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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057891 ID=TCONS_00057891|Name=TCONS_00057891|organism=Clytia hemisphaerica|type=transcript|length=1371bp
ttttgcaaaaatattttttggccTGTTGTTGTTGAAAAGGTGTTTCCATT
CATCCTTTAAGCCATAGATCTGGTCAGCCAGCCAATAGGTGGCCAAGAAA
GTCCAAAGAGGTGCCTTGTCCGTTCCAATCTTTAGGATGTCGCTGATTTG
GAGGGACGCGCATTGATGTGACAGCGAAAGCAAAGATAACCCGCCCATCT
CGAGGGGTAGAAAAATGGCTTGTCTGCTGACTGTCTCTTTCTTTGGCTTC
CAGATGTATGGAAACACTAATTTCATGAGAAGCATTTTGTGCCTCTCTGG
TGGGGTGAAGACTCGTCCCACGTGCCAGGCCTTGGATAGAACCAAAGTGT
TTATGATCCGGACTTTGCCTTGCAGAGAGATATTGCGATCTGCTAGGGAA
CCCACCCGTTTTTCAGCCTTTTCCAAAACTCTGTCCCAGTTTAGTTCGGC
TGATCTGGTTAAATTTGATGTAAAAATGATTCCCAGAATTTTGGTGTCGG
GTCGGTTCCACTTAATTGGGATGTCCGGGCAAAGGTGTTTTCCCAGTGGG
TGGTTGATGGCAATACCACGAGTTTTAGTTGGACAGAGTCGTGCGCCGGT
CCCGGATTCATATTTTTTCAACAGCTCGAAAAGTGGGTAAATGGAGTCCG
TGTCTCGAACGATTGGATTCGTGTCATCGACATATTGGATTCTTTTAGCC
ACTTTTCTAGAACCGGGTATGTCAGCACCCACAATGGCACTATCATTCTG
AATTGCTAGCCCGATGGTCTCGGCGACTAGGGCGTATAAGAACATTGACA
AAGGACACCCCTGACGAACCCCCCTTTTGATGGGAATGGGATCCGTCATA
TGGCCATTGACGTTGACCATAGATACTGGATTGGAATACAGAGGTCTTAT
TGCTTCGATGAATGTTTTTGGAATGCCAAGTCGTGTTAGAACCTGGAACA
TGAAGTCCCAATCCACACGGTCGAAGGCTTTTTCCTGATCCAGTGATATA
ATGTATAGTGGGGTACCTTTGTGATTTGAATAAGCTATCAACTCGCGCAC
AAGTAAAGTGTGGTCCTGAATATGTCTGCCAGGGACAGCACACACCTGTT
CTTCTGAGACAAGGTCAGTCATTACAGTCTTGAGGCGGTTGCTGAGAATT
TTAGAGTATATTTTGGCATCACAACATTGGAGTGAAACTGGTCTCCAGTT
GGTGAGGTCCAGTAAATCCCCTGTTTTTGGTAATAGGGAAATTACTGCCA
CCTGTTGTGAGTCAGACATGCGAGAGACAGTGGTGATGAATTGGAAAATT
TCCACCAGGATTGGTGAGATTTCTTCACAGAAAGTTTTATAGAAGTCGTA
TGGGAGGCCATCAATTCCCGG Run BLAST on NCBI protein sequence of TCONS_00057891-protein >TCONS_00057891-protein ID=TCONS_00057891-protein|Name=TCONS_00057891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
PGIDGLPYDFYKTFCEEISPILVEIFQFITTVSRMSDSQQVAVISLLPKT
GDLLDLTNWRPVSLQCCDAKIYSKILSNRLKTVMTDLVSEEQVCAVPGRH
IQDHTLLVRELIAYSNHKGTPLYIISLDQEKAFDRVDWDFMFQVLTRLGI
PKTFIEAIRPLYSNPVSMVNVNGHMTDPIPIKRGVRQGCPLSMFLYALVA
ETIGLAIQNDSAIVGADIPGSRKVAKRIQYVDDTNPIVRDTDSIYPLFEL
LKKYESGTGARLCPTKTRGIAINHPLGKHLCPDIPIKWNRPDTKILGIIF
TSNLTRSAELNWDRVLEKAEKRVGSLADRNISLQGKVRIINTLVLSKAWH
VGRVFTPPERHKMLLMKLVFPYIWKPKKETVSRQAIFLPLEMGGLSLLSL
SHQCASLQISDILKIGTDKAPLWTFLATYWLADQIYGLKDEWKHLFNNNR
PKNIFAK Run BLAST on NCBI transcript from alignment at scaffold_300:73363..74733 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057891 ID=TCONS_00057891|Name=TCONS_00057891|organism=Clytia hemisphaerica|type=transcript|length=1371bp|location=Sequence derived from alignment at scaffold_300:73363..74733 (Clytia hemisphaerica)
