TCONS_00057952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057952
Unique NameTCONS_00057952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057952 ID=TCONS_00057952|Name=TCONS_00057952|organism=Clytia hemisphaerica|type=transcript|length=1904bp
AGGAAGTTAAGGCAGGAAAACAATTACCTATTTAATGTAGACCTATTCCT
CCTTCTTTCTTTTTGGATCATTTACTGCGACGTAATGGTAGAAGACAACC
AGTAAGAAGAGGAAAGCCCCCATGACATTTGCGAAAACAGCAACTTGATG
GTCGGTAATCATTTTGCAGCAGGACCctacaaaacagaaaaaattaacgt
gACTACCTTATAACCTGAGgacttatatatatatatatacagaTGTATTA
AAGGATCAAAAATGTTCACCTGTCTTAGTAGGTTCCAAGGGAGATCAGGA
AATCGTACTGATGCTGTATCAACCAAAATTGCTCGATGAATGAAACAGAA
TCGGAGAGACGTGGAACATCACTTCGACTCGCCTACCCAGGTAAAAGAGA
CAAAAAGAATTTTGCCGCGCAACTAGTGATCGAGACAAGATGATTCTTTT
TCTAAAAGCCATCACtggaaacatcaaaacaaagatcgcAGAAAGCGAAG
GTGGAGGTTCATTTTCAACTTGCTTGTGTGTCAGCTAGACTTCCACCAGA
CGACACCATACCCTCTGTTTTGTGACTCTTCCTCGGTGAATTAAGTACCT
TGAAAGAACAGAGACATGTAACTTACAGACAGTATAAATTCATAGACCAC
TACCAAAGgaATGTCAACACTGTCTCATCAGTTAAGAAGAATGTCTTCAT
CAGGCTCAATAACAAATCTTGATCTTAACTCCAATACCGAGAATGACACA
TCACCATTACGTCAAACTCAAACAGTCAAAACCAAATACTATTTCTTTAA
AGTTTTACAATTTCTTCATTTTGGCGTTGTCATGTTTTACTTGTGGGCAG
GATTGGTTGAGTTCATTAATAATCCACCATTTTTTGATGCATATGGTGAT
GCTCTCACAAATATGAATAAACTACCAGAGGGAATATTTGCGAATGACCC
AAGGCAAAGACAAGCAGGAAATTTGAGATTGATGGATCTTCCAATCCTTC
TCATGTTGCTTGCGTATGCTGGCGTCGCAACATGGCTCAAATATCAAGGG
CTGGCTTGGTTACTAACTTTCTCTATAACCATTGCTTTTATTTTCTTCTG
GGTCGTTAACTTTTGGGCCCAAGGGGCCTTCGATTGGAGATATTACTCAT
CACGGATGTCAGGGTTGGAGCTGCAGGTTTCTGCATTAGCGTTGAGTTGC
ACTAACATATTAATGGTTATGTTTTATAAACGAAGACGTCTTCCTTTCAA
GTTTAAGTCAAGCCTTCCAATCGAACGTCTTGGCTTTTTACATCTCTCCT
TCAACTTTTGTGCAATCTTCCTTATCATGTTCACGTCCATGTTGATGTGG
TTCACTAAAATGTATATTTCATGGGCGTGTTTCAAAGATCAGAATGAGTT
ACTTGGACTTTGTCAAGTGACGAATCAGGTACAATGCTATCCGTGTCAAA
CATGCACAGAAGAAGGAATCAATAAATGTTACAAACGAGAAATTGACGAA
ACGCTCTTCTCGTGCAATACAAAATATCCAAAAGAAGctaaaaagGGAGC
ATTTTGCATCTTCAATTATAACATGAGTACAGTGGAATTCTTAACAATTT
TCGCCTATATTGGAGGACTGTGTGTTTTCCTGAGTAACTTTATCAAATTG
GTTGGACATTACATATTACGTGTGTTATTCATGTTTTACGAATGGTGTTT
AAATCGATGTAATCGAACCAGTCGGATGATTGATAACCACCGACAACGAT
TAGTACAACGTAGACAGTTAAGAGAACACAGGATGAATTGCGATCGGCAA
TTATTAACCGATTCTATATCGCCCATACAGTCACCTAGAGAACTTCATAA
TCCAGTCGGTTCGCCAGGTGGCTCCACTAACGCATCAGGTGGATTAAGTC
CTCG
Run BLAST on NCBI

transcript from alignment at scaffold_302:79109..84196-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057952 ID=TCONS_00057952|Name=TCONS_00057952|organism=Clytia hemisphaerica|type=transcript|length=5088bp|location=Sequence derived from alignment at scaffold_302:79109..84196- (Clytia hemisphaerica)
AGGAAGTTAAGGCAGGAAAACAATTACCTATTTAATGTAGACCTATTCCT CCTTCTTTCTTTTTGGATCATTTACTGCGACGTAATGGTAGAAGACAACC AGTAAGAAGAGGAAAGCCCCCATGACATTTGCGAAAACAGCAACTTGATG GTCGGTAATCATTTTGCAGCAGGACCCTACAAAACAGAAAAAATTAACGT GACTACCTTATAACCTGAGGACTTATATATATATATATACAGATGTATTA AAGGATCAAAAATGTTCACCTGTCTTAGTAGGTTCCAAGGGAGATCAGGA AATCGTACTGATGCTGTATCAACCAAAATTGCTCGATGAATGAAACAGAA TCGGAGAGACGTGGAACATCACTTCGACTCGCCTACCCAGGTAAAAGAGA CAAAAAGAATTTTGCCGCGCAACTAGTGATCGAGACAAGATGATTCTTTT