TCONS_00057965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057965
Unique NameTCONS_00057965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=transcript|length=965bp
tagaatgttatttttctttatagtGATTACAAATTTATAactattataaa
aaatatattgaaagaTGTTTGTAAATGATTAATTGACAGAATGCCAGACA
ATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACA
CAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGT
CAAGTTTGGTGATCAATCAGATCTCAAGAGTATTATTGAAATTGTCATCA
GAAGACTAGGTGCTAATATTccattgacttcaaaatattatgGCATCAAA
TTACAAAACtcagaaacaaaaaatttccacTGGCTTAATCCTTCATTGAC
CATGATTGAAATCAAATCCAAACATCGCCATGAAAACACAGATGATACAT
GGAAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCAAAGACTTG
TATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAAGTGCGTCA
TGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTC
AACTTggtgttttggaaatgaaacgATTCTTCAATAACATGCCACAAGTG
GCTTTGGATAAGAAATCAAATCTCGATTTTATCGAGAAAGAAATTGGTCT
GCAAAGATTNNNNNNNNNNNNNNNNttataatttacttttaccgagattt
tcttcagatttttggttgtagactggataaagtctatgaaggctggatgt
acctcgaaaccaatatttgatgtatttgatgaattttacaagattttttg
gcttttttcgacaaattttcttccttttaatgtAATTCAACTATCCTTTA
tttaacaaaaggtcatttagacaactaattgtaatttttgatgactAAAA
CGAAACtactgatgcatcatgtaattatgcttctttttgatttgataggt
caatttttaacgttt
Run BLAST on NCBI

protein sequence of TCONS_00057965-protein

>TCONS_00057965-protein ID=TCONS_00057965-protein|Name=TCONS_00057965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MPDNNNGIGAPISPTRIDQTQRQSLHVFLPNGEFRAVKFGDQSDLKSIIE
IVIRRLGANIPLTSKYYGIKLQNSETKNFHWLNPSLTMIEIKSKHRHENT
DDTWKYKLRIRYLPVVIKDLYGVDKTTFYFLYDQVRHDYMNEIANSVDID
LAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKEIGLQRXXXXXXL
Run BLAST on NCBI

transcript from alignment at scaffold_302:139349..141158-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=transcript|length=1810bp|location=Sequence derived from alignment at scaffold_302:139349..141158- (Clytia hemisphaerica)
TAGAATGTTATTTTTCTTTATAGTGATTACAAATTTATAACTATTATAAA
AAATATATTGAAAGATGTTTGTAAATGATTAATTGACAGAATGCCAGACA
ATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACA
CAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGT
CAAGTTTGGTGATCAATCAGATCTCAAGGTAACATTGTATCCTTGCTTTA
GTATGTTATTTCATATTTCTCTGCAGACCACTTTTCACACCATTCTAAGC
ACCAGCCAAACACCCTCTTCATGGAATATGGTAAAATAACAGCTGAATTA
CATTCCCTCTTTGGCATAGTTAACGCTGTCTGACCTTTCATGAATATGAC
CAGGTTTGTATTGCACTGTAATGAAAGGAATTAAAAACATTGTGATGATG
TGGTGGGCATTTCTATATGTAAGATTACTTGCAACTTTTTCTTTCAGAGT
ATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGACTTC
AAAATATTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCCACT
GGCTTAATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGCCAT
GAAAACACAGATGATACATGGAAGTAAGTTGTATTAAATTGAAGACTTAA
AAGGAATTCTCATTGCAGAACTATAACAAAGCCTTGACTTGGCTTCTGAA
AGGTATTCTTTTATTTCTGTTTAAGGTGCTTCCAGACAATTTTATACCCC
TCTTACTTGTAAATTTTGATATATTCATTTGTAACATTAATTGATTTTGA
ATTCCCCATTTTAGATACAAGCTAAGAATCCGATATTTGCCAGTCGTAAT
CAAAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATC
AAGTAAGTTAACAAAACAATAAAATGTTCATCATTTTACGCTTTGTACAC
ATGGAGTATTTACTGTCCTGAGATGACTGTAGCATTTTTAGGTCAAGTTC
TTAACTGTTTATTAGCATAGGACAATAAATGTAGAATATTACCCTGGGAT
TATAATTTGAATTGTAAGTTATAAATGAAATAAAATCAAATTAGTATACT
CACGTCCCTTTTTAGGACAGCCAGATGAATAATTGCATCAGATTGTTCTT
TCTTAACGCAGTTTGATATATATTTTTAGGTGCGTCATGATTATATGAAT
GAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTT
GGAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGA
AATCAAATCTCGATTTTATCGAGTAAGAATTTTTCTAATGAATTTTCTTT
TTCTTTGAGAAACCTGTTGTTAATGTGTTTCATAATGATATATTTTAAAG
ATTAATATGTTTCATTTGAATTTCTTACAGGAAAGAAATTGGTCTGCAAA
GATTNNNNNNNNNNNNNNNNTTATAATTTACTTTTACCGAGATTTTCTTC
AGATTTTTGGTTGTAGACTGGATAAAGTCTATGAAGGCTGGATGTACCTC
GAAACCAATATTTGATGTATTTGATGAATTTTACAAGATTTTTTGGCTTT
TTTCGACAAATTTTCTTCCTTTTAATGTAATTCAACTATCCTTTATTTAA
CAAAAGGTCATTTAGACAACTAATTGTAATTTTTGATGACTAAAACGAAA
CTACTGATGCATCATGTAATTATGCTTCTTTTTGATTTGATAGGTCAATT
TTTAACGTTT