CCGGGAATTGATGGCCTCCCATACGACTTCTATAAAACTTTCTGTGAAGA
AATCTCACCAATCCTGGTGGAAATTTTCCAATTCATCACCACTGTCTCTC
GCATGTCTGACTCACAACAGGTGGCAGTAATTTCCCTATTACCAAAAACA
GGGGATTTACTGGACCTCACCAACTGGAGACCAGTTTCACTCCAATGTTG
TGATGCCAAAATATACTCTAAAATTCTCAGCAACCGCCTCAAGACTGTAA
TGACTGACCTTGTCTCAGAAGAACAGGTGTGTGCTGTCCCTGGCAGACAT
ATTCAGGACCACACTTTACTTGTGCGCGAGTTGATAGCTTATTCAAATCA
CAAAGGTACCCCACTATACATTATATCACTGGATCAGGAAAAAGCCTTCG
ACCGTGTGGATTGGGACTTCATGTTCCAGGTTCTAACACGACTTGGCATT
CCAAAAACATTCATCGAAGCAATAAGACCTCTGTATTCCAATCCAGTATC
TATGGTCAACGTCAATGGCCATATGACGGATCCCATTCCCATCAAAAGGG
GGGTTCGTCAGGGGTGTCCTTTGTCAATGTTCTTATACGCCCTAGTCGCC
GAGACCATCGGGCTAGCAATTCAGAATGATAGTGCCATTGTGGGTGCTGA
CATACCCGGTTCTAGAAAAGTGGCTAAAAGAATCCAATATGTCGATGACA
CGAATCCAATCGTTCGAGACACGGACTCCATTTACCCACTTTTCGAGCTG
TTGAAAAAATATGAATCCGGGACCGGCGCACGACTCTGTCCAACTAAAAC
TCGTGGTATTGCCATCAACCACCCACTGGGAAAACACCTTTGCCCGGACA
TCCCAATTAAGTGGAACCGACCCGACACCAAAATTCTGGGAATCATTTTT
ACATCAAATTTAACCAGATCAGCCGAACTAAACTGGGACAGAGTTTTGGA
AAAGGCTGAAAAACGGGTGGGTTCCCTAGCAGATCGCAATATCTCTCTGC
AAGGCAAAGTCCGGATCATAAACACTTTGGTTCTATCCAAGGCCTGGCAC
GTGGGACGAGTCTTCACCCCACCAGAGAGGCACAAAATGCTTCTCATGAA
ATTAGTGTTTCCATACATCTGGAAGCCAAAGAAAGAGACAGTCAGCAGAC
AAGCCATTTTTCTACCCCTCGAGATGGGCGGGTTATCTTTGCTTTCGCTG
TCACATCAATGCGCGTCCCTCCAAATCAGCGACATCCTAAAGATTGGAAC
GGACAAGGCACCTCTTTGGACTTTCTTGGCCACCTATTGGCTGGCTGACC
AGATCTATGGCTTAAAGGATGAATGGAAACACCTTTTCAACAACAACAgg
ccaaaaaatatttttgcaaaa Coding sequence (CDS) from alignment at scaffold_300:73363..74733 >TCONS_00057891 ID=TCONS_00057891|Name=TCONS_00057891|organism=Clytia hemisphaerica|type=CDS|length=1371bp|location=Sequence derived from alignment at scaffold_300:73363..74733 (Clytia hemisphaerica)
CCGGGAATTGATGGCCTCCCATACGACTTCTATAAAACTTTCTGTGAAGA
AATCTCACCAATCCTGGTGGAAATTTTCCAATTCATCACCACTGTCTCTC
GCATGTCTGACTCACAACAGGTGGCAGTAATTTCCCTATTACCAAAAACA
GGGGATTTACTGGACCTCACCAACTGGAGACCAGTTTCACTCCAATGTTG
TGATGCCAAAATATACTCTAAAATTCTCAGCAACCGCCTCAAGACTGTAA
TGACTGACCTTGTCTCAGAAGAACAGGTGTGTGCTGTCCCTGGCAGACAT
ATTCAGGACCACACTTTACTTGTGCGCGAGTTGATAGCTTATTCAAATCA
CAAAGGTACCCCACTATACATTATATCACTGGATCAGGAAAAAGCCTTCG
ACCGTGTGGATTGGGACTTCATGTTCCAGGTTCTAACACGACTTGGCATT
CCAAAAACATTCATCGAAGCAATAAGACCTCTGTATTCCAATCCAGTATC
TATGGTCAACGTCAATGGCCATATGACGGATCCCATTCCCATCAAAAGGG
GGGTTCGTCAGGGGTGTCCTTTGTCAATGTTCTTATACGCCCTAGTCGCC
GAGACCATCGGGCTAGCAATTCAGAATGATAGTGCCATTGTGGGTGCTGA
CATACCCGGTTCTAGAAAAGTGGCTAAAAGAATCCAATATGTCGATGACA
