TCONS_00057916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057916
Unique NameTCONS_00057916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057916 ID=TCONS_00057916|Name=TCONS_00057916|organism=Clytia hemisphaerica|type=transcript|length=1992bp
CCCAGGGCTAGAGGCCAAGCCAAGAGCGAAATGGATGCTTCTGTTGTGAC
TCCAATGATCACAGAAACATCAACGAATGACGAGGTTTATAATTTCATAC
AATTACAACACACTTCAAATGAAGCTTCACAACCATCAGAAATGGAATCA
ACAGTTCAAACAGAAACTATGGAACACGATTCTCAAGTGATCGAACCTCG
GAAAGAAATAGGAACTACTGCTGTAGACCAAACGAATCAATTCGATCAAA
ACATCACACATATGACACAAACTTTTGAACCTGTGAATTTGTACGTGTGT
GACAAATGCAATCGAACATTCAAACAAAAATCACGATACGAGCGTCATAT
ACAGAACCATCCTAGTGAGAAACATTATCTTTGTGAAACGTGTCACAAGA
CCTTCACAAGAGTGTCACACTTAGAGAAACACATTAAAACGCACACTGAA
GAGAGAAGTCATTTATGCGAGGTGTGTGGCGCCGCTTTCATTCTACCACA
CCACTTGGTAAGACATATGCTCGTTCACTCAGGTGAGAGACCTTATCAAT
GTGAAGTATGTAATAAAACGTTCACACGGAAAGCTGGACTCACGCAACAT
CAACATGTTCATACCGGTCTACGTCCTTACGGTTGTGAGCATGAGAACTG
TGGTCGATATTTTACTGATAAGACTACATTACGTCGACACATGATGACGC
ACTCTAGTGAAAAACCATTCGTTTGCAAAGAATGTGATAAAACTTTTCGG
ACAAAATCTGCATGTCGGAAGCATTATTTGCGACATTTTAAAGATGGTGC
ATCATATAAATGCGGTGTTTGCGAAGAAATGTTTAAGGATGAAAGAGAGT
ATAAAATGCATTTAGAAACACACGACGAGAAGCAACGTACCGGTGCTCAC
CGATGTGGTTTCTGTTTGCGTGTTTTCAAAAGTCAAGAAGATCTGAATGC
TCATGTACCGTTACACGAATCGGGTCTTCAATACACATGCGAGCGATGCT
CTGCCAGGTTTTTCACACAAGTTGACTTCTTGAAACACACAGCCAAACAT
TTTGAAGAATCTACTTTAGCTGTTGAGCAAAATATACAGGAACAACACCA
CGTATCTACCGCAACCAATGCTCAACCAAAGGAGAACGAAGTACCACAAC
AAAAAGACGCATTACCGAATCCACAGAATACTCTCCAAGAGGGTaacgaa
aatgtaaacaaactactGGTCGTCTTACAGCTTCCACAGTCTGCATCCAA
CCTCAGAAACGAACAAGGTGCGCTACAAGTGGACAGCATTCAACAACTTC
TCGGTACCGTAAGAATTGACAAGTTAGTTGTCACCACTGATCCCATTTCT
AATTCATCACAAGCAGTGGCTTTACAATTATCACAATCTCAACAACAAAG
TATTCAGCAAATTCTACAAACAACCCATATCAGACGACAAAATCCACCTA
TTTCAACTCTGGAAAGTCTCAACAAAGCCCCACTAAATGCTCTTGAGACA
CTTACATCCACCTTGAACGAGGCTGCAACGTTTCCTGATTTGACATCACA
CGATACGATGGACGCTCCCGATCTTTCACAGCACGTTCAGTCATCCTTTG
TCCTCAAGTCACTCTCACATCAACCGCCCCCACCGCCGGAAAGCAAATCA
GTCTCTCAATATCTCATTGTACCACCAACAGGCCCTGGGTTTACACCAAT
TGTTAATTCGAAGATCAAAATTATCCACAAACCGCCAGAACCGATCGGAA
ATAACTCTGTTTTCACTAGACCACCTCCGAATCTTCTGCAAAACAATGAA
CTGGTCCCAACCCATCCTTTAGAACTGATCGTAAATGATGAAGATGTTCC
AGAAACAGGTGTCAAACAAGGGGATTCTTTTGAACCAAATACGACTTCCT
TAACCATGGGTTCTCTTCATCAGACTCCTGAAAATTCAAATACAGAAGAG
AAAGTCAGGAATTCATCCTCGTCCAATTATTTTCAGCATTNa
Run BLAST on NCBI

protein sequence of TCONS_00057916-protein

>TCONS_00057916-protein ID=TCONS_00057916-protein|Name=TCONS_00057916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=664bp
