TCONS_00057938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057938
Unique NameTCONS_00057938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057938 ID=TCONS_00057938|Name=TCONS_00057938|organism=Clytia hemisphaerica|type=transcript|length=1514bp
aataaaattttcttgagaaagattttttcccacagaaaaatataaaatca
gtTTCTTGGGGCAgtcaaattttcatgaaaagaaATTCTATGTAAAGATA
AAAACAGGAGCGGTATATACAGGAAAATGcatcgttgaaaaaattattgc
acGCATCAATGGAATGAGGTTGGGTATCGTATTTTAAAACAGAGACATAC
GATTATCAAGTATACTTCATATCAACAATAAAACATTTAATCAAGGCAAA
AAGTAGGTTGTAAGAAGGAAGAGAGAGACACAATTTTGGTCTACTACCCA
CTAGAAAATGAACACAGTTTTACTCATCCTTTTTTCAATAACAACTGGAG
CATCATGGGTATCCACAATGCATCAGGACCGCATCAATGCATTGCACGAA
GACATGGACGAGGTTGATCCCCATTACTACAAACCACTACCATTGCCCTT
GAAAGATGCGATAATTTATGTCAAGAAGTATGGTCCGTATGCAGCAGAAA
AGAGAATTAAAGTGAAACGGAGACATAGCAAGAAATCGATCAAACTTATG
GAATGCAAACAACGTGACCGACCTCCCAaatGTGAGCGTCAAGTGAATGG
TTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAGT
TTACATCAAGCTGCAACAAACACGATGTCTGTTATGATTGCGGATTTGCG
AGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGT
GGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTT
TAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTC
AGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTG
TGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGAAGTAAAG
GATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAATACATAGTATTTC
AATTGACAAATGACTCTATTGACTTTGTATTGAAATTGTGTTACATTAAG
AAGGAATTAATTTcggtaaattttctttttaattttgttatCAAACAAAT
TAGTTCTCAttagaatttaaaaagattCATTCAatctcaccaaaattagt
tcccttaaccTAAGTACCACGGTCTTTTTTTCtagatcactcgttgacca
aaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagtggatttttggca
aatttttgcatttttttgactttttggcttaaaatctcgctggaaagact
cacttttgatttttttttacttgaccatgaagcacaattcaatttctaaa
gctagaaataattttttctctctGAGGTcctttattttaaatatttatga
CCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTTGTGtgaagaaat
attttctatatttgtgttttttttatctaaacaTTGGTTATGAGTACGTC
TGCGAGAAGATCGC
Run BLAST on NCBI

protein sequence of TCONS_00057938-protein

>TCONS_00057938-protein ID=TCONS_00057938-protein|Name=TCONS_00057938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MNTVLLILFSITTGASWVSTMHQDRINALHEDMDEVDPHYYKPLPLPLKD
AIIYVKKYGPYAAEKRIKVKRRHSKKSIKLMECKQRDRPPKCERQVNGCG
SGFTESVPLLFRDKFTSSCNKHDVCYDCGFARNWTRSDCDNTLYQDAVDA
CECAYPGFLASAERLACREMAESIYMAVRVFSESYFSTHIKDFCLNDCVL
SYGSPKLSNMV
Run BLAST on NCBI

transcript from alignment at scaffold_302:378642..383205+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057938 ID=TCONS_00057938|Name=TCONS_00057938|organism=Clytia hemisphaerica|type=transcript|length=4564bp|location=Sequence derived from alignment at scaffold_302:378642..383205+ (Clytia hemisphaerica)
