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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057897 ID=TCONS_00057897|Name=TCONS_00057897|organism=Clytia hemisphaerica|type=transcript|length=2073bp
GCAAAACGGACAAAGAAATGCCcgcacggcaattggcggctacagtCAAA
ATGGTGTACTGTATTTTGTTCATCTTTACATTTAATCATTATTCTTTTAT
GACGGAACGAAATATCAATTCAATTCTTTTCCTTtcaaagaaagttaaaa
aaaaaaacaacgaaacaaaataaaaaatatgtcaTCATGGTTACCTATAC
CGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCC
CACACTGTTCTCAAACATGCTCAAGTACCGACGCAAGTGACCGTTATTGA
GTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATG
GTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTG
GCTTTGGATGCTCTGTCTCTGCTCTCGGATATCGGCATTGACGACAAATT
TATCGGTGTACCGAAAAGTAACGACGCCGCTTCACGAAGATATATCTATT
ACAATGGACAAATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAG
TGGGGTCCACTCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACCTTT
TGTGAAGAAATCTGATTTGGATGATATGTCGGTCCATGAATTCTTTAGAA
GAAGATTCAACTGCGAAGAGATCGCCGACTATCTTGCCGACCCATTATGT
CACGGTATTTTCGGATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTT
TCCAATGCTGTTTGATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTG
CTCTTTTGTCCAAGGGTAACAAGCCACCAATTAGTTCATTGTCAAATAAA
GCCAAAGAACAACAATGGATGGCATGGTCGGTCAAAGGAGGCATGCAAAC
GTTGCCAGAATTATGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTC
ATCTTAATACAGAGTGCAAGAAACTAAAGATTCAATTCACTACGGATAGT
CGTAAAATTCATATCGAGACAAACAATGGAACATTCGAGGCTGATCACGT
GATCTCTACGCTTTCGGCTCCCGTACTTTTAGACATGATCGAAGATCAAA
CATTACGTCACCTGCTACAAGATATTCGGTATACTAATATGGCGGTCATG
ACTTTACAATATAGCGGAGAAAAAATTCCGCATAGTGGGTTTGGATATTT
AGTGCCGTCTAAAGAAAAACTGGATATTTTAGGAGTGACTTTCGATTCGC
ATATCTTTCCAGAGCATGCGTTAGAAAATAGTTCAACTGTGACGGTCATG
GCTGGTGGGCCTCGTTTCCATGAACTTTTTGGTGAAAAGGCAGACGAAAA
TACGGCGACGGAAATAGCCGTTCGTTCTGTTCGCGATACgttgaatttca
aaagtgaGCCAATCAAAAATGTGACAAAAATGCATCGTAACTGTATACCG
CAATACCATGTCGGTCATTacaaaacagctgaaaatatccGGAACTATTT
ATTGGAACAAAACTTACCGCTAAGCATCATGGGTAACATGTGGGGAGGTC
CGGGCGTGAATGACGTCATCGTGAATGCAAGAAATAACACGATGACGTGG
TTGACCAATAATCATCTTTGCTGAAAATTTATTTGTAgggatttaatttt
aatttacgcTGAATCTTTTGCCTTTTTTGTGTCTACATATGTTCgaatat
tttaaagattttctttttacataagtggttccgttttatatcagacacat
atttcatatcaggacagtgtcttgctaattgttatattatgctgatatat
tattattattattattattaaaaNGAGGCATGCAAACGTTGCCAGAATTA
TGGTCACAACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGA
GTGCAAGAAACTAAAGGTTGAATTCACTACGGATAGTCGTAAATTTCATA
TCGAGACAAACAATGGAACATTCGAGGCTGACNCGAATTTCTTTGGATGG
CTTTTCCAtgcttctttcaacttttctttgaaGCCTTTTATGGAAACAGC
AGCTACCACCTCAGACGGCAATT Run BLAST on NCBI transcript from alignment at scaffold_301:88104..93005+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057897 ID=TCONS_00057897|Name=TCONS_00057897|organism=Clytia hemisphaerica|type=transcript|length=4902bp|location=Sequence derived from alignment at scaffold_301:88104..93005+ (Clytia hemisphaerica)