PRARGQAKSEMDASVVTPMITETSTNDEVYNFIQLQHTSNEASQPSEMES
TVQTETMEHDSQVIEPRKEIGTTAVDQTNQFDQNITHMTQTFEPVNLYVC
DKCNRTFKQKSRYERHIQNHPSEKHYLCETCHKTFTRVSHLEKHIKTHTE
ERSHLCEVCGAAFILPHHLVRHMLVHSGERPYQCEVCNKTFTRKAGLTQH
QHVHTGLRPYGCEHENCGRYFTDKTTLRRHMMTHSSEKPFVCKECDKTFR
TKSACRKHYLRHFKDGASYKCGVCEEMFKDEREYKMHLETHDEKQRTGAH
RCGFCLRVFKSQEDLNAHVPLHESGLQYTCERCSARFFTQVDFLKHTAKH
FEESTLAVEQNIQEQHHVSTATNAQPKENEVPQQKDALPNPQNTLQEGNE
NVNKLLVVLQLPQSASNLRNEQGALQVDSIQQLLGTVRIDKLVVTTDPIS
NSSQAVALQLSQSQQQSIQQILQTTHIRRQNPPISTLESLNKAPLNALET
LTSTLNEAATFPDLTSHDTMDAPDLSQHVQSSFVLKSLSHQPPPPPESKS
VSQYLIVPPTGPGFTPIVNSKIKIIHKPPEPIGNNSVFTRPPPNLLQNNE
LVPTHPLELIVNDEDVPETGVKQGDSFEPNTTSLTMGSLHQTPENSNTEE
KVRNSSSSNYFQHX
Run BLAST on NCBI

transcript from alignment at scaffold_302:71169..76256+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057916 ID=TCONS_00057916|Name=TCONS_00057916|organism=Clytia hemisphaerica|type=transcript|length=5088bp|location=Sequence derived from alignment at scaffold_302:71169..76256+ (Clytia hemisphaerica)
CCCAGGGCTAGAGGCCAAGCCAAGGTAaggtttttctgttttcttaacga tttttatctattttggtCACCTTTTACTACAAACATAGTTACTAATCTTT GAAATGTAAGAGCTGTAACCTTTACTTTTACTCCATTTTTTATTATTACC TGATTTTATCAACCTTTAAAATCTTTGTCTTTTGGAAGTCACTCCTTGCT CTCCCAGGGTTCATGGGCAATTCGTAGAAATACTGGTCAAAATCGAAAGT GTACTTCCTTCCCAAGTCTCTGAAGGCATACTCCAGCTGGAAATGGCGAT ATCTATCCTTAgcacaaaaaagacaaaaagttaGCTCCATGGTTAGCTGG ATAAGGTTTAATGTTACTGAAAATGTAGTCGAAACTGTTTGTTTCTGTTC ATTATCTCAAAATTTGGTGGTCTCAGAATTTCGATAATTTTAATATTCAG atataaatgtttttttcttttataagcataacatttataagcatatacag gctcagtttttgataccaaaacaaaggctctatttaactGTTGTTaaaag ttttgatgttttttaaagATCAGTAAATTTCGCAACGCTCGCAACGGATT TTTCCACTTGAGTAGTGCTCCGTTCGATCGCAACGTTCGCAACGCACTTT TCTccatgaaatatttcaaaacctttaaatccTTCAAATACAGCCCAATT AGGATACGTTTTGCGAATCTTGGTCAAAAATATGAGAGAATTTAGCCCTG TGAATTGCCAATTATGCCGTGATTATGCCCCAGTAAGGCTCAATACTTTT ACAAAGAATGGTTTTCTCAAAAGTGTTTAAATTTCTTCCAGCTGGTAAAT ATTTGCAAATTTTTGGATCGTGGGTAATGTACTTCACCAACACGGATCTC TCCCATGTTTTTCATAGCAAGTTTGGACAGCAAAAGAGTACCATTTTCTT TCTTTTCGTCTCAAGACCTCTCCTATAGATGAAAATTGAATTTTAGATTC GTTAAGAATACGGAATCTTTTTTGTACGACGAAAACTGgtcaaatttgac aaaaagaattaaagaaaaaatgtccTTGTCTCGGTCCTTTTCTCAGTCCt gtatatttttaatttttttgataatttttgaaaaaatcgacTGAAGATTT TGCAATTGTGCACCATTACGAATTGGCATCTTTTCCCAAAATGAAGGGTC TctgttgaattatttttttcactttcaattttttaactggATTATCCACT GGGGTGGATtacagtagcggcctggcttaattttcttggtggtgcaaact atgaaattggcgcccctggtatttttgtccttatttgcgccctccatcat taagtgaaaatattaaACTGTAACAGCAGTGActggttgaaagtaacgcc cctattcttttaaatataaattttataccTGGTAAGTCGATTTGgtctat