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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057938 ID=TCONS_00057938|Name=TCONS_00057938|organism=Clytia hemisphaerica|type=transcript|length=1514bp aataaaattttcttgagaaagattttttcccacagaaaaatataaaatca gtTTCTTGGGGCAgtcaaattttcatgaaaagaaATTCTATGTAAAGATA AAAACAGGAGCGGTATATACAGGAAAATGcatcgttgaaaaaattattgc acGCATCAATGGAATGAGGTTGGGTATCGTATTTTAAAACAGAGACATAC GATTATCAAGTATACTTCATATCAACAATAAAACATTTAATCAAGGCAAA AAGTAGGTTGTAAGAAGGAAGAGAGAGACACAATTTTGGTCTACTACCCA CTAGAAAATGAACACAGTTTTACTCATCCTTTTTTCAATAACAACTGGAG CATCATGGGTATCCACAATGCATCAGGACCGCATCAATGCATTGCACGAA GACATGGACGAGGTTGATCCCCATTACTACAAACCACTACCATTGCCCTT GAAAGATGCGATAATTTATGTCAAGAAGTATGGTCCGTATGCAGCAGAAA AGAGAATTAAAGTGAAACGGAGACATAGCAAGAAATCGATCAAACTTATG GAATGCAAACAACGTGACCGACCTCCCAaatGTGAGCGTCAAGTGAATGG TTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAGT TTACATCAAGCTGCAACAAACACGATGTCTGTTATGATTGCGGATTTGCG AGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGT GGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTT TAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTC AGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTG TGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGAAGTAAAG GATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAATACATAGTATTTC AATTGACAAATGACTCTATTGACTTTGTATTGAAATTGTGTTACATTAAG AAGGAATTAATTTcggtaaattttctttttaattttgttatCAAACAAAT TAGTTCTCAttagaatttaaaaagattCATTCAatctcaccaaaattagt tcccttaaccTAAGTACCACGGTCTTTTTTTCtagatcactcgttgacca aaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagtggatttttggca aatttttgcatttttttgactttttggcttaaaatctcgctggaaagact cacttttgatttttttttacttgaccatgaagcacaattcaatttctaaa gctagaaataattttttctctctGAGGTcctttattttaaatatttatga CCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTTGTGtgaagaaat attttctatatttgtgttttttttatctaaacaTTGGTTATGAGTACGTC TGCGAGAAGATCGC Run BLAST on NCBI protein sequence of TCONS_00057938-protein >TCONS_00057938-protein ID=TCONS_00057938-protein|Name=TCONS_00057938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MNTVLLILFSITTGASWVSTMHQDRINALHEDMDEVDPHYYKPLPLPLKD AIIYVKKYGPYAAEKRIKVKRRHSKKSIKLMECKQRDRPPKCERQVNGCG SGFTESVPLLFRDKFTSSCNKHDVCYDCGFARNWTRSDCDNTLYQDAVDA CECAYPGFLASAERLACREMAESIYMAVRVFSESYFSTHIKDFCLNDCVL SYGSPKLSNMV Run BLAST on NCBI transcript from alignment at scaffold_302:378642..383205+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057938 ID=TCONS_00057938|Name=TCONS_00057938|organism=Clytia hemisphaerica|type=transcript|length=4564bp|location=Sequence derived from alignment at scaffold_302:378642..383205+ (Clytia hemisphaerica) aataaaattttcttgagaaagattttttcccacagaaaaatataaaatca
gtTTCTTGGGGCAgtcaaattttcatgaaaagaaATTCTATGTAAAGATA
AAAACAGGAGCGGTATATACAGGTGATGTCAATATGATATCTAGTTTATT
GATGTTTGATTGACTTAAATATTAGGATATTGCATTATTCAACCAAAGAA
TAGGACTATGCTACAttatttaaatatttcaaaattattcttCAGGAAAA
TGcatcgttgaaaaaattattgcacGCATCAATGGAATGAGGTTGGGTAT
CGTATTTTAAAACAGAGACATACGATTATCAAGTATACTTCATATCAACA
ATAAAACATTTAATCAAGGCAAAAAGGTTGTGTGACTCTTAACTCCAGGA
CTTAATAGTGGTTTTCAAATGTAGCCTCTGCTTTTCATggcttttcaatt
tctttttgaaatttgttgattTAAGCCCTCCCTGGAAACAAACTAACGCA
CATAGTTATGGAGGATTGACCTTTCTTGAACTAACATTGTACTGCAATCG
ACAAAGTATTAAAAACAGTTCAAGATTAACATGGACCACCCCTTATTTGT
AAATGGTGTAAAAATACTAAACTTTAGTGTGTGATTTCTTATGATGATCA
GTTTTCACTCTTATCTCAACGTTTTGCTTCAGTAGGTTGTAAGAAGGAAG
AGAGAGACACAATTTTGGTCTACTACCCACTAGAAAATGGTAATTTTTAT
TTGGGTTTTTTGTTTTAAACCATGCTACATTTGCCTGCTTTTCATTTCCA