aataaaattttcttgagaaagattttttcccacagaaaaatataaaatca gtTTCTTGGGGCAgtcaaattttcatgaaaagaaATTCTATGTAAAGATA AAAACAGGAGCGGTATATACAGGTGATGTCAATATGATATCTAGTTTATT GATGTTTGATTGACTTAAATATTAGGATATTGCATTATTCAACCAAAGAA TAGGACTATGCTACAttatttaaatatttcaaaattattcttCAGGAAAA TGcatcgttgaaaaaattattgcacGCATCAATGGAATGAGGTTGGGTAT CGTATTTTAAAACAGAGACATACGATTATCAAGTATACTTCATATCAACA ATAAAACATTTAATCAAGGCAAAAAGGTTGTGTGACTCTTAACTCCAGGA CTTAATAGTGGTTTTCAAATGTAGCCTCTGCTTTTCATggcttttcaatt tctttttgaaatttgttgattTAAGCCCTCCCTGGAAACAAACTAACGCA CATAGTTATGGAGGATTGACCTTTCTTGAACTAACATTGTACTGCAATCG ACAAAGTATTAAAAACAGTTCAAGATTAACATGGACCACCCCTTATTTGT AAATGGTGTAAAAATACTAAACTTTAGTGTGTGATTTCTTATGATGATCA GTTTTCACTCTTATCTCAACGTTTTGCTTCAGTAGGTTGTAAGAAGGAAG AGAGAGACACAATTTTGGTCTACTACCCACTAGAAAATGGTAATTTTTAT TTGGGTTTTTTGTTTTAAACCATGCTACATTTGCCTGCTTTTCATTTCCA TCTTTTCGGTTTCTTAAGCCAAGAAGAGTATACTCTACACAAAGGAAAAT GAAACGGATTTCTTGCGATCTTCTTTTCTATTTCAGAACACAGTTTTACT CATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACAATGCATC AGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGATCCCCAT TACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTTATGTCAA GAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGAC ATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGACCGACCT CCCAGTAAGTCAATATACTTCATTTTATGCTAGTATATTTTGGACAGAGA TAATACTTTGATAGCATAAAAcgcttttatttaaaaaaatattactgAAG CGGTAGAATTTATTACCCAGGCTATTGCTTAAATCTCAAAACGGAACATT AGAATTCAGGACCttgtttcattcaaaaacactttcaaaattgatataat ttaattttctcGTAATTCCTCTCAAAAAACATAATTCAATCAATTTCTGC TTTTTGGCTTATAAATCGAAATGTTAATTCAATCAAATATCCCCGACTAA ATACAGGAAGGAAAAAGTCGAAATACAGATATTAAAAAtcttatcggcga tccaaaaaatatctgcagtCTGATTGGTTGTAAACAGTACgatatatttt gtattttacatgtacaaaatataaattgacgaaaagatgttgttgcattg tagtgGGAGCAGTAAtctaaggcgaaaataaaaaaatgtagtgtttctgg aatgcgggtgaaggaaaaaagctctcatgcgggcCAAACGACAACTATTA TAAACGATACAAACTATTACTTATTGTCTTAAGGGGGCATGTTGTAAGGC TATCTGAAAACAGTGAAATTtggacgaacgtactttttgaatgcccCCCC TCCCCCAATAGTCAATAGTAATATCTAGAACCGTTTTTCTGATTCAAACA TTTGCAATTAAAGCATTTTTGATGACTTGTGACTAGAGTCTCTAAATTTA AATAGTGGTTGGTTGGATTCGACTGAATTGACATACTTATGCCTTGGGCA TACTTGCGCGAACGTTTAATTATTAATTATAGTGAGTGCTATGTTCTTAG TGTGCACATACTCTCGGGTACCTAATAGCCGTCCCCCCCCCAATATTTTT GAAAGTTCCCTCTTTTGTCCTAATTCAACTGTATTAGTATCTTTTTCAAA AATTTTCCACCCAGGACATTTTTATTCCAACCCCCACCCTGCTTATTAAG TTTTGAGATTTTTCCAACCCCCCCCTCCCCCggctattaggtacccgaga gtacttgtTACAAACCAACTaatgttttttaaatgatcaatttggtctat aagatcacaaaaacgagtggtgagaaaaattcGGTCCccatatgacgtca tcatttgcttaggcttgaaaatgaaagtgaaaattacaAGCTCAAATATG GCTCAGATGAAAAATATTCATCCAAAGATTAAACAAATATCACAACattt atctgaaaatgaatacacgtttttttttttttaagaaacacacttttaag aaacatgaggctcagaatgcctaaaaactaagaaacatctaagaaacatg ccgaggctgagaatgagaaaataacatttttaaaacggtttttttagaac cttccaatctttgcgtgaaaaataggctgattatgtcaaaaagtttagaa acatgtaagaaacatttaaggctcaaaaggccgatttcttaagaaacatt gaggctgcttggtaaaactagtttcttaaaaaaaaaaaacgtgtatttga aaAGCAATAACGGAAAATAGCTCAAATAAGGAGTTCAACTTGACGTAATC GgtaattaaattgaaaatattttgttttatttgaaaGAAGATCATCTAGA