atttttgctttctaaaactcttatcaaaaaaaattaccggataatcttta aacttttgcgtcgctggtcttactttactgtctattaaagatcaatggct gaaagaggcaaAAAATTCACAAGTTGGGAGGAAGGGTTCCTTGTAATttt gcgccgcaggcaaaaaaatttggtgtaagaaaggtcaaacagcttaaaag atcttctaaaacggagaaagttagtcagtatAAGACCACAAAAGCCACAG CGAgaatcaacaagttttgatcattttggcaatctctcattttggagGTG AGCATTcactttaacccctggtggatacacaacacttctcttacttctga ttcaattatattgatagaagttttgaaaaaattctccaaaaattcaagag aaatGATGTAAGAAGGTAAAgtaaagcgccgcaggcgaaaaaaattaaca ttgtactcatagaaggcgctataaacatgccgaagggcgccaaattgccc aattaaacatcaaNGtatatttttaatctttttgataatttttgaaaaaa tcgacTGAAGATTTTGCAATTGTGCACCATTACGAATTGGCATCTTTTCC CAAAATGAAGGGTCTTAAAAAGAATAATCTctgttgaattatttttttca ctttcaattttttaactggATTATCCACTGGGGTGGATTATCGATATAGG GGTGTAAACAACGCACGATAAACAATTCTAAATCCCTTTATTTTGACCTG ACAGCGAAATGGATGCTTCTGTTGTGACTCCAATGATCACAGAAACATCA ACGAATGACGAGGTTTATAATTTCATANTGTGACTCCAATGATCACAGAA ACATCAACGAATGACGAGGTTTATAATTTCATACAATTACAACACACTTC AAATGAAGCTTCACAACCATCAGAAATGGAATCAACAGTTCAAACAGAAA CTATGGAACACGATTCTCAAGTGATCGAACCTCGGAAAGAAATAGGAACT ACTGCTGTAGACCAAACGAATCAATTCGATCAAAACATCACACATATGAC ACAAAGTAAGTTCTATTTTAAAATAGTATCCTGTCATTTGGCTGAATTCA AAAGTACCTTTTGCTTTTAAATTGAACTGTGATACATGGAGTGTATATGA TACATACCTATGACTTTATCCTGCAAAATCTTACTTTaacacaccccttc tcacagacccggtaggattgggatttatattcccatgttttttttatggc tggaaatttaaattccattgctttcgagtcagaaaattcagtgggcatag cgtcagccccccccccttagttTTGAGCCCCCCCCCCCCCCAAGGCTTTC GACCCTCGACCATTTGTTCCACAAAAAAAAGGGTTATTCAATGTAAATTG TGTTGCAGTTCGAAGGTTAAGATAAAACATTTTGTTAACTAAATAAAAAC ATTGCGTCGCAGAGGAAAAATTTTCAGCTTCATGAGCTTTAAATTTGAGT AATTGAATCCAACCATTTTAAAGATGAAGTTTTCAGCCCCCACGTTAAAT GATGAGATTTCAGCTCCCCCAAGTACATAGGACCCCTCGAATATTTGAAA CATCTTCAGCCACCCTTTTTTGGCTTTTTGGAGGGTGTGACCCCCCCCCC CAGCTAGCATgggggctgacgctatggtggggatggaaaaatagcaATAT TTGGTAGTGAAGATTTGGTTATTTGATTACTTTCAACAGGGGCAAAAATT GTAGCATGATTTTCCAGTAGGGAcaatattttgtccattttttccagTCG AAGGGGTTTCCCCCGTGTCTGTGGAGaagaaataaaacaattttctaaTG GGTAGGAAGTCCTACCGATTATGTGACAAAAAGCTTTATAACTAAGTCTC TGTCTTTAATCTTTTAGCTTTTGAACCTGTGAATTTGTACGTGTGTGACA AATGCAATCGAACATTCAAACAAAAATCACGATACGAGCGTCATATACAG AACCATCCTAGTGAGAAACATTATCTTTGTGAAACGTGTCACAAGACCTT CACAAGAGTGTCACACTTAGAGAAACACATTAAAACGCACACTGAAGAGA GAAGTCATTTATGCGAGGTGTGTGGCGCCGCTTTCATTCTACCACACCAC TTGGTAAGACATATGCTCGTTCACTCAGGTGAGAGACCTTATCAATGTGA AGTATGTAATAAAACGTTCACACGGAAAGCTGGACTCACGCAACATCAAC ATGTTCATACCGGTCTACGTCCTTACGGTTGTGAGCATGAGAACTGTGGT CGATATTTTACTGATAAGACTACATTACGTCGACACATGATGACGCACTC TAGTGAAAAACCATTCGTTTGCAAAGAATGTGATAAAACTTTTCGGACAA