica|type=CDS|length=7641bp|location=Sequence derived from alignment at scaffold_299:112333..119689+ (Clytia hemisphaerica)
ATGatgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCA
AAGTCCCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTG
ACCAAATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTT
GCTGCCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACAT
CAAATACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCC
AAGCTATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAA
TCAAGAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTG
CTCTTCACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAA
GAGGATGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATC
GGTCTGTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAAT
CAGATGGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGA
GAGCTTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATC
ATGCATTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCA
GACAAAGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTT
CGGAAACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACA
TGTGCTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTAC
CAACAATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAA
TGatgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAA
AGTCCCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGA
CCAAATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTG
CTGCCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATC
AAATACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCA
AGCTATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAAT
CAAGAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGC
TCTTCACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAG
AGGATGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCG
GTCTGTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATC
AGATGGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAG
AGCTTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCA
TGCATTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAG
ACAAAGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTC
GGAAACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACAT
GTGCTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACC
AACAATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAAT
GatgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAA
GTCCCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGAC
CAAATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGC
TGCCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCA
AATACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAA
GCTATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATC
AAGAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCT
CTTCACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGA
GGATGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGG
TCTGTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCA
GATGGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGA
GCTTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCAT
GCATTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGA
CAAAGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCG
GAAACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATG
TGCTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCA
ACAATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAATG
atgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAAG
TCCCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGACC
AAATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGCT
GCCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCAA
ATACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAAG
CTATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATCA
AGAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCTC
TTCACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAG
GATGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGT
CTGTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCAG
ATGGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGAG
CTTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCATG
CATTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGAC
AAAGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGG
AAACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATGT
GCTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCAA
CAATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAATGa
tgaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAAGT
CCCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGACCA
AATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGCTG
CCATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCAAA
TACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAAGC
TATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATCAA
GAAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCTCT
TCACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAGG
ATGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGTC
TGTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCAGA
TGGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGAGC
TTCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCATGC
ATTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACA
AAGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGA
AACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATGTG
CTGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCAAC
AATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAATGat
gaagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAAGTC
CCGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGACCAA
ATGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGCTGC
CATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCAAAT
ACTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAAGCT
ATTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATCAAG
AAGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCTCTT
CACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAGGA
TGTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGTCT
GTTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCAGAT
GGGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGAGCT
TCCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCATGCA
TTACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACAA
AGAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGAA
ACAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATGTGC
TGACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCAACA
ATTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAATGatg
aagtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAAGTCC
CGAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGACCAAA
TGGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGCTGCC
ATCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCAAATA
CTACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAAGCTA
TTGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATCAAGA
AGACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCTCTTC
ACCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAGGAT
GTTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGTCTG
TTCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCAGATG
GGAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGAGCTT
CCAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCATGCAT
TACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACAAA
GAACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGAAA
CAGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATGTGCT
GACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCAACAA
TTTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAATGatga
agtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAAGTCCC
GAAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGACCAAAT
GGCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGCTGCCA
TCAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCAAATAC
TACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAAGCTAT
TGCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATCAAGAA
GACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCTCTTCA
CCAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAGGATG
TTGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGTCTGT
TCCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCAGATGG
GAAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGAGCTTC
CAACTGGAACAAACATGACACCAATTATGATTACGACAGTATCATGCATT
ACGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACAAAG
AACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGAAAC
AGACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATGTGCTG
ACAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCAACAAT
TTTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAAATGatgaa
gtttttcattttcactttacTGGCAGCTTATGTTGTCTGCCAAAGTCCCG
AAGAAGGTGACATGGTTGAGGGAGACATTGAACTTGACCCTGACCAAATG
GCCGCTTATATGGAACAAATGGAAAAAGCTGGAAACTCTTTTGCTGCCAT
CAAATCAAACTTATGGAAGACCAACGGAAGAGCTGACAACATCAAATACT
ACATTGATTCTCAAATCAGTGGAGCAAGCAGTGCTATCAGCCAAGCTATT
GCTGATTACCAAAAATACACTTGCATCAGATTCTCCAGACAATCAAGAAG
ACCAAGTGGACCTCATCTCTTCTTCACCACTGGATCAGGTTGCTCTTCAC
CAGTTGGTCGAATGAGCAGAGGAAACAGCATCCGTCTTGCAAGAGGATGT
TGGCGTAAAGGAACAATCATTCACGAAATTGGACATTCAATCGGTCTGTT
CCACGAACAATCAAGACCTGACCGTGATAATTTTGTTACAATCAGATGGG
AAAACATTAAAGAACAAAACAAACACAACTTCAACAAAATGAGAGCTTCC
AACTGGAACAAACATGACACCAATTATGATTACGACAGTATCATGCATTA
CGGATCCAGATACTTTACAAAGAACGGCGGATTAACCATTCAGACAAAGA
ACTCTGCGGATCAAACTCGAATTGGAAAGCGATCTGGATTTTCGGAAACA
GACAAAATCCAAATCAACAGAATGTACTGCCAAGgatCAACATGTGCTGA
CAAAGATTCCCGATGCAGTGGTTGGACATCCTATTGTCGTACCAACAATT
TTGTCAAAACAAATTGCAAGAAAACATGTTCGTTATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036454XLOC_036454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057830-exon-scaffold_299-1491911889:112333..112498TCONS_00057830-exon-scaffold_299-1491911889:112333..112498Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:112333..112498TCONS_00057830-exon-scaffold_299-1510915933:112333..112498Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:112333..112498TCONS_00057830-exon-scaffold_299-1575043694:112333..112498Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:112902..113063TCONS_00057830-exon-scaffold_299-1491911889:112902..113063Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:112902..113063TCONS_00057830-exon-scaffold_299-1510915933:112902..113063Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:112902..113063TCONS_00057830-exon-scaffold_299-1575043694:112902..113063Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:113659..113779TCONS_00057830-exon-scaffold_299-1491911889:113659..113779Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:113659..113779TCONS_00057830-exon-scaffold_299-1510915933:113659..113779Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:113659..113779TCONS_00057830-exon-scaffold_299-1575043694:113659..113779Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:114422..114547TCONS_00057830-exon-scaffold_299-1491911889:114422..114547Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:114422..114547TCONS_00057830-exon-scaffold_299-1510915933:114422..114547Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:114422..114547TCONS_00057830-exon-scaffold_299-1575043694:114422..114547Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:115136..115185TCONS_00057830-exon-scaffold_299-1491911889:115136..115185Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:115136..115185TCONS_00057830-exon-scaffold_299-1510915933:115136..115185Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:115136..115185TCONS_00057830-exon-scaffold_299-1575043694:115136..115185Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:115598..115645TCONS_00057830-exon-scaffold_299-1491911889:115598..115645Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:115598..115645TCONS_00057830-exon-scaffold_299-1510915933:115598..115645Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:115598..115645TCONS_00057830-exon-scaffold_299-1575043694:115598..115645Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:118002..118026TCONS_00057830-exon-scaffold_299-1491911889:118002..118026Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:118002..118026TCONS_00057830-exon-scaffold_299-1510915933:118002..118026Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:118002..118026TCONS_00057830-exon-scaffold_299-1575043694:118002..118026Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:118472..118617TCONS_00057830-exon-scaffold_299-1491911889:118472..118617Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:118472..118617TCONS_00057830-exon-scaffold_299-1510915933:118472..118617Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:118472..118617TCONS_00057830-exon-scaffold_299-1575043694:118472..118617Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1491911889:119473..119689TCONS_00057830-exon-scaffold_299-1491911889:119473..119689Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1510915933:119473..119689TCONS_00057830-exon-scaffold_299-1510915933:119473..119689Clytia hemisphaericaexon
TCONS_00057830-exon-scaffold_299-1575043694:119473..119689TCONS_00057830-exon-scaffold_299-1575043694:119473..119689Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057830-proteinTCONS_00057830-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:112333..119689 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95711	7.66225e-06	0.990099	0.415139	0.0561546	0.354993	1.44546	1.20286	0.842152	0	2.40468	2.46545e-09	632.324	576.654	1.04037	1.72547	487.845	683.421	3891.29	3656.48	3066.15	2961.39	947.707	1190.33	1360.29	1506.24	1.25614	0	0.138653	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR003582ShKT_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00057830 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.710e-25
Identity = 60/154 (38.96%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:  379 TCIRFSRQSRRPSGPHLFFTTGSGCSSPVGRMSRGNSIRLARGCWRKGTIIHEIGHSIGLFHEQSRPDRDNFVTIRWENIKEQNKHNFNKMRASNWNKHDTNYDYDSIMHYGSRYFTKNGGL-TIQTKNSADQTRIGKRSGFSETDKIQINRMY 837
            +C+ F       S  ++ F    GC S VG    G +I + +GC  K  I HEI H++G +HEQSR DRD++V I W+ I    +HNF+    S     +T YDY+S+MHY    F KN  + TI  K     + IG+R  FS  D  ++NRMY
Sbjct:  106 SCVDFKPYEGESS--YIIFQQFDGCWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMY 257
The following BLAST results are available for this feature:
BLAST of TCONS_00057830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A2.710e-2538.96Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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