GCAAAACGGACAAAGAAATGCCcgcacggcaattggcggctacagtCAAA
ATGGTGTACTGTATTTTGTTCATCTTTACATTTAATCATTATTCTTTTAT
GACGGAACGAAATATCAATTCAATTCTTTTCCTTtcaaagaaagttaaaa
aaaaaaacaacgaaacaaaataaaaaatatgtcaTCATGGTTACCTATAC
CGTTCCGCGTTGTCATACTGGGCGGAGGATTATCTGGTCTGGCGGCCGCC
CACACTGTTCTCAAACATGCTCAAGTACCGACGCAAGTGACCGTTATTGA
GTCACAAAATCGGTTTGGAGGCTGGTTAGAAAGCACAAGATTCAATGATG
GTACAGTATTTGAACATGGGCCAAGAAGTGGACGTTCTTATGGGAATGTG
GCTTTGGATGCTCTGTCTCTGGTGAGTTTTACCACAATTTTCTGATCCTG
TTAGCCTAATCTCCGAGCTATGTTATGAGGTTGCAGTTAtcaacaaaaat
acaaaattcaaTATACAAACAAGTATACTAAATAGGTTTTAatatagacg
atgctatcgttcgtttagagggtcagtaaacgcgaGAAAATATATGCGCA
Gagtcagggcgtcagggcggtatagttttggaacactgtaaacacctccg
cccCGAACTAaactcgttttcaaatttatcccgcttCCTAAAATTCCCTT
TTTCAATGATAGACGGTAGGATCGTCTAGTTTTAATatagataaataaat
aaataaatatttcattcaAATGTCTAAATCATTAGAGATAAGGCAAAGCC
AACTGTGTCATCATCAACAGTTTTAATATCACCTCGGAAACCTATCGTTT
GGCAAGTTAAAACATGCTGAGGGGTTTGTATTTCGCCACACATACAGTTG
GGATTATTGCTCAGACCTATCCGATGCATAAAACTACcatatcaaaattc
aataaGTTGTATCGAAGGAGTCATTATTATGAAGTTTCCATATCTTGAAC
ATTGTATAGGGAAAGCTCATCTTTCGTGTAGCGTTTTGTTGTGTTTACTT
TCATTTTGTTctcgttttgtttttttatacaaTTTATTTTAAGTCTTTTC
CATATTTTCAGCTCTCGGATATCGGCATTGACGACAAATTTATCGGTGTA
CCGAAAAGTAACGACGCCGCTTCACGAAGATATATCTATTACAATGGACA
AATCTTAGAATTACCCAGAGGACTGGCACTAGCTAAAAAGTGGGGTCCAC
TCCCTAAGTCTTTACTCGGTTTGATGATACGTGAACCTTTTGTGAAGAAA
TCTGATTTGGATGATATGTCGGTCCATGAATTCTTTAGAAGAAGATTCAA
CTGCGAAGAGGTTTGTAGTTCCAAAAGGATAAATATTTCATTGGGGCCcc
atttcatatttttgaaaatttactttATCCCCCCCCCTGATAGAAAAAGT
ATCAGGTATAAAAAATTTCACTAGAGTCCAGAGGTACCTGGGCAGAAAAG
GGGCACTTGGGGCACAGCGGTACTTAGTTGTACCAGTGGTACTTAGTTGT
TGTACCAGTGGTACTTATAGTTGTACCACTGTTGGGGGGGGGGTAAGTGT
AACTTTTAATGTTCATTTTTCAATCTAAGTGGTATAAACACTCATGTTAT
TCCCCAGCCCTCTTAGAACTCAAAAGAAATAATATGATACTTTGTATTCC
TTACAGATCGCCGACTATCTTGCCGACCCATTATGTCACGGTATTTTCGG
ATGGGACTCTAAACAGTTGAGTTTGCGATCATGCTTTCCAATGCTGTTTG
ATTACGAGAAAAATTATGGATCGGTCGTTAAAGGTGCTCTTTTGTCCAAG
GGTAAGTTTTCATTTATTCATAATATTCATGAGGTAATGTTCTCTACGGA
AAAACCTCGCGTTTTAGCCAGTaatggcaaatttaaactaggcaaaagtt
gtataaaatttgccattactggctaaaaccggggtctttccgtagaaaat
attacgtcatcAATATCATGAATTTGAAGCATCAAGCGTGGTAGAAAATA
TGTACGGTTAGgtcaaggatttattatagagactctggataaacatttta
ctttttattaatttcattttaaaaaagttctctagctctttctttttgta
cctTTGCAGGGAAAAAGTTTGATAGTACGGCTAGAATTGCTGATTGCATT
TGTGAAATCTGGCGTGAGAGAAATATCCTTAGACAAGAAAAATCCGAATG
CTTATAGAgtaacgaaattttcaattgggaatatctttccaaaactgtTG
CCAGAAGAGCTAAAAGTAACATACTTTAGACTTGGGTGTCTTAGCTCCAC
TGTGATGTGAAAATCTTTCGGAGGCACGTGCTGGCAAAGTGGTTTTTTAA
GGTTGAAGATTAAAACTTTCCGGTTTCAACATttaatttcttatacataa
caCGTCTTTTGTATCTTTCTCACAAATTAAAACGCCATAACGACATATAA
TTGGCAATTAGatagaatctgactctcacaggaaagtctCCTTTGGGagt
tggatgagtgattttcgataaaatatgcaattaaaatgtttcgaaaaatc
atttaatgagggaaggagagtgaacaattaTATCATTACTGTGGATATAG
