TCONS_00057966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057966
Unique NameTCONS_00057966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057966 ID=TCONS_00057966|Name=TCONS_00057966|organism=Clytia hemisphaerica|type=transcript|length=2520bp
ggATCAGAATGACGTTACAAAACACTCTAAGTTTGCAATATAGGTAGGTT
TTAGACAATTTTAAGTGGTTTCTCGGCTTATAAATTCAAGTTTTCGCCCA
TTTACtatccaaagggcttatgatgtGCTCAGCGTTATCGGTTtaggcgg
gtgcgacgccggtcGACGGCTGAATataaacttttattatttcattACGA
TAGCTTTCTCTATGAGCATTGTGTGCGTTCAGCAACacttaaccggcgtt
tgcgacgacgggaagcGTCTAGTATCTGCTGACCTGTTTTCGTAtttatt
tttgcaaatgttGGGCAGTATTTCCCAaccatttttaaagattttgacct
GCAACATATGAACTGGCTGTATGCATTACTGTTTATTGTGACTGTGATTT
ATTATTTATGATACGAAGAAGGGTTTAATTATTCATTAAATGGCGAGACT
TAATTGATTTTTCTTCAACCACTAAATTTTTAATCAGAAATGGGTTACAT
GCTCAATTCATGACACCAgctagttttcaaaaattcgtTTTCTTCATAAC
ATGAAGTTTTTGGAAACAAAATCACGATTGAAAAATGTGTTGGTTAAATA
GTGCAGAAtctgaaaattggtcaaaacttATGAGACTAATCAAGGAAGCT
GGTCACGAGTTATGTAGCCACATTTTAcatgttaaagaaaataaacctCA
AAATGATGCAAAACTATATAAATTTTTCTTGCAAAAACAAGCTCATTTTA
ATACACTGTTGAAGCGAAAGAAACTGAAGAAAAttcaatttgataaaatt
tttccaacGAATGGGAAGACAGACATTTCTGGGTTCGATATCACTCTTTT
CACACTCGTCATTGAAGTCATGTTCGggaaaacaaaatacaaaaaagaaa
tgaaGGAGTTGAGAGATTGGAGGAACAGCATAACACACTATGGTCAAAAA
GCAATAAATCGCACCGAGTTTGAAAATTATTGGAATGATTTTATACAATT
TATAGATGGCTGTGGTATagatggaaaaaagttttcacaTTTGAAAGGTA
GATATGCTAAGttatgaaaatgttgaaaaaactaTGAACCTTTTAAGGAC
CAAAAGAAGAAATGGGAAAAGCCCAGTAGGAATTAGAAATTGTTCTTTTG
GGTCTTGTATCGTTTTTTGATTCAGAGAAAGGTTTCAATGTTCGTATTTT
CAGCGAAATTTTTAGTCCAtgtataaattttgataaactgTTTGACTAAA
TTCTGTCTGTCCTCTAGtgaatttatttgaaaatttccaacGAGCACTCA
AACAATAACTAAGGCTACAAGGTTTCCTATTCATTCAACTTGGCTAGAAA
ATAGTTAATAAAGTTttcgttcttttaaaaaacccacatgaaaaccaaaa
gatttggcgtttattcgaagtaataaaCTGCAAACTTTTTGGTGATAACA
TTTTCGGTTTTATTTTGTAGATACAAGAAAGAACATGTGGATTTGGCTGT
GTGTTTTAGGCTTGATTGTTGCGATGATCTCCTTTTGCAGTGTTCAACAA
AATGTAGAACCAATGTCGgtgatttttgaaagaaaattaaatacgTCCTC
AGAAGTTCTGAAGAAGTATTACATTGAAACCATTGGTCaacaaaacctaa
aaacaataAACAAGGTCTATCGAAACAAGAAAAGATTTTACGTTGAGCTT
ATGATTGCAACCAAAGAAAACTCTGATGATGTTTTCTCAAAGAGCAATCG
AGATTCTGAGGCTAAGGATCACCATCAGAAAGTCACCATAGATCAACTGT
TGGATTCAAACAGAGAAAATAACATGGTTCTTATACAGGGGGCAGGAGGC
GTTGGGAAAAGTTTCATGCTTGAAACAGCTGCTCTACATTGGGCAGAAGG
AAAGATATGGCCAGACATCAAGTTTGTCTTTTTATTGACTTTTCGAGAGC
TCAATCTTTATACAAACACATCTTTTAAAGAGGTTCtatcaaagaaattc
aaaatgatCTTCAGAGGCTTGGAAATATCTGATCTTGATAGTATTGGCGA
TCAGACAGTTATTTTGATGGATGGTGTGGATGAATTTGCAAAGCTGAACG
AAACACTTTCCCATGAACATCAAAGCGGAGATAACTCTGTTGCATCTGGC
TTTTATGAATTGatcaaatcaaactttttaccTGGAAGGAATCTGATCAT
CACGGGTAGAACGTCTTCATGTGACCAATTGAGAAGCAAATTTAAGGAAT
TATCCATCAAAAGTTTGAATGGTCTTGGGTTCAATACATCACAAATGAAT
CAATACATCAAAAACTATTTCAACTTAAATGAAAGTAAAGCTGAAAATTT
GATTGTTGCgatacaaaaacatgaaaatttaaAGTTGATGGCAAAAACAC
CAGCATTTTTGTGGTCTCTATGTGAACTACACCAAAATACAGATGGcttt
gaagaaatagaaactGTCACTCCTCTATTTATCTTACAATTGAGCCTGTT
TATACAAGAACATCTTCGTC
Run BLAST on NCBI