TCTAAAAGCCATCACTGGAAACATCAAAACAAAGATCGCAGAAAGCGAAG GTGGAGGTTCATTTTCAACTTGCTTGTGTGTCAGCTAGACTTCCACCAGA CGACACCATACCCTCTGTTTTGTGACTCTTCCTCGGTGAATTAAGTACCT TGAAAGAACAGAGACATGTAACTTACAGACAGTATAAATTCATAGACCAC TACCAAAGGTAAGAAATGACAATATGCGTAAAACTTAAAACTGCTAAAAA CAGAAAAATATGGTGTCGTCGTGCATGTGAGCGAGAGAAGTATTTACTTT TACTTGTGAACTGAACCCTATACACCCATCAACCTTTAGTTCAATTAGTT GTCTGTACACAGACCCAGTATCTATGGCTGATTTCAAAATCGATTGCTGT GGAGGGTTTGTTGTCATTGTCTTTTCTCATTTGAGATTTTTTAAACCAAT CTCTTGGCTGGCTGGCGGCTGGCTGGCGGCCGGCTGGGATGCTGATGGAG TGTTGGTGGTGAGGAGAAGGGAGGCAATGAAAACTTTCTTTCATTTTTAT TTTGCCAGACAAATAAAGATGAGAATATTCATCAGTTGAAGGCATCAAGT AAAGATGTCAAGAGAAAATTGTAAATAAAGCATCTTTTTTAAAGAAAAGA CAATAATCTAACTGATTAAAAACCATTCATTTTGTTAGCAATGCAACTTT TTTATTCAACAAGTAACTTTTATTATTGCTGTGTTGCAAACGTATCCTGT GGTACCACAGCTACAAAATTCGAAAAAATCAATATTTGCTATGGGGTCAG AGAATTTTTTTCTGAGTTTTCTGTATGGCAGCACCCATTTTTAGAAATCA GTTAAAAAATGACTTTCTAGGGTGCTTACATTCTTTATTGTACAACCTGG TGATCTCGATAGAAAGGAAAGAATTATATTTGGCTGTCTCTCAATTTCTA TAACCTCACTCTGATGATGTGACAGAGAGGGGTAAAATGTTTTTGGATGA TAAAAACTGAAACGGTTATTTCTTCATACTTTTTTTTATTTAAAGGAATG TCAACACTGTCTCATCAGTTAAGAAGAATGTCTTCATCAGGCTCAATAAC AAATCTTGATCTTAACTCCAATACCGAGAATGACACATCACCATTACGTC AAACTCAAACAGTCAAAACCAAATACTATTTCTTTAAAGTTTTACAATTT CTTCATTTTGGCGTTGTCATGTTTTACTTGTGGGCAGGATTGGTTGAGTT CATTAATAATCCACCATTTTTTGATGCATATGGTGATGCTCTCACAAATA TGAATAAACTACCAGAGGGAATATTTGCGGTAAGAAATCATTTTCAAATT ATATATGAAATAAGTTAATTTTTGGATTTTTATTATGAAATCATTTTGAT GTAAATAAATTGGTACTGTATCTTTTTATTTTGCTTTATCTTTAGAATGA CCCAAGGCAAAGACAAGCAGTAAGTAAAATTAAAATTACGATATAGAACT TCTATAAAAATTTGAAAGGTAACTTTATAGTTGTTCCTTCTTTACTTTGA CCTTCTTTTTATTATGTAATTTTTTAAAGAGCATTATGTCTGGTTTTTAG GGAAATTTGAGATTGATGGATCTTCCAATCCTTCTCATGTTGCTTGTAAG TTTCCATCGGATTTTATCAAATTCAATCTATGATATGATTTCGTAATTTA GCGATGACATATGAAAAGTGTTTTAATCATTGTGCTTGAACATTTTTTTC ATGAGCAATTTTTCTAACTCAGCAGCGCTGAAAAATCCATACAATGTATC TCTAGGACTTTTTTATATTTTAATTTATTCGTATAAACTTGCATAGTACC CCAGCTATTTAAATTTGATTATGATTGTACATCCTTGTATATAATGCGCG TTTGCAATAAAAGGAAATGAAAATTAAGTAATTAACCACAAAATGACTGC GCTGTTGTTATTCTTTGTATTTTGTTCATAGGCGTATGCTGGCGTCGCAA CATGGCTCAAATATCAAGGGCTGGCTTGGTTACTAACTTTCTCTATAACC ATTGCTTTTATTTTCTTCTGGGTCGTTAACTTTTGGGCCCAAGGGGCCTT CGATTGGAGGTATCTTTATATATGATTTTTTTTGTTTTTTGGTACATTTT CCGTTCAGCCTTTGGAATATGCATTTTGATTGATGAAATTTATCAGATTA TTGTTGACCTCAAAGTATTGAAATAAAGTCCGGTAGAGTTGGTTATAATT TCACTGAAACCTTGAGAAAAGTCCCAAAAAGCTGAAATTTGGCACAGCTG TCTCTAATAGGATGACTAACTACCAGAAAAAAAGCCCCGTCCATAGGGCA TTAGGAAACCATTTTCCGACCGAAAATTGAAAAGGATGCTTTTTTAGGGT TGTAAAGGCTAGCAAATTTCAGCTTGTTGGGAATTTCCAATGTTAAACGA TAATTATTCTACTGGATTAATGCAGTCTGTTAGAATTAGTTGGAATTCAA CTGAAATAATCAGAAAACTAAGTAAAATGTTTTATTCTTTGCCAAGAAAC GTCTTATTTTATTTATCTAGATATTACTCATCACGGATGTCAGGGTTGGA GCTGCAGGTTTCTGCATTAGCGTTGAGTTGCACTAACATATTAATGGTTA TGTTTTATAAACGAAGACGTCTTCCTTTCAAGTTTAAGGTTAGTTAATAA ATGCTTTGGGACTTACATATGGGAACTTATTTTGATTTATTCACAGTGAA AAAACCCTAAAAGCTTCACAAAAGAAGATGCTTTGTATAGATCTATCCCT GAAATAACTTTCAATTTTGAATTACTTTTCAAATTTAAACATTTTGTTTT AAGCTTTGATGCAAAAATGAACTCTCTGTTATTTCAGTCAAGCCTTCCAA TCGAACGTCTTGGCTTTTTACATCTCTCCTTCAACTTTTGTGCAATCTTC