Coding sequence (CDS) from alignment at scaffold_302:139349..141158-

>TCONS_00057965 ID=TCONS_00057965|Name=TCONS_00057965|organism=Clytia hemisphaerica|type=CDS|length=2955bp|location=Sequence derived from alignment at scaffold_302:139349..141158- (Clytia hemisphaerica)
GAAAGAAATTGGTCTGCAAAGATTNNNNNNNNNNNNNNNNTTATAAGTGC
GTCATGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCA
TTTCAACTTGGTGTTTTGGAAATGAAACGATTCTTCAATAACATGCCACA
AGTGGCTTTGGATAAGAAATCAAATCTCGATTTTATCGAATACAAGCTAA
GAATCCGATATTTGCCAGTCGTAATCAAAGACTTGTATGGTGTTGACAAA
ACGACTTTCTATTTCCTCTATGATCAAAGTATTATTGAAATTGTCATCAG
AAGACTAGGTGCTAATATTCCATTGACTTCAAAATATTATGGCATCAAAT
TACAAAACTCAGAAACAAAAAATTTCCACTGGCTTAATCCTTCATTGACC
ATGATTGAAATCAAATCCAAACATCGCCATGAAAACACAGATGATACATG
GAAATGCCAGACAATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAG
GATTGATCAAACACAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAG
AATTCAGAGCTGTCAAGTTTGGTGATCAATCAGATCTCAAGGAAAGAAAT
TGGTCTGCAAAGATTNNNNNNNNNNNNNNNNTTATAAGTGCGTCATGATT
ATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTT
GGTGTTTTGGAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTT
GGATAAGAAATCAAATCTCGATTTTATCGAATACAAGCTAAGAATCCGAT
ATTTGCCAGTCGTAATCAAAGACTTGTATGGTGTTGACAAAACGACTTTC
TATTTCCTCTATGATCAAAGTATTATTGAAATTGTCATCAGAAGACTAGG
TGCTAATATTCCATTGACTTCAAAATATTATGGCATCAAATTACAAAACT
CAGAAACAAAAAATTTCCACTGGCTTAATCCTTCATTGACCATGATTGAA
ATCAAATCCAAACATCGCCATGAAAACACAGATGATACATGGAAATGCCA
GACAATAATAACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCA
AACACAACGTCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAG
CTGTCAAGTTTGGTGATCAATCAGATCTCAAGGAAAGAAATTGGTCTGCA
AAGATTNNNNNNNNNNNNNNNNTTATAAGTGCGTCATGATTATATGAATG
AAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTTG
GAAATGAAACGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAA
ATCAAATCTCGATTTTATCGAATACAAGCTAAGAATCCGATATTTGCCAG
TCGTAATCAAAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTC
TATGATCAAAGTATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATAT
TCCATTGACTTCAAAATATTATGGCATCAAATTACAAAACTCAGAAACAA
AAAATTTCCACTGGCTTAATCCTTCATTGACCATGATTGAAATCAAATCC
AAACATCGCCATGAAAACACAGATGATACATGGAAATGCCAGACAATAAT
AACGGCATTGGTGCCCCGATCAGCCCAACTAGGATTGATCAAACACAACG
TCAATCTCTGCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGTCAAGT
TTGGTGATCAATCAGATCTCAAGGAAAGAAATTGGTCTGCAAAGATTNNN
NNNNNNNNNNNNNTTATAAGTGCGTCATGATTATATGAATGAAATTGCTA
ATAGTGTGGACATTGATCTGGCATTTCAACTTGGTGTTTTGGAAATGAAA
CGATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCT
CGATTTTATCGAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCA
AAGACTTGTATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAA
AGTATTATTGAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGAC
TTCAAAATATTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCC
ACTGGCTTAATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGC
CATGAAAACACAGATGATACATGGAAATGCCAGACAATAATAACGGCATT
GGTGCCCCGATCAGCCCAACTAGGATTGATCAAACACAACGTCAATCTCT
GCATGTTTTTTTACCAAATGGAGAATTCAGAGCTGTCAAGTTTGGTGATC
AATCAGATCTCAAGGAAAGAAATTGGTCTGCAAAGATTNNNNNNNNNNNN
NNNNTTATAAGTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGG
ACATTGATCTGGCATTTCAACTTGGTGTTTTGGAAATGAAACGATTCTTC
AATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTAT
CGAATACAAGCTAAGAATCCGATATTTGCCAGTCGTAATCAAAGACTTGT
ATGGTGTTGACAAAACGACTTTCTATTTCCTCTATGATCAAAGTATTATT
GAAATTGTCATCAGAAGACTAGGTGCTAATATTCCATTGACTTCAAAATA
TTATGGCATCAAATTACAAAACTCAGAAACAAAAAATTTCCACTGGCTTA
ATCCTTCATTGACCATGATTGAAATCAAATCCAAACATCGCCATGAAAAC
ACAGATGATACATGGAAATGCCAGACAATAATAACGGCATTGGTGCCCCG
ATCAGCCCAACTAGGATTGATCAAACACAACGTCAATCTCTGCATGTTTT
TTTACCAAATGGAGAATTCAGAGCTGTCAAGTTTGGTGATCAATCAGATC
TCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036538XLOC_036538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057965-exon-scaffold_302-1575043694:140931..141158TCONS_00057965-exon-scaffold_302-1575043694:140931..141158Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:140486..140661TCONS_00057965-exon-scaffold_302-1575043694:140486..140661Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:140207..140294TCONS_00057965-exon-scaffold_302-1575043694:140207..140294Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:139787..139929TCONS_00057965-exon-scaffold_302-1575043694:139787..139929Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1575043694:139349..139678TCONS_00057965-exon-scaffold_302-1575043694:139349..139678Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:140931..141158TCONS_00057965-exon-scaffold_302-1510915933:140931..141158Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:140486..140661TCONS_00057965-exon-scaffold_302-1510915933:140486..140661Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:140207..140294TCONS_00057965-exon-scaffold_302-1510915933:140207..140294Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:139787..139929TCONS_00057965-exon-scaffold_302-1510915933:139787..139929Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1510915933:139349..139678TCONS_00057965-exon-scaffold_302-1510915933:139349..139678Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:140931..141158TCONS_00057965-exon-scaffold_302-1491911889:140931..141158Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:140486..140661TCONS_00057965-exon-scaffold_302-1491911889:140486..140661Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:140207..140294TCONS_00057965-exon-scaffold_302-1491911889:140207..140294Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:139787..139929TCONS_00057965-exon-scaffold_302-1491911889:139787..139929Clytia hemisphaericaexon
TCONS_00057965-exon-scaffold_302-1491911889:139349..139678TCONS_00057965-exon-scaffold_302-1491911889:139349..139678Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057965-proteinTCONS_00057965-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:139349..141158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.97559	4.4225	3.50878	3.17845	28.9736	22.0539	15.6867	17.9053	8.68132	10.8175	8.7671	7.76129	6.10382	4.90582	5.99698	6.87512	10.2684	11.5266	4.96276	7.34331	10.9925	13.0527	11.2965	14.3744	8.56541	10.7921	12.6304	11.6817	11.7691	14.8517
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR000299FERM_domain
IPR019748FERM_central
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
Blast
[Close]
BLAST of TCONS_00057965 vs. Swiss-Prot (Human)
Match: FAK2 (Protein-tyrosine kinase 2-beta OS=Homo sapiens GN=PTK2B PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.803e-34
Identity = 65/162 (40.12%), Postives = 104/162 (64.20%), Query Frame = 1 
Query:  172 FLPNGEFRAVKFGDQSDLKSIIEIVI--RRLGANIPLTSKYYGIKLQNSETKNFHWLNPSLTMIEIKSKHRHENTDDTWKYKLRIRYLPVVIKDLYGVDKTTFYFLYDQVRHDYMNEIANSVDIDLAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKEIGL 651
            F P   F+ VK   Q++++ II  ++   R+G NI L ++ YG++L++ ++   HWL+P +T+ E++ K+   + +  W+Y L+IRYLP    +    D+TT  + Y Q+R+DYM   A+ V   +A QLG LE++RFF +MP  ALDKKSN + +EKE+GL
Sbjct:   50 FNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRL-AECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGL 210
The following BLAST results are available for this feature:
BLAST of TCONS_00057965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAK22.803e-3440.12Protein-tyrosine kinase 2-beta OS=Homo sapiens GN=... [more]
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