AATCTGCATGTCGGAAGCATTATTTGCGACATTTTAAAGATGGTGCATCA TATAAATGCGGTGTTTGCGAAGAAATGTTTAAGGATGAAAGAGAGTATAA AATGCATTTAGAAACACACGACGAGAAGCAACGTACCGGTGCTCACCGAT GTGGTTTCTGTTTGCGTGTTTTCAAAAGTCAAGAAGATCTGAATGCTCAT GTACCGTTACACGAATCGGGTCTTCAATACACATGCGAGCGATGCTCTGC CAGGTTTTTCACACAAGTTGACTTCTTGAAACACACAGCCAAACATTTTG AAGAATCTACTTTAGCTGTTGAGCAAAATATACAGGAACAACACCACGTA TCTACCGCAACCAATGCTCAACCAAAGGAGAACGAAGTACCACAACAAAA AGACGCATTACCGAATCCACAGAATACTCTCCAAGAGGGTaacgaaaatg taaacaaactactGGTCGTCTTACAGCTTCCACAGTCTGCATCCAACCTC AGAAACGAACAAGGTGCGCTACAAGTGGACAGCATTCAACAACTTCTCGG TACCGTAAGAATTGACAAGTTAGTTGTCACCACTGATCCCATTTCTAATT CATCACAAGCAGTGGCTTTACAATTATCACAATCTCAACAACAAAGTATT CAGCAAATTCTACAAACAACCCATATCAGACGACAAAATCCACCTATTTC AACTCTGGAAAGTCTCAACAAAGCCCCACTAAATGCTCTTGAGACACTTA CATCCACCTTGAACGAGGCTGCAACGTTTCCTGATTTGACATCACACGAT ACGATGGACGCTCCCGATCTTTCACAGCACGTTCAGTCATCCTTTGTCCT CAAGTCACTCTCACATCAACCGCCCCCACCGCCGGAAAGCAAATCAGTCT CTCAATATCTCATTGTACCACCAACAGGCCCTGGGTTTACACCAATTGTT AATTCGAAGATCAAAATTATCCACAAACCGCCAGAACCGATCGGAAATAA CTCTGTTTTCACTAGACCACCTCCGAATCTTCTGCAAAACAATGAACTGG TCCCAACCCATCCTTTAGAACTGATCGTAAATGATGAAGATGTTCCAGAA ACAGGTGTCAAACAAGGGGATTCTTTTGAACCAAATACGACTTCCTTAAC CATGGGTTCTCTTCATCAGACTCCTGAAAATTCAAATACAGAAGAGAAAG TCAGGAATTCATCCTCGTCCAATTATTTTCAGCATTNa

Coding sequence (CDS) from alignment at scaffold_302:71169..76256+

>TCONS_00057916 ID=TCONS_00057916|Name=TCONS_00057916|organism=Clytia hemisphaerica|type=CDS|length=7968bp|location=Sequence derived from alignment at scaffold_302:71169..76256+ (Clytia hemisphaerica)
CCCAGGGCTAGAGGCCAAGCCAAGAGCGAAATGGATGCTTCTGTTGTGAC
TCCAATGATCACAGAAACATCAACGAATGACGAGGTTTATAATTTCATAC
AATTACAACACACTTCAAATGAAGCTTCACAACCATCAGAAATGGAATCA
ACAGTTCAAACAGAAACTATGGAACACGATTCTCAAGTGATCGAACCTCG
GAAAGAAATAGGAACTACTGCTGTAGACCAAACGAATCAATTCGATCAAA
ACATCACACATATGACACAAACTTTTGAACCTGTGAATTTGTACGTGTGT
GACAAATGCAATCGAACATTCAAACAAAAATCACGATACGAGCGTCATAT
ACAGAACCATCCTAGTGAGAAACATTATCTTTGTGAAACGTGTCACAAGA
CCTTCACAAGAGTGTCACACTTAGAGAAACACATTAAAACGCACACTGAA
GAGAGAAGTCATTTATGCGAGGTGTGTGGCGCCGCTTTCATTCTACCACA
CCACTTGGTAAGACATATGCTCGTTCACTCAGGTGAGAGACCTTATCAAT
GTGAAGTATGTAATAAAACGTTCACACGGAAAGCTGGACTCACGCAACAT
CAACATGTTCATACCGGTCTACGTCCTTACGGTTGTGAGCATGAGAACTG
TGGTCGATATTTTACTGATAAGACTACATTACGTCGACACATGATGACGC
ACTCTAGTGAAAAACCATTCGTTTGCAAAGAATGTGATAAAACTTTTCGG
ACAAAATCTGCATGTCGGAAGCATTATTTGCGACATTTTAAAGATGGTGC
ATCATATAAATGCGGTGTTTGCGAAGAAATGTTTAAGGATGAAAGAGAGT
ATAAAATGCATTTAGAAACACACGACGAGAAGCAACGTACCGGTGCTCAC
CGATGTGGTTTCTGTTTGCGTGTTTTCAAAAGTCAAGAAGATCTGAATGC
