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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057877 ID=TCONS_00057877|Name=TCONS_00057877|organism=Clytia hemisphaerica|type=transcript|length=3186bpRun BLAST on NCBI protein sequence of TCONS_00057877-protein >TCONS_00057877-protein ID=TCONS_00057877-protein|Name=TCONS_00057877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp MRRSVICHTNDVSDDSAIESDCNQPADRPSRYSIQSLLASDEPTLNLLEKRun BLAST on NCBI transcript from alignment at scaffold_30:25631..28816 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057877 ID=TCONS_00057877|Name=TCONS_00057877|organism=Clytia hemisphaerica|type=transcript|length=3186bp|location=Sequence derived from alignment at scaffold_30:25631..28816 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_30:25631..28816 >TCONS_00057877 ID=TCONS_00057877|Name=TCONS_00057877|organism=Clytia hemisphaerica|type=CDS|length=1329bp|location=Sequence derived from alignment at scaffold_30:25631..28816 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057877 vs. Swiss-Prot (Human)
Match: ZN358 (Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 PE=1 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 8.302e-35 Identity = 62/130 (47.69%), Postives = 81/130 (62.31%), Query Frame = -2
Query: 1269 CEYCQKTFTNQHSLSRHLRTHEGTRTHKCAKCSRSFYDQTSYLRHVRSHNGEKKHKCDQCSMAFNKRSALEVHFRTHTGERPFECKYCGKGFSISGNLHRHVLIHTGHRPYKCGKCPRAFNNPSHLARHI 1658
C C K F + L++HLRTH G R HKC C++ F ++ L+H+R+H GE+ + C QC AF + SAL H RTHT ERP+ C +CGK F S NL H+ IHTG RPY C C +AF S L +H+
Sbjct: 237 CPVCGKAFGHGSLLAQHLRTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQHQRTHTAERPYRCPHCGKAFGQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHL 366 HSP 2 Score: 125.946 bits (315), Expect = 8.382e-30 Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = -2
Query: 1272 LQVRSSSNEMQCEYCQKTFTNQHSLSRHLRTHEGTRTHKCAKCSRSFYDQTSYLRHVRSHNGEKKHKCDQCSMAFNKRSALEVHFRTHTGERPFECKYCGKGFSISGNLHRHVLIHTGHRPYKCGKCPRAFNNPSHLARH 1691
L+ +C C K F +L +HLRTH G R + C +C ++F ++ L+H R+H E+ ++C C AF + S L+ H R HTGERP+ C +C K F S L +H+ +H+G RPY+C C +AF S L +H
Sbjct: 254 LRTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQHQRTHTAERPYRCPHCGKAFGQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHLHVHSGERPYRCQLCGKAFGQASSLTKH 393 HSP 3 Score: 121.709 bits (304), Expect = 1.755e-28 Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = -2
Query: 1254 VRSSSNEMQCEYCQKTFTNQHSLSRHLRTHEGTRTHKCAKCSRSFYDQTSYLRHVRSHNGEKKHKCDQCSMAFNKRSALEVHFRTHTGERPFECKYCGKGFSISGNLHRHVLIHTGHRPYKCGKCPRAFNNPSHLARHINSFHT 1685
+ + + QC C K F + +L +H +H G + H C C ++F + +H+R+H G + HKC C+ F + SAL H RTHTGERP+ C CGK F S L +H HT RPY+C C +AF S+L H+ HT
Sbjct: 200 IHTGARPYQCAACGKAFGWRSTLLKHRSSHSGEKPHHCPVCGKAFGHGSLLAQHLRTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQHQRTHTAERPYRCPHCGKAFGQSSNLQHHLR-IHT 342 HSP 4 Score: 120.939 bits (302), Expect = 3.155e-28 Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = -2
Query: 1272 SSSNEMQCEYCQKTFTNQHSLSRHLRTHEGTRTHKCAKCSRSFYDQTSYLRHVRSHNGEKKHKCDQCSMAFNKRSALEVHFRTHTGERPFECKYCGKGFSISGNLHRHVLIHTGHRPYKCGKCPRAFNNPSHLARH 1679
S +C C K+F++ +L++H H G R ++CA C ++F +++ L+H SH+GEK H C C AF S L H RTH G RP +C C KGF L +H+ HTG RPY C +C +AF S L +H
Sbjct: 174 SGEKPYRCPDCGKSFSHGATLAQHRGIHTGARPYQCAACGKAFGWRSTLLKHRSSHSGEKPHHCPVCGKAFGHGSLLAQHLRTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQH 309 HSP 5 Score: 103.99 bits (258), Expect = 1.024e-22 Identity = 51/160 (31.87%), Postives = 75/160 (46.88%), Query Frame = -2
Query: 1200 SSSNEMQCEYCQKTFTNQHSLSRHLRTHEGTRTHKCAKCSRSFYDQTSYLRHVRSHNGEKKHKCDQCSMAFNKRSALEVHFRTHTGERPFECKYCGKGFSISGNLHRHVLIHTGHRPYKCGKCPRAFNNPSHLARHINSFHT*ASFAILLIDLSFEMSNA 1679
S C C + F LS+H RTH G + ++C C +SF + +H H G + ++C C AF RS L H +H+GE+P C CGK F L +H+ H G RP+KC C + F S L +H+ + + +F S+A
Sbjct: 146 SPPRPFSCPDCGRAFRRSSGLSQHRRTHSGEKPYRCPDCGKSFSHGATLAQHRGIHTGARPYQCAACGKAFGWRSTLLKHRSSHSGEKPHHCPVCGKAFGHGSLLAQHLRTHGGPRPHKCPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSA 305 HSP 6 Score: 98.9821 bits (245), Expect = 3.391e-21 Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = -2
Query: 1338 LSNLQVRSSSNEMQCEYCQKTFTNQHSLSRHLRTHEGTRTHKCAKCSRSFYDQTSYLRHVRSHNGEKKHKCDQCSMAFNKRSALEVHFRTHTGERPFECKYCGKGFSISGNLHRHVLIHTG 1700
L +L+ + C C K F +L +H RTH R ++C C ++F ++ H+R H GE+ + C CS AF + SAL H H+GERP+ C+ CGK F + +L +H +H G
Sbjct: 279 LKHLRTHTGERPYPCPQCGKAFGQSSALLQHQRTHTAERPYRCPHCGKAFGQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHLHVHSGERPYRCQLCGKAFGQASSLTKHKRVHEG 399 The following BLAST results are available for this feature:
BLAST of TCONS_00057877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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