TCONS_00057952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057952
Unique NameTCONS_00057952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057952 ID=TCONS_00057952|Name=TCONS_00057952|organism=Clytia hemisphaerica|type=transcript|length=1904bp
AGGAAGTTAAGGCAGGAAAACAATTACCTATTTAATGTAGACCTATTCCT
CCTTCTTTCTTTTTGGATCATTTACTGCGACGTAATGGTAGAAGACAACC
AGTAAGAAGAGGAAAGCCCCCATGACATTTGCGAAAACAGCAACTTGATG
GTCGGTAATCATTTTGCAGCAGGACCctacaaaacagaaaaaattaacgt
gACTACCTTATAACCTGAGgacttatatatatatatatacagaTGTATTA
AAGGATCAAAAATGTTCACCTGTCTTAGTAGGTTCCAAGGGAGATCAGGA
AATCGTACTGATGCTGTATCAACCAAAATTGCTCGATGAATGAAACAGAA
TCGGAGAGACGTGGAACATCACTTCGACTCGCCTACCCAGGTAAAAGAGA
CAAAAAGAATTTTGCCGCGCAACTAGTGATCGAGACAAGATGATTCTTTT
TCTAAAAGCCATCACtggaaacatcaaaacaaagatcgcAGAAAGCGAAG
GTGGAGGTTCATTTTCAACTTGCTTGTGTGTCAGCTAGACTTCCACCAGA
CGACACCATACCCTCTGTTTTGTGACTCTTCCTCGGTGAATTAAGTACCT
TGAAAGAACAGAGACATGTAACTTACAGACAGTATAAATTCATAGACCAC
TACCAAAGgaATGTCAACACTGTCTCATCAGTTAAGAAGAATGTCTTCAT
CAGGCTCAATAACAAATCTTGATCTTAACTCCAATACCGAGAATGACACA
TCACCATTACGTCAAACTCAAACAGTCAAAACCAAATACTATTTCTTTAA
AGTTTTACAATTTCTTCATTTTGGCGTTGTCATGTTTTACTTGTGGGCAG
GATTGGTTGAGTTCATTAATAATCCACCATTTTTTGATGCATATGGTGAT
GCTCTCACAAATATGAATAAACTACCAGAGGGAATATTTGCGAATGACCC
AAGGCAAAGACAAGCAGGAAATTTGAGATTGATGGATCTTCCAATCCTTC
TCATGTTGCTTGCGTATGCTGGCGTCGCAACATGGCTCAAATATCAAGGG
CTGGCTTGGTTACTAACTTTCTCTATAACCATTGCTTTTATTTTCTTCTG
GGTCGTTAACTTTTGGGCCCAAGGGGCCTTCGATTGGAGATATTACTCAT
CACGGATGTCAGGGTTGGAGCTGCAGGTTTCTGCATTAGCGTTGAGTTGC
ACTAACATATTAATGGTTATGTTTTATAAACGAAGACGTCTTCCTTTCAA
GTTTAAGTCAAGCCTTCCAATCGAACGTCTTGGCTTTTTACATCTCTCCT
TCAACTTTTGTGCAATCTTCCTTATCATGTTCACGTCCATGTTGATGTGG
TTCACTAAAATGTATATTTCATGGGCGTGTTTCAAAGATCAGAATGAGTT
ACTTGGACTTTGTCAAGTGACGAATCAGGTACAATGCTATCCGTGTCAAA
CATGCACAGAAGAAGGAATCAATAAATGTTACAAACGAGAAATTGACGAA
ACGCTCTTCTCGTGCAATACAAAATATCCAAAAGAAGctaaaaagGGAGC
ATTTTGCATCTTCAATTATAACATGAGTACAGTGGAATTCTTAACAATTT
TCGCCTATATTGGAGGACTGTGTGTTTTCCTGAGTAACTTTATCAAATTG
GTTGGACATTACATATTACGTGTGTTATTCATGTTTTACGAATGGTGTTT
AAATCGATGTAATCGAACCAGTCGGATGATTGATAACCACCGACAACGAT
TAGTACAACGTAGACAGTTAAGAGAACACAGGATGAATTGCGATCGGCAA
TTATTAACCGATTCTATATCGCCCATACAGTCACCTAGAGAACTTCATAA
TCCAGTCGGTTCGCCAGGTGGCTCCACTAACGCATCAGGTGGATTAAGTC
CTCG
Run BLAST on NCBI

transcript from alignment at scaffold_302:79109..84196-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057952 ID=TCONS_00057952|Name=TCONS_00057952|organism=Clytia hemisphaerica|type=transcript|length=5088bp|location=Sequence derived from alignment at scaffold_302:79109..84196- (Clytia hemisphaerica)
AGGAAGTTAAGGCAGGAAAACAATTACCTATTTAATGTAGACCTATTCCT
CCTTCTTTCTTTTTGGATCATTTACTGCGACGTAATGGTAGAAGACAACC
AGTAAGAAGAGGAAAGCCCCCATGACATTTGCGAAAACAGCAACTTGATG
GTCGGTAATCATTTTGCAGCAGGACCCTACAAAACAGAAAAAATTAACGT
GACTACCTTATAACCTGAGGACTTATATATATATATATACAGATGTATTA
AAGGATCAAAAATGTTCACCTGTCTTAGTAGGTTCCAAGGGAGATCAGGA
AATCGTACTGATGCTGTATCAACCAAAATTGCTCGATGAATGAAACAGAA
TCGGAGAGACGTGGAACATCACTTCGACTCGCCTACCCAGGTAAAAGAGA
CAAAAAGAATTTTGCCGCGCAACTAGTGATCGAGACAAGATGATTCTTTT