TCATGTACCGTTACACGAATCGGGTCTTCAATACACATGCGAGCGATGCT
CTGCCAGGTTTTTCACACAAGTTGACTTCTTGAAACACACAGCCAAACAT
TTTGAAGAATCTACTTTAGCTGTTGAGCAAAATATACAGGAACAACACCA
CGTATCTACCGCAACCAATGCTCAACCAAAGGAGAACGAAGTACCACAAC
AAAAAGACGCATTACCGAATCCACAGAATACTCTCCAAGAGGGTaacgaa
aatgtaaacaaactactGGTCGTCTTACAGCTTCCACAGTCTGCATCCAA
CCTCAGAAACGAACAAGGTGCGCTACAAGTGGACAGCATTCAACAACTTC
TCGGTACCGTAAGAATTGACAAGTTAGTTGTCACCACTGATCCCATTTCT
AATTCATCACAAGCAGTGGCTTTACAATTATCACAATCTCAACAACAAAG
TATTCAGCAAATTCTACAAACAACCCATATCAGACGACAAAATCCACCTA
TTTCAACTCTGGAAAGTCTCAACAAAGCCCCACTAAATGCTCTTGAGACA
CTTACATCCACCTTGAACGAGGCTGCAACGTTTCCTGATTTGACATCACA
CGATACGATGGACGCTCCCGATCTTTCACAGCACGTTCAGTCATCCTTTG
TCCTCAAGTCACTCTCACATCAACCGCCCCCACCGCCGGAAAGCAAATCA
GTCTCTCAATATCTCATTGTACCACCAACAGGCCCTGGGTTTACACCAAT
TGTTAATTCGAAGATCAAAATTATCCACAAACCGCCAGAACCGATCGGAA
ATAACTCTGTTTTCACTAGACCACCTCCGAATCTTCTGCAAAACAATGAA
CTGGTCCCAACCCATCCTTTAGAACTGATCGTAAATGATGAAGATGTTCC
AGAAACAGGTGTCAAACAAGGGGATTCTTTTGAACCAAATACGACTTCCT
TAACCATGGGTTCTCTTCATCAGACTCCTGAAAATTCAAATACAGAAGAG
AAAGTCAGGAATTCATCCTCGTCCAATTATTTTCAGCATTNaCCCAGGGC
TAGAGGCCAAGCCAAGAGCGAAATGGATGCTTCTGTTGTGACTCCAATGA
TCACAGAAACATCAACGAATGACGAGGTTTATAATTTCATACAATTACAA
CACACTTCAAATGAAGCTTCACAACCATCAGAAATGGAATCAACAGTTCA
AACAGAAACTATGGAACACGATTCTCAAGTGATCGAACCTCGGAAAGAAA
TAGGAACTACTGCTGTAGACCAAACGAATCAATTCGATCAAAACATCACA
CATATGACACAAACTTTTGAACCTGTGAATTTGTACGTGTGTGACAAATG
CAATCGAACATTCAAACAAAAATCACGATACGAGCGTCATATACAGAACC
ATCCTAGTGAGAAACATTATCTTTGTGAAACGTGTCACAAGACCTTCACA
AGAGTGTCACACTTAGAGAAACACATTAAAACGCACACTGAAGAGAGAAG
TCATTTATGCGAGGTGTGTGGCGCCGCTTTCATTCTACCACACCACTTGG
TAAGACATATGCTCGTTCACTCAGGTGAGAGACCTTATCAATGTGAAGTA
TGTAATAAAACGTTCACACGGAAAGCTGGACTCACGCAACATCAACATGT
TCATACCGGTCTACGTCCTTACGGTTGTGAGCATGAGAACTGTGGTCGAT
ATTTTACTGATAAGACTACATTACGTCGACACATGATGACGCACTCTAGT
GAAAAACCATTCGTTTGCAAAGAATGTGATAAAACTTTTCGGACAAAATC
TGCATGTCGGAAGCATTATTTGCGACATTTTAAAGATGGTGCATCATATA
AATGCGGTGTTTGCGAAGAAATGTTTAAGGATGAAAGAGAGTATAAAATG
CATTTAGAAACACACGACGAGAAGCAACGTACCGGTGCTCACCGATGTGG
TTTCTGTTTGCGTGTTTTCAAAAGTCAAGAAGATCTGAATGCTCATGTAC
CGTTACACGAATCGGGTCTTCAATACACATGCGAGCGATGCTCTGCCAGG
TTTTTCACACAAGTTGACTTCTTGAAACACACAGCCAAACATTTTGAAGA
ATCTACTTTAGCTGTTGAGCAAAATATACAGGAACAACACCACGTATCTA
CCGCAACCAATGCTCAACCAAAGGAGAACGAAGTACCACAACAAAAAGAC
GCATTACCGAATCCACAGAATACTCTCCAAGAGGGTaacgaaaatgtaaa
caaactactGGTCGTCTTACAGCTTCCACAGTCTGCATCCAACCTCAGAA
ACGAACAAGGTGCGCTACAAGTGGACAGCATTCAACAACTTCTCGGTACC
GTAAGAATTGACAAGTTAGTTGTCACCACTGATCCCATTTCTAATTCATC