CTAGAACttgagaaatcagcaaaaatcaggtACTTGTATCATGAAATGTC
ATGAAGGTAATACAGATATATTTCTTATTACCTCTATGCTTATCCAGTAT
ATAATAATTCCTTGGTTAGGTCACGACTTGGTGTTTGTTGAGAAAGAATC
GTTCCCTTTAAGACAATAGGGACCTTTAGCATCTAGGACGGCAGATTTAT
AGATTGTGCGCATATCTGGATGAGTTTTTGATTTAACAAAATATCCGAAA
GATACTTGCAGTGTAATAAAAAccttaatcgcacgatgggttattttttc
ttatttggcacgccctcaaagagagcaattaatcgttgattgcatcctgt
agagagtaattaatcgttaatcacactcttcaatgctgcgccaatgttta
caaaaatgattttaatgttttttcttacatttctaatgcatcgaacgttt
taacNTTTGGATATTTAGTGCCGTCTAAAGAAAAACTGGATATTTTAGGA
GTGACTTTCGATTCGCATATCTTTCCAGAGCATGCGTTAGAAAATAGTTC
AACTGTGACGGTCATGGCTGGTGGGCCTCGTTTCCATGAACTTTTTGGTG
AAAAGGCAGACGAAAATACGGCGACGGAAATAGCCGTTCGTTCTGTTCGC
GATACgttgaatttcaaaagtgaGCCAATCAAAAATGTGACAAAAATGCA
TCGACACTGTATACCGCAATACCATGTCGGTCATTacaaaacagctgaaa
atatccAGAACTATTTATTGGAACANtgaattttcctcgtcctttcggac
tcggaaaattaataacaaaaaaatcactcgtgcaattatattcgaattgc
actcgttatcatgtgattacatatactaatgaTACTATTTGacacaaaat
ccaaaaaattatctaagcaacattttttttttgcttctcaattttgaatt
ttaattcttcGTTAAAgtcaaacttattttttttcatttgacagGTAACA
AGCCACCAATTAGTTCATTGTCAAATAAAGCCAAAGAACAACAATGGATG
GCATGGTCGGTCAAAGGAGGCATGCAAACGTTGCCAGAATTATGGTCACA
ACATTTGATTGAGAAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGA
AACTAAAGATTCAATTCACTACGGATAGTCGTAAAATTCATATCGAGACA
AACAATGGAACATTCGAGGCTGATCACGTGATCTCTACGCTTTCGGCTCC
CGTACTTTTAGACATGATCGAAGATCAAACATTACGTCACCTGCTACAAG
ATATTCGGTATACTAATATGGCGGTCATGACTTTACAATATAGCGGAGAA
AAAATTCCGCATAGTGGGTTTGGATATTTAGTGCCGTCTAAAGAAAAACT
GGATATTTTAGGAGTGACTTTCGATTCGCATATCTTTCCAGAGCATGCGT
TAGAAAATAGTTCAACTGTGACGGTCATGGCTGGTGGGCCTCGTTTCCAT
GAACTTTTTGGTGAAAAGGCAGACGAAAATACGGCGACGGAAATAGCCGT
TCGTTCTGTTCGCGATACgttgaatttcaaaagtgaGCCAATCAAAAATG
TGACAAAAATGCATCGTAACTGTATACCGCAATACCATGTCGGTCATTac
aaaacagctgaaaatatccGGAACTATTTATTGGAACAAAACTTACCGCT
AAGCATCATGGGTAACATGTGGGGAGGTCCGGGCGTGAATGACGTCATCG
TGAATGCAAGAAATAACACGATGACGTGGTTGACCAATAATCATCTTTGC
TGAAAATTTATTTGTAgggatttaattttaatttacgcTGAATCTTTTGC
CTTTTTTGTGTCTACATATGTTCgaatattttaaagattttctttttaca
taagtggttccgttttatatcagacacatatttcatatcaggacagtgtc
ttgctaattgttatattatgctgatatattattattattattattattaa
aaNGAGGCATGCAAACGTTGCCAGAATTATGGTCACAACATTTGATTGAG
AAAGGCCTGCAATGTCATCTTAATACAGAGTGCAAGAAACTAAAGGTTGA
ATTCACTACGGATAGTCGTAAATTTCATATCGAGACAAACAATGGAACAT
TCGAGGCTGACNCGAATTTCTTTGGATGGCTTTTCCAtgcttctttcaac
ttttctttgaaGCCTTTTATGGAAACAGCAGCTACCACCTCAGACGGCAA
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057897-exon-scaffold_301-1491911889:88104..88524 | TCONS_00057897-exon-scaffold_301-1491911889:88104..88524 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1510915933:88104..88524 | TCONS_00057897-exon-scaffold_301-1510915933:88104..88524 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1575043694:88104..88524 | TCONS_00057897-exon-scaffold_301-1575043694:88104..88524 