TCTAAAAGCCATCACTGGAAACATCAAAACAAAGATCGCAGAAAGCGAAG
GTGGAGGTTCATTTTCAACTTGCTTGTGTGTCAGCTAGACTTCCACCAGA
CGACACCATACCCTCTGTTTTGTGACTCTTCCTCGGTGAATTAAGTACCT
TGAAAGAACAGAGACATGTAACTTACAGACAGTATAAATTCATAGACCAC
TACCAAAGGTAAGAAATGACAATATGCGTAAAACTTAAAACTGCTAAAAA
CAGAAAAATATGGTGTCGTCGTGCATGTGAGCGAGAGAAGTATTTACTTT
TACTTGTGAACTGAACCCTATACACCCATCAACCTTTAGTTCAATTAGTT
GTCTGTACACAGACCCAGTATCTATGGCTGATTTCAAAATCGATTGCTGT
GGAGGGTTTGTTGTCATTGTCTTTTCTCATTTGAGATTTTTTAAACCAAT
CTCTTGGCTGGCTGGCGGCTGGCTGGCGGCCGGCTGGGATGCTGATGGAG
TGTTGGTGGTGAGGAGAAGGGAGGCAATGAAAACTTTCTTTCATTTTTAT
TTTGCCAGACAAATAAAGATGAGAATATTCATCAGTTGAAGGCATCAAGT
AAAGATGTCAAGAGAAAATTGTAAATAAAGCATCTTTTTTAAAGAAAAGA
CAATAATCTAACTGATTAAAAACCATTCATTTTGTTAGCAATGCAACTTT
TTTATTCAACAAGTAACTTTTATTATTGCTGTGTTGCAAACGTATCCTGT
GGTACCACAGCTACAAAATTCGAAAAAATCAATATTTGCTATGGGGTCAG
AGAATTTTTTTCTGAGTTTTCTGTATGGCAGCACCCATTTTTAGAAATCA
GTTAAAAAATGACTTTCTAGGGTGCTTACATTCTTTATTGTACAACCTGG
TGATCTCGATAGAAAGGAAAGAATTATATTTGGCTGTCTCTCAATTTCTA
TAACCTCACTCTGATGATGTGACAGAGAGGGGTAAAATGTTTTTGGATGA
TAAAAACTGAAACGGTTATTTCTTCATACTTTTTTTTATTTAAAGGAATG
TCAACACTGTCTCATCAGTTAAGAAGAATGTCTTCATCAGGCTCAATAAC
AAATCTTGATCTTAACTCCAATACCGAGAATGACACATCACCATTACGTC
AAACTCAAACAGTCAAAACCAAATACTATTTCTTTAAAGTTTTACAATTT
CTTCATTTTGGCGTTGTCATGTTTTACTTGTGGGCAGGATTGGTTGAGTT
CATTAATAATCCACCATTTTTTGATGCATATGGTGATGCTCTCACAAATA
TGAATAAACTACCAGAGGGAATATTTGCGGTAAGAAATCATTTTCAAATT
ATATATGAAATAAGTTAATTTTTGGATTTTTATTATGAAATCATTTTGAT
GTAAATAAATTGGTACTGTATCTTTTTATTTTGCTTTATCTTTAGAATGA
CCCAAGGCAAAGACAAGCAGTAAGTAAAATTAAAATTACGATATAGAACT
TCTATAAAAATTTGAAAGGTAACTTTATAGTTGTTCCTTCTTTACTTTGA
CCTTCTTTTTATTATGTAATTTTTTAAAGAGCATTATGTCTGGTTTTTAG
GGAAATTTGAGATTGATGGATCTTCCAATCCTTCTCATGTTGCTTGTAAG
TTTCCATCGGATTTTATCAAATTCAATCTATGATATGATTTCGTAATTTA
GCGATGACATATGAAAAGTGTTTTAATCATTGTGCTTGAACATTTTTTTC
ATGAGCAATTTTTCTAACTCAGCAGCGCTGAAAAATCCATACAATGTATC
TCTAGGACTTTTTTATATTTTAATTTATTCGTATAAACTTGCATAGTACC
CCAGCTATTTAAATTTGATTATGATTGTACATCCTTGTATATAATGCGCG
TTTGCAATAAAAGGAAATGAAAATTAAGTAATTAACCACAAAATGACTGC
GCTGTTGTTATTCTTTGTATTTTGTTCATAGGCGTATGCTGGCGTCGCAA
CATGGCTCAAATATCAAGGGCTGGCTTGGTTACTAACTTTCTCTATAACC
ATTGCTTTTATTTTCTTCTGGGTCGTTAACTTTTGGGCCCAAGGGGCCTT
CGATTGGAGGTATCTTTATATATGATTTTTTTTGTTTTTTGGTACATTTT
CCGTTCAGCCTTTGGAATATGCATTTTGATTGATGAAATTTATCAGATTA
TTGTTGACCTCAAAGTATTGAAATAAAGTCCGGTAGAGTTGGTTATAATT
TCACTGAAACCTTGAGAAAAGTCCCAAAAAGCTGAAATTTGGCACAGCTG
TCTCTAATAGGATGACTAACTACCAGAAAAAAAGCCCCGTCCATAGGGCA
TTAGGAAACCATTTTCCGACCGAAAATTGAAAAGGATGCTTTTTTAGGGT
TGTAAAGGCTAGCAAATTTCAGCTTGTTGGGAATTTCCAATGTTAAACGA
TAATTATTCTACTGGATTAATGCAGTCTGTTAGAATTAGTTGGAATTCAA
CTGAAATAATCAGAAAACTAAGTAAAATGTTTTATTCTTTGCCAAGAAAC
GTCTTATTTTATTTATCTAGATATTACTCATCACGGATGTCAGGGTTGGA
GCTGCAGGTTTCTGCATTAGCGTTGAGTTGCACTAACATATTAATGGTTA
TGTTTTATAAACGAAGACGTCTTCCTTTCAAGTTTAAGGTTAGTTAATAA
ATGCTTTGGGACTTACATATGGGAACTTATTTTGATTTATTCACAGTGAA
AAAACCCTAAAAGCTTCACAAAAGAAGATGCTTTGTATAGATCTATCCCT
GAAATAACTTTCAATTTTGAATTACTTTTCAAATTTAAACATTTTGTTTT
AAGCTTTGATGCAAAAATGAACTCTCTGTTATTTCAGTCAAGCCTTCCAA