ACAAGCAGTGGCTTTACAATTATCACAATCTCAACAACAAAGTATTCAGC
AAATTCTACAAACAACCCATATCAGACGACAAAATCCACCTATTTCAACT
CTGGAAAGTCTCAACAAAGCCCCACTAAATGCTCTTGAGACACTTACATC
CACCTTGAACGAGGCTGCAACGTTTCCTGATTTGACATCACACGATACGA
TGGACGCTCCCGATCTTTCACAGCACGTTCAGTCATCCTTTGTCCTCAAG
TCACTCTCACATCAACCGCCCCCACCGCCGGAAAGCAAATCAGTCTCTCA
ATATCTCATTGTACCACCAACAGGCCCTGGGTTTACACCAATTGTTAATT
CGAAGATCAAAATTATCCACAAACCGCCAGAACCGATCGGAAATAACTCT
GTTTTCACTAGACCACCTCCGAATCTTCTGCAAAACAATGAACTGGTCCC
AACCCATCCTTTAGAACTGATCGTAAATGATGAAGATGTTCCAGAAACAG
GTGTCAAACAAGGGGATTCTTTTGAACCAAATACGACTTCCTTAACCATG
GGTTCTCTTCATCAGACTCCTGAAAATTCAAATACAGAAGAGAAAGTCAG
GAATTCATCCTCGTCCAATTATTTTCAGCATTNaCCCAGGGCTAGAGGCC
AAGCCAAGAGCGAAATGGATGCTTCTGTTGTGACTCCAATGATCACAGAA
ACATCAACGAATGACGAGGTTTATAATTTCATACAATTACAACACACTTC
AAATGAAGCTTCACAACCATCAGAAATGGAATCAACAGTTCAAACAGAAA
CTATGGAACACGATTCTCAAGTGATCGAACCTCGGAAAGAAATAGGAACT
ACTGCTGTAGACCAAACGAATCAATTCGATCAAAACATCACACATATGAC
ACAAACTTTTGAACCTGTGAATTTGTACGTGTGTGACAAATGCAATCGAA
CATTCAAACAAAAATCACGATACGAGCGTCATATACAGAACCATCCTAGT
GAGAAACATTATCTTTGTGAAACGTGTCACAAGACCTTCACAAGAGTGTC
ACACTTAGAGAAACACATTAAAACGCACACTGAAGAGAGAAGTCATTTAT
GCGAGGTGTGTGGCGCCGCTTTCATTCTACCACACCACTTGGTAAGACAT
ATGCTCGTTCACTCAGGTGAGAGACCTTATCAATGTGAAGTATGTAATAA
AACGTTCACACGGAAAGCTGGACTCACGCAACATCAACATGTTCATACCG
GTCTACGTCCTTACGGTTGTGAGCATGAGAACTGTGGTCGATATTTTACT
GATAAGACTACATTACGTCGACACATGATGACGCACTCTAGTGAAAAACC
ATTCGTTTGCAAAGAATGTGATAAAACTTTTCGGACAAAATCTGCATGTC
GGAAGCATTATTTGCGACATTTTAAAGATGGTGCATCATATAAATGCGGT
GTTTGCGAAGAAATGTTTAAGGATGAAAGAGAGTATAAAATGCATTTAGA
AACACACGACGAGAAGCAACGTACCGGTGCTCACCGATGTGGTTTCTGTT
TGCGTGTTTTCAAAAGTCAAGAAGATCTGAATGCTCATGTACCGTTACAC
GAATCGGGTCTTCAATACACATGCGAGCGATGCTCTGCCAGGTTTTTCAC
ACAAGTTGACTTCTTGAAACACACAGCCAAACATTTTGAAGAATCTACTT
TAGCTGTTGAGCAAAATATACAGGAACAACACCACGTATCTACCGCAACC
AATGCTCAACCAAAGGAGAACGAAGTACCACAACAAAAAGACGCATTACC
GAATCCACAGAATACTCTCCAAGAGGGTaacgaaaatgtaaacaaactac
tGGTCGTCTTACAGCTTCCACAGTCTGCATCCAACCTCAGAAACGAACAA
GGTGCGCTACAAGTGGACAGCATTCAACAACTTCTCGGTACCGTAAGAAT
TGACAAGTTAGTTGTCACCACTGATCCCATTTCTAATTCATCACAAGCAG
TGGCTTTACAATTATCACAATCTCAACAACAAAGTATTCAGCAAATTCTA
CAAACAACCCATATCAGACGACAAAATCCACCTATTTCAACTCTGGAAAG
TCTCAACAAAGCCCCACTAAATGCTCTTGAGACACTTACATCCACCTTGA
ACGAGGCTGCAACGTTTCCTGATTTGACATCACACGATACGATGGACGCT
CCCGATCTTTCACAGCACGTTCAGTCATCCTTTGTCCTCAAGTCACTCTC
ACATCAACCGCCCCCACCGCCGGAAAGCAAATCAGTCTCTCAATATCTCA
TTGTACCACCAACAGGCCCTGGGTTTACACCAATTGTTAATTCGAAGATC
AAAATTATCCACAAACCGCCAGAACCGATCGGAAATAACTCTGTTTTCAC
TAGACCACCTCCGAATCTTCTGCAAAACAATGAACTGGTCCCAACCCATC