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1491911889:89215..89463 | TCONS_00057897-exon-scaffold_301-1491911889:89215..89463 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1510915933:89215..89463 | TCONS_00057897-exon-scaffold_301-1510915933:89215..89463 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1575043694:89215..89463 | TCONS_00057897-exon-scaffold_301-1575043694:89215..89463 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1491911889:89810..89954 | TCONS_00057897-exon-scaffold_301-1491911889:89810..89954 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1510915933:89810..89954 | TCONS_00057897-exon-scaffold_301-1510915933:89810..89954 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1575043694:89810..89954 | TCONS_00057897-exon-scaffold_301-1575043694:89810..89954 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1491911889:91748..93005 | TCONS_00057897-exon-scaffold_301-1491911889:91748..93005 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1510915933:91748..93005 | TCONS_00057897-exon-scaffold_301-1510915933:91748..93005 | Clytia hemisphaerica | exon |
| TCONS_00057897-exon-scaffold_301-1575043694:91748..93005 | TCONS_00057897-exon-scaffold_301-1575043694:91748..93005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_301 | supercontig | scaffold_301:88104..93005 + |
Blast
BLAST of TCONS_00057897 vs. Swiss-Prot (Human)
Match: PPOX (Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 3.414e-83 Identity = 162/464 (34.91%), Postives = 239/464 (51.51%), Query Frame = 2
Query: 260 LKHAQVPTQVTVIESQNRFGGWLESTRFNDGTVFEHGPRSGRSYGNVALDALSLLSDIGIDDKFIGVPKSNDAASRRYIYYNGQILELPRGL-ALAKKWGPLPKSLLGLMIREPFVKKSDLDDMSVHEFFRRRFNCEEIADYLADPLCHGIFGWDSKQLSLRSCFPMLFDYEKNYGSVVKGALLSKGNKP-PISSLSNKAKEQQWMAWSVKGGMQTLPELWSQHLIEKGLQCHLNTECKKLKIQFTTDSRKIHIETNNGTFEADHVISTLSAPVLLDMI--EDQTLRHLLQDIRYTNMAVMTLQYSGEKIPHSGFGYLVPSKEKLDILGVTFDSHIFPEH-ALENSSTVTVMAGGPRF-----------HELFGEKADENTATEIAVRSVRDTLNFKSEPIKNVTKMHRNCIPQYHVGHYKTAENIRNYLLEQNLPLSIMGNMWGGPGVNDVIVNARNNTMTWL 1603
L A P +V ++ES R GGW+ S R +G +FE GPR R G + L L+S++G+D + + V + AA R++Y G + LP GL L + P K L +RE + D +VH F +RR E+A D LC G+F +S++LS+RSCFP LF E+ + S++ G LL G P P S+L +A ++W WS++GG++ LP+ HL +G+ L +Q + + + + EADHVIS + A VL +++ E L L I ++AV+ LQY G +P GFG+LVPS E +LG+ +DS FPE VTVM GG ELF ++A E AT+ L K P + +H+NCIPQY +GH++ E+ R +L LPL++ G + G VND I + R ++ L
Sbjct: 21 LSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLG-PEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG---RWKVSLRDSSLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQ---------LGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIESGRQAAVSVL 471
The following BLAST results are available for this feature:
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