CGAATCCAATCGTTCGAGACACGGACTCCATTTACCCACTTTTCGAGCTG
TTGAAAAAATATGAATCCGGGACCGGCGCACGACTCTGTCCAACTAAAAC
TCGTGGTATTGCCATCAACCACCCACTGGGAAAACACCTTTGCCCGGACA
TCCCAATTAAGTGGAACCGACCCGACACCAAAATTCTGGGAATCATTTTT
ACATCAAATTTAACCAGATCAGCCGAACTAAACTGGGACAGAGTTTTGGA
AAAGGCTGAAAAACGGGTGGGTTCCCTAGCAGATCGCAATATCTCTCTGC
AAGGCAAAGTCCGGATCATAAACACTTTGGTTCTATCCAAGGCCTGGCAC
GTGGGACGAGTCTTCACCCCACCAGAGAGGCACAAAATGCTTCTCATGAA
ATTAGTGTTTCCATACATCTGGAAGCCAAAGAAAGAGACAGTCAGCAGAC
AAGCCATTTTTCTACCCCTCGAGATGGGCGGGTTATCTTTGCTTTCGCTG
TCACATCAATGCGCGTCCCTCCAAATCAGCGACATCCTAAAGATTGGAAC
GGACAAGGCACCTCTTTGGACTTTCTTGGCCACCTATTGGCTGGCTGACC
AGATCTATGGCTTAAAGGATGAATGGAAACACCTTTTCAACAACAACAgg
ccaaaaaatatttttgcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057891-exon-scaffold_300-1491911889:73363..74733 | TCONS_00057891-exon-scaffold_300-1491911889:73363..74733 | Clytia hemisphaerica | exon |
| TCONS_00057891-exon-scaffold_300-1510915933:73363..74733 | TCONS_00057891-exon-scaffold_300-1510915933:73363..74733 | Clytia hemisphaerica | exon |
| TCONS_00057891-exon-scaffold_300-1575043694:73363..74733 | TCONS_00057891-exon-scaffold_300-1575043694:73363..74733 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_300 | supercontig | scaffold_300:73363..74733 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00057891 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.303e-42 Identity = 118/407 (28.99%), Postives = 199/407 (48.89%), Query Frame = -1
Query: 190 PGIDGLPYDFYKTFCEEISPILVEIFQFITTVSRMSDSQQVAVISLLPKTG-DLLDLTNWRPVSLQCCDAKIYSKILSNRLKTVMTDLVSEEQVCAVPGRHIQDHTLLVRELIAYSNH-KGTPLYIISLDQEKAFDRVDWDFMFQVLTRLGIPKTFIEAIRPLYSNPVSMVNVNGHMTDPIPIKRGVRQGCPLSMFLYALVAETIGLAIQNDSAIVGADIPGSRKVAKRIQYVDD-----TNPIVRDTDSIYPLFELLKKYESGTGARLCPTKTRGIAINH--PLGKHLCPDIPIKWNRPDTKILGIIFTSNLTRSAELNWDRVLEKAEKRVGSLADRNISLQGKVRIINTLVLSKAWHVGRVFTPPERHKML----LMKLVFPYIWKPKKETVSRQAIFLPLEMGG 1371
PG DG +FY+ + EE+ P L+++FQ I + +S A I L+PK G D N+RP+SL DAKI +KIL+NR++ + L+ +QV +PG + +I + N K IIS+D EKAFD++ FM + L +LGI +++ IR +Y P + + +NG + P+K G RQGCPLS L+ +V E + AI+ + I G + G +V + + DD NPIV S L +L+ + +G ++ K++ N+ + ++P K LGI T ++ + N+ +L++ ++ + S G++ I+ +L K + R P + M L K +IW K+ +++ + + GG
Sbjct: 471 PGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQL-GKEEVKLSL-FADDMIVYLENPIV----SAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKV--IYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGG 869
The following BLAST results are available for this feature:
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