CTTTAGAACTGATCGTAAATGATGAAGATGTTCCAGAAACAGGTGTCAAA
CAAGGGGATTCTTTTGAACCAAATACGACTTCCTTAACCATGGGTTCTCT
TCATCAGACTCCTGAAAATTCAAATACAGAAGAGAAAGTCAGGAATTCAT
CCTCGTCCAATTATTTTCAGCATTNaCCCAGGGCTAGAGGCCAAGCCAAG
AGCGAAATGGATGCTTCTGTTGTGACTCCAATGATCACAGAAACATCAAC
GAATGACGAGGTTTATAATTTCATACAATTACAACACACTTCAAATGAAG
CTTCACAACCATCAGAAATGGAATCAACAGTTCAAACAGAAACTATGGAA
CACGATTCTCAAGTGATCGAACCTCGGAAAGAAATAGGAACTACTGCTGT
AGACCAAACGAATCAATTCGATCAAAACATCACACATATGACACAAACTT
TTGAACCTGTGAATTTGTACGTGTGTGACAAATGCAATCGAACATTCAAA
CAAAAATCACGATACGAGCGTCATATACAGAACCATCCTAGTGAGAAACA
TTATCTTTGTGAAACGTGTCACAAGACCTTCACAAGAGTGTCACACTTAG
AGAAACACATTAAAACGCACACTGAAGAGAGAAGTCATTTATGCGAGGTG
TGTGGCGCCGCTTTCATTCTACCACACCACTTGGTAAGACATATGCTCGT
TCACTCAGGTGAGAGACCTTATCAATGTGAAGTATGTAATAAAACGTTCA
CACGGAAAGCTGGACTCACGCAACATCAACATGTTCATACCGGTCTACGT
CCTTACGGTTGTGAGCATGAGAACTGTGGTCGATATTTTACTGATAAGAC
TACATTACGTCGACACATGATGACGCACTCTAGTGAAAAACCATTCGTTT
GCAAAGAATGTGATAAAACTTTTCGGACAAAATCTGCATGTCGGAAGCAT
TATTTGCGACATTTTAAAGATGGTGCATCATATAAATGCGGTGTTTGCGA
AGAAATGTTTAAGGATGAAAGAGAGTATAAAATGCATTTAGAAACACACG
ACGAGAAGCAACGTACCGGTGCTCACCGATGTGGTTTCTGTTTGCGTGTT
TTCAAAAGTCAAGAAGATCTGAATGCTCATGTACCGTTACACGAATCGGG
TCTTCAATACACATGCGAGCGATGCTCTGCCAGGTTTTTCACACAAGTTG
ACTTCTTGAAACACACAGCCAAACATTTTGAAGAATCTACTTTAGCTGTT
GAGCAAAATATACAGGAACAACACCACGTATCTACCGCAACCAATGCTCA
ACCAAAGGAGAACGAAGTACCACAACAAAAAGACGCATTACCGAATCCAC
AGAATACTCTCCAAGAGGGTaacgaaaatgtaaacaaactactGGTCGTC
TTACAGCTTCCACAGTCTGCATCCAACCTCAGAAACGAACAAGGTGCGCT
ACAAGTGGACAGCATTCAACAACTTCTCGGTACCGTAAGAATTGACAAGT
TAGTTGTCACCACTGATCCCATTTCTAATTCATCACAAGCAGTGGCTTTA
CAATTATCACAATCTCAACAACAAAGTATTCAGCAAATTCTACAAACAAC
CCATATCAGACGACAAAATCCACCTATTTCAACTCTGGAAAGTCTCAACA
AAGCCCCACTAAATGCTCTTGAGACACTTACATCCACCTTGAACGAGGCT
GCAACGTTTCCTGATTTGACATCACACGATACGATGGACGCTCCCGATCT
TTCACAGCACGTTCAGTCATCCTTTGTCCTCAAGTCACTCTCACATCAAC
CGCCCCCACCGCCGGAAAGCAAATCAGTCTCTCAATATCTCATTGTACCA
CCAACAGGCCCTGGGTTTACACCAATTGTTAATTCGAAGATCAAAATTAT
CCACAAACCGCCAGAACCGATCGGAAATAACTCTGTTTTCACTAGACCAC
CTCCGAATCTTCTGCAAAACAATGAACTGGTCCCAACCCATCCTTTAGAA
CTGATCGTAAATGATGAAGATGTTCCAGAAACAGGTGTCAAACAAGGGGA
TTCTTTTGAACCAAATACGACTTCCTTAACCATGGGTTCTCTTCATCAGA
CTCCTGAAAATTCAAATACAGAAGAGAAAGTCAGGAATTCATCCTCGTCC