GAACAAAAAATATCTCCAAAATGGATATTCCCTATGACACCgtcattaaa ttttattttcagaatGTGAGCGTCAAGTGAATGGTTGTGGGTCGGGCTTC ACTGAATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAAGCTGCAA CAAACACGATGTCTGTTATGATTGCGTAAGTCTGTCTCGAAAATCCGCTC AAGCTGCTTTCGATTACTTTCGTTTTAATTACATTCACAGTTGGAATCGA TATCAATTAAATTAGTCTCTTAAGCCTTTGACATGATTTGACCCTATTCG GATTACTAAAATGGTATTTTTAGTCAAACAATGTTCGTGTCTGAGGCGTA GTGGTGTCGTTGTCATCGCTCTTAACTCCCGTCTGGGTGGTccgagttcg attcccactgtagtactacggttcacttggcaagtgaacataacttcgcc cgggtcaaaccataccatgtgaggggaattgtgTAACACTACTCTGATGC AAGGGTGTGGGTGATatgccagacattgtggtgtgtaTGGTATCACCACT ATGCATCATGGTATCTGTGTCTCGCGTGCACAGAACCAGCGGTGTCTAGA CAGCGCTAAGCGTTCCAACTTGAAAAGGAAGGAATTCCTACTTCGTACGG AGTAGAACCCATCCCCAGTGGGGAGGGCTCATATTATATCATCAATATTC GTGTCACAAGAGAGCCCTGTCTCACTCCCTCatctggaaaaaaatattta cccaTCGGGAACATGAAAAAGATGAATATAAATAGGCTATATAGAAAAGT CTCTTGCTTTTATGAGCAGTCCCTTGCTTTAATGTTAACCTTTGAAATGT CAACTATTGTACCTTTAGTTATGATTGTTGGGCTGAAAAATGTTTTACAT TCTGCCGGACCCTGATGTTCATACTGTTTTATCATGTTCAGGGATTTGCG AGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGT GGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTT TAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTC AGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTG TGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGAAGTAAAG GATTATGGGTAAAAGACGTTCTCTATTCGCGATCAAATACATAGTATTTC AATTGACAAATGACTCTATTGACTTTGTATTGAAATTGTGTTACATTAAG AAGGAATTAATTTcggtaaattttctttttaattttgttatCAAACAAAT TAGTTCTCAttagaatttaaaaagattCATTCAatctcaccaaaattagt tcccttaaccTAAGTACCACGGTCTTTTTTTCtagatcactcgttgacca aaaatcgtcaaaaaaaacgatcaaaatctcaaaaaagtggatttttggca aatttttgcatttttttgactttttggcttaaaatctcgctggaaagact cacttttgatttttttttacttgaccatgaagcacaattcaatttctaaa gctagaaataattttttctctctGAGGTcctttattttaaatatttatga CCAAATTTGTCAAGTTTCATTTTTCCTTCCACATTCTTGTGtgaagaaat attttctatatttgtgttttttttatctaaacaTTGGTTATGAGTACGTC TGCGAGAAGATCGC

Coding sequence (CDS) from alignment at scaffold_302:378642..383205+

>TCONS_00057938 ID=TCONS_00057938|Name=TCONS_00057938|organism=Clytia hemisphaerica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_302:378642..383205+ (Clytia hemisphaerica)
ATGAACACAGTTTTACTCATCCTTTTTTCAATAACAACTGGAGCATCATG
GGTATCCACAATGCATCAGGACCGCATCAATGCATTGCACGAAGACATGG
ACGAGGTTGATCCCCATTACTACAAACCACTACCATTGCCCTTGAAAGAT
GCGATAATTTATGTCAAGAAGTATGGTCCGTATGCAGCAGAAAAGAGAAT
TAAAGTGAAACGGAGACATAGCAAGAAATCGATCAAACTTATGGAATGCA
AACAACGTGACCGACCTCCCAaatGTGAGCGTCAAGTGAATGGTTGTGGG
TCGGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATC
AAGCTGCAACAAACACGATGTCTGTTATGATTGCGGATTTGCGAGAAACT
GGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTGTGGATGCT
TGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGTTTAGCATG
CAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATTCAGTGAAA
GTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATTGTGTATTG
TCATATGGAAGCCCTAAATTGAGCAATATGGTATGAATGAACACAGTTTT
ACTCATCCTTTTTTCAATAACAACTGGAGCATCATGGGTATCCACAATGC
ATCAGGACCGCATCAATGCATTGCACGAAGACATGGACGAGGTTGATCCC
CATTACTACAAACCACTACCATTGCCCTTGAAAGATGCGATAATTTATGT
CAAGAAGTATGGTCCGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGA
GACATAGCAAGAAATCGATCAAACTTATGGAATGCAAACAACGTGACCGA
CCTCCCAaatGTGAGCGTCAAGTGAATGGTTGTGGGTCGGGCTTCACTGA
ATCTGTACCTCTCCTCTTTCGTGATAAGTTTACATCAAGCTGCAACAAAC
ACGATGTCTGTTATGATTGCGGATTTGCGAGAAACTGGACACGATCGGAC
TGTGATAACACTTTATACCAAGACGCTGTGGATGCTTGTGAGTGCGCTTA
TCCTGGTTTTCTAGCCTCTGCAGAACGTTTAGCATGCAGAGAAATGGCCG
AGTCGATCTATATGGCTGTTCGTGTATTCAGTGAAAGTTACTTTAGTACA
CATATCAAGGACTTTTGTTTGAACGATTGTGTATTGTCATATGGAAGCCC
TAAATTGAGCAATATGGTATGAATGAACACAGTTTTACTCATCCTTTTTT
CAATAACAACTGGAGCATCATGGGTATCCACAATGCATCAGGACCGCATC
AATGCATTGCACGAAGACATGGACGAGGTTGATCCCCATTACTACAAACC
ACTACCATTGCCCTTGAAAGATGCGATAATTTATGTCAAGAAGTATGGTC
CGTATGCAGCAGAAAAGAGAATTAAAGTGAAACGGAGACATAGCAAGAAA
TCGATCAAACTTATGGAATGCAAACAACGTGACCGACCTCCCAaatGTGA
GCGTCAAGTGAATGGTTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCC
TCTTTCGTGATAAGTTTACATCAAGCTGCAACAAACACGATGTCTGTTAT
GATTGCGGATTTGCGAGAAACTGGACACGATCGGACTGTGATAACACTTT
ATACCAAGACGCTGTGGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAG
CCTCTGCAGAACGTTTAGCATGCAGAGAAATGGCCGAGTCGATCTATATG
GCTGTTCGTGTATTCAGTGAAAGTTACTTTAGTACACATATCAAGGACTT
TTGTTTGAACGATTGTGTATTGTCATATGGAAGCCCTAAATTGAGCAATA
TGGTATGAATGAACACAGTTTTACTCATCCTTTTTTCAATAACAACTGGA
GCATCATGGGTATCCACAATGCATCAGGACCGCATCAATGCATTGCACGA
AGACATGGACGAGGTTGATCCCCATTACTACAAACCACTACCATTGCCCT
TGAAAGATGCGATAATTTATGTCAAGAAGTATGGTCCGTATGCAGCAGAA
AAGAGAATTAAAGTGAAACGGAGACATAGCAAGAAATCGATCAAACTTAT
GGAATGCAAACAACGTGACCGACCTCCCAaatGTGAGCGTCAAGTGAATG
GTTGTGGGTCGGGCTTCACTGAATCTGTACCTCTCCTCTTTCGTGATAAG
TTTACATCAAGCTGCAACAAACACGATGTCTGTTATGATTGCGGATTTGC
GAGAAACTGGACACGATCGGACTGTGATAACACTTTATACCAAGACGCTG
TGGATGCTTGTGAGTGCGCTTATCCTGGTTTTCTAGCCTCTGCAGAACGT
TTAGCATGCAGAGAAATGGCCGAGTCGATCTATATGGCTGTTCGTGTATT
CAGTGAAAGTTACTTTAGTACACATATCAAGGACTTTTGTTTGAACGATT
GTGTATTGTCATATGGAAGCCCTAAATTGAGCAATATGGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036531XLOC_036531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057938-exon-scaffold_302-1491911889:378642..378763TCONS_00057938-exon-scaffold_302-1491911889:378642..378763Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1510915933:378642..378763TCONS_00057938-exon-scaffold_302-1510915933:378642..378763Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1575043694:378642..378763TCONS_00057938-exon-scaffold_302-1575043694:378642..378763Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1491911889:378887..379017TCONS_00057938-exon-scaffold_302-1491911889:378887..379017Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1510915933:378887..379017TCONS_00057938-exon-scaffold_302