TCTTTTCGGTTTCTTAAGCCAAGAAGAGTATACTCTACACAAAGGAAAAT
GAAACGGATTTCTTGCGATCTTCTTTTCTATTTCAGAACACAGTTTTACT
CATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACAATGCATC
AGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGATCCCCAT
TACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTTATGTCAA
GAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGAC
ATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGACCGACCT
CCCAGTAAGTCAATATACTTCATTTTATGCTAGTATATTTTGGACAGAGA
TAATACTTTGATAGCATAAAAcgcttttatttaaaaaaatattactgAAG
CGGTAGAATTTATTACCCAGGCTATTGCTTAAATCTCAAAACGGAACATT
AGAATTCAGGACCttgtttcattcaaaaacactttcaaaattgatataat
ttaattttctcGTAATTCCTCTCAAAAAACATAATTCAATCAATTTCTGC
TTTTTGGCTTATAAATCGAAATGTTAATTCAATCAAATATCCCCGACTAA
ATACAGGAAGGAAAAAGTCGAAATACAGATATTAAAAAtcttatcggcga
tccaaaaaatatctgcagtCTGATTGGTTGTAAACAGTACgatatatttt
gtattttacatgtacaaaatataaattgacgaaaagatgttgttgcattg
tagtgGGAGCAGTAAtctaaggcgaaaataaaaaaatgtagtgtttctgg
aatgcgggtgaaggaaaaaagctctcatgcgggcCAAACGACAACTATTA
TAAACGATACAAACTATTACTTATTGTCTTAAGGGGGCATGTTGTAAGGC
TATCTGAAAACAGTGAAATTtggacgaacgtactttttgaatgcccCCCC
TCCCCCAATAGTCAATAGTAATATCTAGAACCGTTTTTCTGATTCAAACA
TTTGCAATTAAAGCATTTTTGATGACTTGTGACTAGAGTCTCTAAATTTA
AATAGTGGTTGGTTGGATTCGACTGAATTGACATACTTATGCCTTGGGCA
TACTTGCGCGAACGTTTAATTATTAATTATAGTGAGTGCTATGTTCTTAG
TGTGCACATACTCTCGGGTACCTAATAGCCGTCCCCCCCCCAATATTTTT
GAAAGTTCCCTCTTTTGTCCTAATTCAACTGTATTAGTATCTTTTTCAAA
AATTTTCCACCCAGGACATTTTTATTCCAACCCCCACCCTGCTTATTAAG
TTTTGAGATTTTTCCAACCCCCCCCTCCCCCggctattaggtacccgaga
gtacttgtTACAAACCAACTaatgttttttaaatgatcaatttggtctat
aagatcacaaaaacgagtggtgagaaaaattcGGTCCccatatgacgtca
tcatttgcttaggcttgaaaatgaaagtgaaaattacaAGCTCAAATATG
GCTCAGATGAAAAATATTCATCCAAAGATTAAACAAATATCACAACattt
atctgaaaatgaatacacgtttttttttttttaagaaacacacttttaag
aaacatgaggctcagaatgcctaaaaactaagaaacatctaagaaacatg
ccgaggctgagaatgagaaaataacatttttaaaacggtttttttagaac
cttccaatctttgcgtgaaaaataggctgattatgtcaaaaagtttagaa
acatgtaagaaacatttaaggctcaaaaggccgatttcttaagaaacatt
gaggctgcttggtaaaactagtttcttaaaaaaaaaaaacgtgtatttga
aaAGCAATAACGGAAAATAGCTCAAATAAGGAGTTCAACTTGACGTAATC
GgtaattaaattgaaaatattttgttttatttgaaaGAAGATCATCTAGA
GAACAAAAAATATCTCCAAAATGGATATTCCCTATGACACCgtcattaaa
ttttattttcagaatGTGAGCGTCAAGTGAATGGTTGTGGGTCGGGCTTC
ACTGAATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAAGCTGCAA
CAAACACGATGTCTGTTATGATTGCGTAAGTCTGTCTCGAAAATCCGCTC
AAGCTGCTTTCGATTACTTTCGTTTTAATTACATTCACAGTTGGAATCGA
TATCAATTAAATTAGTCTCTTAAGCCTTTGACATGATTTGACCCTATTCG
GATTACTAAAATGGTATTTTTAGTCAAACAATGTTCGTGTCTGAGGCGTA
GTGGTGTCGTTGTCATCGCTCTTAACTCCCGTCTGGGTGGTccgagttcg
attcccactgtagtactacggttcacttggcaagtgaacataacttcgcc
cgggtcaaaccataccatgtgaggggaattgtgTAACACTACTCTGATGC
AAGGGTGTGGGTGATatgccagacattgtggtgtgtaTGGTATCACCACT
ATGCATCATGGTATCTGTGTCTCGCGTGCACAGAACCAGCGGTGTCTAGA
CAGCGCTAAGCGTTCCAACTTGAAAAGGAAGGAATTCCTACTTCGTACGG
AGTAGAACCCATCCCCAGTGGGGAGGGCTCATATTATATCATCAATATTC
GTGTCACAAGAGAGCCCTGTCTCACTCCCTCatctggaaaaaaatattta
cccaTCGGGAACATGAAAAAGATGAATATAAATAGGCTATATAGAAAAGT
CTCTTGCTTTTATGAGCAGTCCCTTGCTTTAATGTTAACCTTTGAAATGT
CAACTATTGTACCTTTAGTTATGATTGTTGGGCTGAAAAATGTTTTACAT
TCTGCCGGACCCTGATGTTCATACTGTTTTATCATGTTCAGGGATTTGCG
AGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGT
GGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTT
TAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTC
AGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTG
TGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGAAGTAAAG
GATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAATACATAGTATTTC
AATTGACAAATGACTCTATTGACTTTGTATTGAAATTGTGTTACATTAAG
AAGGAATTAATTTcggtaaattttctttttaattttgttatCAAACAAAT
TAGTTCTCAttagaatttaaaaagattCATTCAatctcaccaaaattagt
tcccttaaccTAAGTACCACGGTCTTTTTTTCtagatcactcgttgacca
aaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagtggatttttggca
aatttttgcatttttttgactttttggcttaaaatctcgctggaaagact
cacttttgatttttttttacttgaccatgaagcacaattcaatttctaaa
gctagaaataattttttctctctGAGGTcctttattttaaatatttatga
CCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTTGTGtgaagaaat
attttctatatttgtgttttttttatctaaacaTTGGTTATGAGTACGTC
TGCGAGAAGATCGC Coding sequence (CDS) from alignment at scaffold_302:378642..383205+ >TCONS_00057938 ID=TCONS_00057938|Name=TCONS_00057938|organism=Clytia hemisphaerica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_302:378642..383205+ (Clytia hemisphaerica) ATGAACACAGTTTTACTCATCCTTTTTTCAATAACAACTGGAGCATCATG GGTATCCACAATGCATCAGGACCGCATCAATGCATTGCACGAAGACATGG ACGAGGTTGATCCCCATTACTACAAACCACTACCATTGCCCTTGAAAGAT GCGATAATTTATGTCAAGAAGTATGGTCCGTATGCAGCAGAAAAGAGAAT TAAAGTGAAACGGAGACATAGCAAGAAATCGATCAAACTTATGGAATGCA AACAACGTGACCGACCTCCCAaatGTGAGCGTCAAGTGAATGGTTGTGGG TCGGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATC AAGCTGCAACAAACACGATGTCTGTTATGATTGCGGATTTGCGAGAAACT GGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGTGGATGCT TGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTTTAGCATG CAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTCAGTGAAA GTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTGTGTATTG TCATATGGAAGCCCTAAATTGAGCAATATGGTATGAATGAACACAGTTTT ACTCATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACAATGC ATCAGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGATCCC CATTACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTTATGT CAAGAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGA GACATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGACCGA CCTCCCAaatGTGAGCGTCAAGTGAATGGTTGTGGGTCGGGCTTCACTGA ATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAAGCTGCAACAAAC ACGATGTCTGTTATGATTGCGGATTTGCGAGAAACTGGACACGATCGGAC TGTGATAACACTTTATACCAAGACGCTGTGGATGCTTGTGAGTGCGCTTA TCCTGGTTTTCTAGCCTCTGCAGAACGTTTAGCATGCAGAGAAATGGCCG AGTCGATCTATATGGCTGTTCGTGTATTCAGTGAAAGTTACTTTAGTACA CATATCAAGGACTTTTGTTTGAACGATTGTGTATTGTCATATGGAAGCCC TAAATTGAGCAATATGGTATGAATGAACACAGTTTTACTCATCCTTTTTT CAATAACAACTGGAGCATCATGGGTATCCACAATGCATCAGGACCGCATC AATGCATTGCACGAAGACATGGACGAGGTTGATCCCCATTACTACAAACC ACTACCATTGCCCTTGAAAGATGCGATAATTTATGTCAAGAAGTATGGTC CGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGACATAGCAAGAAA TCGATCAAACTTATGGAATGCAAACAACGTGACCGACCTCCCAaatGTGA GCGTCAAGTGAATGGTTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCC TCTTTCGTGATAAGTTTACATCAAGCTGCAACAAACACGATGTCTGTTAT GATTGCGGATTTGCGAGAAACTGGACACGATCGGACTGTGATAACACTTT ATACCAAGACGCTGTGGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAG CCTCTGCAGAACGTTTAGCATGCAGAGAAATGGCCGAGTCGATCTATATG GCTGTTCGTGTATTCAGTGAAAGTTACTTTAGTACACATATCAAGGACTT TTGTTTGAACGATTGTGTATTGTCATATGGAAGCCCTAAATTGAGCAATA TGGTATGAATGAACACAGTTTTACTCATCCTTTTTTCAATAACAACTGGA GCATCATGGGTATCCACAATGCATCAGGACCGCATCAATGCATTGCACGA AGACATGGACGAGGTTGATCCCCATTACTACAAACCACTACCATTGCCCT TGAAAGATGCGATAATTTATGTCAAGAAGTATGGTCCGTATGCAGCAGAA AAGAGAATTAAAGTGAAACGGAGACATAGCAAGAAATCGATCAAACTTAT GGAATGCAAACAACGTGACCGACCTCCCAaatGTGAGCGTCAAGTGAATG GTTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAG TTTACATCAAGCTGCAACAAACACGATGTCTGTTATGATTGCGGATTTGC GAGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTG TGGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGT TTAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATT CAGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATT GTGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057938-exon-scaffold_302-1491911889:378642..378763 | TCONS_00057938-exon-scaffold_302-1491911889:378642..378763 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1510915933:378642..378763 | TCONS_00057938-exon-scaffold_302-1510915933:378642..378763 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1575043694:378642..378763 | TCONS_00057938-exon-scaffold_302-1575043694:378642..378763 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1491911889:378887..379017 | TCONS_00057938-exon-scaffold_302-1491911889:378887..379017 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1510915933:378887..379017 | TCONS_00057938-exon-scaffold_302-1510915933:378887..379017 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1575043694:378887..379017 | TCONS_00057938-exon-scaffold_302-1575043694:378887..379017 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1491911889:379324..379380 | TCONS_00057938-exon-scaffold_302-1491911889:379324..379380 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1510915933:379324..379380 | TCONS_00057938-exon-scaffold_302-1510915933:379324..379380 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1575043694:379324..379380 | TCONS_00057938-exon-scaffold_302-1575043694:379324..379380 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1491911889:379528..379795 | TCONS_00057938-exon-scaffold_302-1491911889:379528..379795 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1510915933:379528..379795 | TCONS_00057938-exon-scaffold_302-1510915933:379528..379795 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1575043694:379528..379795 | TCONS_00057938-exon-scaffold_302-1575043694:379528..379795 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1491911889:381504..381616 | TCONS_00057938-exon-scaffold_302-1491911889:381504..381616 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1510915933:381504..381616 | TCONS_00057938-exon-scaffold_302-1510915933:381504..381616 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1575043694:381504..381616 | TCONS_00057938-exon-scaffold_302-1575043694:381504..381616 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1491911889:382383..383205 | TCONS_00057938-exon-scaffold_302-1491911889:382383..383205 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1510915933:382383..383205 | TCONS_00057938-exon-scaffold_302-1510915933:382383..383205 | Clytia hemisphaerica | exon |
TCONS_00057938-exon-scaffold_302-1575043694:382383..383205 | TCONS_00057938-exon-scaffold_302-1575043694:382383..383205 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_302 | supercontig | scaffold_302:378642..383205 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR016090 | PLipase_A2_dom |
Vocabulary: Molecular Function
Term | Definition |
GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
Term | Definition |
GO:0050482 | arachidonic acid secretion |
GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0050482 |
arachidonic acid secretion |
biological_process |
GO:0006644 |
phospholipid metabolic process |
molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
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