AATTATTTTCAGCATTNa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036520XLOC_036520Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057916-proteinTCONS_00057916-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057916-exon-scaffold_302-1491911889:71169..71192TCONS_00057916-exon-scaffold_302-1491911889:71169..71192Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1510915933:71169..71192TCONS_00057916-exon-scaffold_302-1510915933:71169..71192Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1575043694:71169..71192TCONS_00057916-exon-scaffold_302-1575043694:71169..71192Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1491911889:73371..73414TCONS_00057916-exon-scaffold_302-1491911889:73371..73414Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1510915933:73371..73414TCONS_00057916-exon-scaffold_302-1510915933:73371..73414Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1575043694:73371..73414TCONS_00057916-exon-scaffold_302-1575043694:73371..73414Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1491911889:73471..73673TCONS_00057916-exon-scaffold_302-1491911889:73471..73673Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1510915933:73471..73673TCONS_00057916-exon-scaffold_302-1510915933:73471..73673Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1575043694:73471..73673TCONS_00057916-exon-scaffold_302-1575043694:73471..73673Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1491911889:74536..76256TCONS_00057916-exon-scaffold_302-1491911889:74536..76256Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1510915933:74536..76256TCONS_00057916-exon-scaffold_302-1510915933:74536..76256Clytia hemisphaericaexon
TCONS_00057916-exon-scaffold_302-1575043694:74536..76256TCONS_00057916-exon-scaffold_302-1575043694:74536..76256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:71169..76256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.00126366 tpm) - - (15.1359 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.36622 11.0203 7.1743 6.46771 0.0708446 0.0452827 4.25061 2.47549 3.37828 4.05994 5.92021 5.25031 10.0387 2.48101 8.56656 8.15169 2.26919 10.2651 8.37519 6.695 3.87066 5.95995 15.1359 9.45718 0.00126366 0.124663 1.00297 1.857 9.90874 8.56523
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Expect = 7.60e-36 / Id = 33.68Expect = 6.54e-33 / Id = 33.68Expect = 2.63e-46 / Id = 33.68Expect = 2.28e-40 / Id = 33.68Expect = 4.88e-40 / Id = 33.68Expect = 3.03e-37 / Id = 33.68Expect = 6.76e-37 / Id = 33.68Expect = 2.95e-20 / Id = 33.68Expect = 4.83e-38 / Id = 33.68SequenceZN184
Match NameE-valueIdentityDescription
ZN1842.634e-4633.68Zinc finger protein 184 OS=Homo sapiens GN=ZNF184 ... [more]
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