CTTATCATGTTCACGTCCATGTTGATGTGGTTCACTAAAATGTATATTTC ATGGGCGTGTTTCAAAGATCAGAATGAGTTACTTGGACTTTGTCAAGTGA CGAATCAGGTTAGTTAAAGTTGTACAACTTTATATTTGTACAAACCTATT TGTCATGAAATGGTTCCTGCAAACACCTCGCCTTACTGAGTAAGAAATGA TTTAAGTCACTTCTGTAATCTAGATAGGGGCTTAACTTCTGAGTATTTTT CTCACTGGCAACGAATTTAATGTAATTGTTCATTTTTCCTAAGTGTTCCA CAGTAACCGAGACACCTGGTTGATACACCCCTCTCACAGACCTGGTGGGA CCCCTTCCCACTGGGAAAATTGACCTATGACAATAATCAAATAATTAAAT CCTCACTGCAAAATAGTGTGCTATTTTTTCCATCCCAATTTCTGACGCGA AAACAATGGATTTTAAAATCCCCAGCTATAAAAAAGCATGGGAATATCAA TTTATCAGTCATTTTTATTCCGGCTGACTGACAAAATACTACCAAGTTTA TGAGAAAGGGGTGTGTTGATCCATTTTAAGAACTCCTTATACTTGGTCTG CGTCTCTGAAGTTGCACCGATATAGGTTTTTTTCTTTCCAACGTTCAGGT ACAATGCTATCCGTGTCAAACATGCACAGAAGAAGGAATCAATAAATGTT ACAAACGAGAAATTGACGAAACGCTCTTCTCGTGCAATACAAAATATCCA AAAGAAGCTAAAAAGGTAAAAAGAATCAACTATTCTAATATGTCACTGTA TAGGTGAACAACCGCTAAACAATCAATTATACCAAGGATCGACTTACCTC TCGTAAAATGATACCACGGCGTAAAAAACAACCCTAAATTTTCAATTTTG GGATCATTTGCATCATTAAGTCTATGTAAAATCTTTTCAAAATGTTGACT TTGCGTTGCATTTCATTTTGCAGGGAGCATTTTGCATCTTCAATTATAAC ATGAGTACAGTGGAATTCTTAACAAGTAAGTACATTCTTATATTTTTTTT CGCTCGCAATACTTAATTAGTGCACGATTTAACGTCCATTATTCCTAGCA GCTGGAGTTGGAGATAATCCTCAGATGATTGTACGCTAGGCTGTTCTATC ATCAGCCATGTCGAGAGTTGCATTTATCAAGTTGATGTATGGTAACGAAT AAAATAATGGTAACGAATTGACAAACTTGATCTTCAAACTTATTATAAGG CAAAGAGAATGGAAACCGAAATAAAAGAAACATTATATTTAAGATTGATC AAAACTTTGAGGCTTATTTAAGCCTTATTTCTTTGATTAAGGCAAACTAT GTGATGACATTTGTACAATTTTTCGTTTAAGTTTTCGCCTATATTGGAGG ACTGTGTGTTTTCCTGAGTAACTTTATCAAATTGGTTGGACATTACATAT TACGTGTGTTATTCATGTTTTACGAATGGTGTTTAAATCGATGTAATCGA ACCAGTCGGATGATTGATAACCACCGACAACGATTAGTACAACGTAGACA GTTAAGAGAACACAGGATGAATTGCGATCGGCAATTATTAACCGATTCTA TATCGCCCATACAGTCACCTAGAGAACTTCATAATCCAGTCGGTTCGCCA GGTGGCTCCACTAACGCATCAGGTGGATTAAGTCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036535XLOC_036535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057952-exon-scaffold_302-1575043694:83539..84196TCONS_00057952-exon-scaffold_302-1575043694:83539..84196Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:82418..82701TCONS_00057952-exon-scaffold_302-1575043694:82418..82701Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:82278..82301TCONS_00057952-exon-scaffold_302-1575043694:82278..82301Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:82102..82146TCONS_00057952-exon-scaffold_302-1575043694:82102..82146Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:81638..81765TCONS_00057952-exon-scaffold_302-1575043694:81638..81765Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:81059..81176TCONS_00057952-exon-scaffold_302-1575043694:81059..81176Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:80689..80859TCONS_00057952-exon-scaffold_302-1575043694:80689..80859Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:80032..80148TCONS_00057952-exon-scaffold_302-1575043694:80032..80148Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:79772..79823TCONS_00057952-exon-scaffold_302-1575043694:79772..79823Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1575043694