-1510915933:378887..379017Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1575043694:378887..379017TCONS_00057938-exon-scaffold_302-1575043694:378887..379017Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1491911889:379324..379380TCONS_00057938-exon-scaffold_302-1491911889:379324..379380Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1510915933:379324..379380TCONS_00057938-exon-scaffold_302-1510915933:379324..379380Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1575043694:379324..379380TCONS_00057938-exon-scaffold_302-1575043694:379324..379380Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1491911889:379528..379795TCONS_00057938-exon-scaffold_302-1491911889:379528..379795Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1510915933:379528..379795TCONS_00057938-exon-scaffold_302-1510915933:379528..379795Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1575043694:379528..379795TCONS_00057938-exon-scaffold_302-1575043694:379528..379795Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1491911889:381504..381616TCONS_00057938-exon-scaffold_302-1491911889:381504..381616Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1510915933:381504..381616TCONS_00057938-exon-scaffold_302-1510915933:381504..381616Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1575043694:381504..381616TCONS_00057938-exon-scaffold_302-1575043694:381504..381616Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1491911889:382383..383205TCONS_00057938-exon-scaffold_302-1491911889:382383..383205Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1510915933:382383..383205TCONS_00057938-exon-scaffold_302-1510915933:382383..383205Clytia hemisphaericaexon
TCONS_00057938-exon-scaffold_302-1575043694:382383..383205TCONS_00057938-exon-scaffold_302-1575043694:382383..383205Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057938-proteinTCONS_00057938-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:378642..383205 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.644463 0.407016 0.696585 0.462351 0 0 0 0.235848 3.01029 0.515543 0.327504 4.61098 4.61615 3.67508 4.18054 5.60309 0.241056 1.77878 2.14993 2.22759 0.760754 1.6614 0.978933 2.11011 0 0.773741 2.14639 2.93752 0 0.471994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016090PLipase_A2_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004623phospholipase A2 activity
Vocabulary: Biological Process
TermDefinition
GO:0050482arachidonic acid secretion
GO:0006644phospholipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050482 arachidonic acid secretion
biological_process GO:0006644 phospholipid metabolic process
molecular_function GO:0004623 phospholipase A2 activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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