TCGAACGTCTTGGCTTTTTACATCTCTCCTTCAACTTTTGTGCAATCTTC
CTTATCATGTTCACGTCCATGTTGATGTGGTTCACTAAAATGTATATTTC
ATGGGCGTGTTTCAAAGATCAGAATGAGTTACTTGGACTTTGTCAAGTGA
CGAATCAGGTTAGTTAAAGTTGTACAACTTTATATTTGTACAAACCTATT
TGTCATGAAATGGTTCCTGCAAACACCTCGCCTTACTGAGTAAGAAATGA
TTTAAGTCACTTCTGTAATCTAGATAGGGGCTTAACTTCTGAGTATTTTT
CTCACTGGCAACGAATTTAATGTAATTGTTCATTTTTCCTAAGTGTTCCA
CAGTAACCGAGACACCTGGTTGATACACCCCTCTCACAGACCTGGTGGGA
CCCCTTCCCACTGGGAAAATTGACCTATGACAATAATCAAATAATTAAAT
CCTCACTGCAAAATAGTGTGCTATTTTTTCCATCCCAATTTCTGACGCGA
AAACAATGGATTTTAAAATCCCCAGCTATAAAAAAGCATGGGAATATCAA
TTTATCAGTCATTTTTATTCCGGCTGACTGACAAAATACTACCAAGTTTA
TGAGAAAGGGGTGTGTTGATCCATTTTAAGAACTCCTTATACTTGGTCTG
CGTCTCTGAAGTTGCACCGATATAGGTTTTTTTCTTTCCAACGTTCAGGT
ACAATGCTATCCGTGTCAAACATGCACAGAAGAAGGAATCAATAAATGTT
ACAAACGAGAAATTGACGAAACGCTCTTCTCGTGCAATACAAAATATCCA
AAAGAAGCTAAAAAGGTAAAAAGAATCAACTATTCTAATATGTCACTGTA
TAGGTGAACAACCGCTAAACAATCAATTATACCAAGGATCGACTTACCTC
TCGTAAAATGATACCACGGCGTAAAAAACAACCCTAAATTTTCAATTTTG
GGATCATTTGCATCATTAAGTCTATGTAAAATCTTTTCAAAATGTTGACT
TTGCGTTGCATTTCATTTTGCAGGGAGCATTTTGCATCTTCAATTATAAC
ATGAGTACAGTGGAATTCTTAACAAGTAAGTACATTCTTATATTTTTTTT
CGCTCGCAATACTTAATTAGTGCACGATTTAACGTCCATTATTCCTAGCA
GCTGGAGTTGGAGATAATCCTCAGATGATTGTACGCTAGGCTGTTCTATC
ATCAGCCATGTCGAGAGTTGCATTTATCAAGTTGATGTATGGTAACGAAT
AAAATAATGGTAACGAATTGACAAACTTGATCTTCAAACTTATTATAAGG
CAAAGAGAATGGAAACCGAAATAAAAGAAACATTATATTTAAGATTGATC
AAAACTTTGAGGCTTATTTAAGCCTTATTTCTTTGATTAAGGCAAACTAT
GTGATGACATTTGTACAATTTTTCGTTTAAGTTTTCGCCTATATTGGAGG
ACTGTGTGTTTTCCTGAGTAACTTTATCAAATTGGTTGGACATTACATAT
TACGTGTGTTATTCATGTTTTACGAATGGTGTTTAAATCGATGTAATCGA
ACCAGTCGGATGATTGATAACCACCGACAACGATTAGTACAACGTAGACA
GTTAAGAGAACACAGGATGAATTGCGATCGGCAATTATTAACCGATTCTA
TATCGCCCATACAGTCACCTAGAGAACTTCATAATCCAGTCGGTTCGCCA
GGTGGCTCCACTAACGCATCAGGTGGATTAAGTCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036535XLOC_036535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057952-exon-scaffold_302-1575043694:83539..84196TCONS_00057952-exon-scaffold_302-1575043694:83539..84196Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:82418..82701TCONS_00057952-exon-scaffold_302-1575043694:82418..82701Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:82278..82301TCONS_00057952-exon-scaffold_302-1575043694:82278..82301Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:82102..82146TCONS_00057952-exon-scaffold_302-1575043694:82102..82146Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:81638..81765TCONS_00057952-exon-scaffold_302-1575043694:81638..81765Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:81059..81176TCONS_00057952-exon-scaffold_302-1575043694:81059..81176Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:80689..80859TCONS_00057952-exon-scaffold_302-1575043694:80689..80859Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:80032..80148TCONS_00057952-exon-scaffold_302-1575043694:80032..80148Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:79772..79823TCONS_00057952-exon-scaffold_302-1575043694:79772..79823Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:79109..79415TCONS_00057952-exon-scaffold_302-1575043694:79109..79415Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:83539..84196TCONS_00057952-exon-scaffold_302-1510915933:83539..84196Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:82418..82701TCONS_00057952-exon-scaffold_302-1510915933:82418..82701Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:82278..82301TCONS_00057952-exon-scaffold_302-1510915933:82278..82301Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:82102..82146TCONS_00057952-exon-scaffold_302-1510915933:82102..82146Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:81638..81765TCONS_00057952-exon-scaffold_302-1510915933:81638..81765Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:81059..81176TCONS_00057952-exon-scaffold_302-1510915933:81059..81176Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:80689..80859TCONS_00057952-exon-scaffold_302-1510915933:80689..80859Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:80032..80148TCONS_00057952-exon-scaffold_302-1510915933:80032..80148Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:79772..79823TCONS_00057952-exon-scaffold_302-1510915933:79772..79823Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:79109..79415TCONS_00057952-exon-scaffold_302-1510915933:79109..79415Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:83539..84196TCONS_00057952-exon-scaffold_302-1491911889:83539..84196Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:82418..82701TCONS_00057952-exon-scaffold_302-1491911889:82418..82701Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:82278..82301TCONS_00057952-exon-scaffold_302-1491911889:82278..82301Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:82102..82146TCONS_00057952-exon-scaffold_302-1491911889:82102..82146Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:81638..81765TCONS_00057952-exon-scaffold_302-1491911889:81638..81765Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:81059..81176TCONS_00057952-exon-scaffold_302-1491911889:81059..81176Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:80689..80859TCONS_00057952-exon-scaffold_302-1491911889:80689..80859Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:80032..80148TCONS_00057952-exon-scaffold_302-1491911889:80032..80148Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:79772..79823TCONS_00057952-exon-scaffold_302-1491911889:79772..79823Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:79109..79415TCONS_00057952-exon-scaffold_302-1491911889:79109..79415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:79109..84196 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.1823	43.2605	43.9929	56.7694	29.6661	25.6615	41.24	46.5736	40.8134	34.1067	32.2579	36.5283	26.88	27.9134	27.443	31.1444	34.4636	33.5066	21.9378	23.0821	28.9237	27.242	42.8132	42.3643	22.8995	23.8468	31.2809	25.0852	42.0936	39.8189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top