:79109..79415TCONS_00057952-exon-scaffold_302-1575043694:79109..79415Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:83539..84196TCONS_00057952-exon-scaffold_302-1510915933:83539..84196Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:82418..82701TCONS_00057952-exon-scaffold_302-1510915933:82418..82701Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:82278..82301TCONS_00057952-exon-scaffold_302-1510915933:82278..82301Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:82102..82146TCONS_00057952-exon-scaffold_302-1510915933:82102..82146Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:81638..81765TCONS_00057952-exon-scaffold_302-1510915933:81638..81765Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:81059..81176TCONS_00057952-exon-scaffold_302-1510915933:81059..81176Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:80689..80859TCONS_00057952-exon-scaffold_302-1510915933:80689..80859Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:80032..80148TCONS_00057952-exon-scaffold_302-1510915933:80032..80148Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:79772..79823TCONS_00057952-exon-scaffold_302-1510915933:79772..79823Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1510915933:79109..79415TCONS_00057952-exon-scaffold_302-1510915933:79109..79415Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:83539..84196TCONS_00057952-exon-scaffold_302-1491911889:83539..84196Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:82418..82701TCONS_00057952-exon-scaffold_302-1491911889:82418..82701Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:82278..82301TCONS_00057952-exon-scaffold_302-1491911889:82278..82301Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:82102..82146TCONS_00057952-exon-scaffold_302-1491911889:82102..82146Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:81638..81765TCONS_00057952-exon-scaffold_302-1491911889:81638..81765Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:81059..81176TCONS_00057952-exon-scaffold_302-1491911889:81059..81176Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:80689..80859TCONS_00057952-exon-scaffold_302-1491911889:80689..80859Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:80032..80148TCONS_00057952-exon-scaffold_302-1491911889:80032..80148Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:79772..79823TCONS_00057952-exon-scaffold_302-1491911889:79772..79823Clytia hemisphaericaexon
TCONS_00057952-exon-scaffold_302-1491911889:79109..79415TCONS_00057952-exon-scaffold_302-1491911889:79109..79415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:79109..84196 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.1823 43.2605 43.9929 56.7694 29.6661 25.6615 41.24 46.5736 40.8134 34.1067 32.2579 36.5283 26.88 27.9134 27.443 31.1444 34.4636 33.5066 21.9378 23.0821 28.9237 27.242 42.8132 42.3643 22.8995 23.8468 31.2809 25.0852 42.0936 39.8189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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