protein sequence of TCONS_00057966-protein

>TCONS_00057966-protein ID=TCONS_00057966-protein|Name=TCONS_00057966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MWIWLCVLGLIVAMISFCSVQQNVEPMSVIFERKLNTSSEVLKKYYIETI
GQQNLKTINKVYRNKKRFYVELMIATKENSDDVFSKSNRDSEAKDHHQKV
TIDQLLDSNRENNMVLIQGAGGVGKSFMLETAALHWAEGKIWPDIKFVFL
LTFRELNLYTNTSFKEVLSKKFKMIFRGLEISDLDSIGDQTVILMDGVDE
FAKLNETLSHEHQSGDNSVASGFYELIKSNFLPGRNLIITGRTSSCDQLR
SKFKELSIKSLNGLGFNTSQMNQYIKNYFNLNESKAENLIVAIQKHENLK
LMAKTPAFLWSLCELHQNTDGFEEIETVTPLFILQLSLFIQEHLR
Run BLAST on NCBI

transcript from alignment at scaffold_302:178132..181103-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057966 ID=TCONS_00057966|Name=TCONS_00057966|organism=Clytia hemisphaerica|type=transcript|length=2972bp|location=Sequence derived from alignment at scaffold_302:178132..181103- (Clytia hemisphaerica)
GGATCAGAATGACGTTACAAAACACTCTAAGTTTGCAATATAGGTAGGTT
TTAGACAATTTTAAGTGGTTTCTCGGCTTATAAATTCAAGTTTTCGCCCA
TTTACTATCCAAAGGGCTTATGATGTGCTCAGCGTTATCGGTTTAGGCGG
GTGCGACGCCGGTCGACGGCTGAATATAAACTTTTATTATTTCATTACGA
TAGCTTTCTCTATGAGCATTGTGTGCGTTCAGCAACACTTAACCGGCGTT
TGCGACGACGGGAAGCGTCTAGTATCTGCTGACCTGTTTTCGTATTTATT
TTTGCAAATGTTGGGCAGTATTTCCCAACCATTTTTAAAGATTTTGACCT
GCAACATATGAACTGGCTGTATGCATTACTGTTTATTGTGACTGTGATTT
ATTATTTATGATACGAAGAAGGGTTTAATTATTCATTAAATGGCGAGACT
TAATTGATTTTTCTTCAACCACTAAATTTTTAATCAGAAATGGGTTACAT
GCTCAATTCATGACACCAGCTAGTTTTCAAAAATTCGTTTTCTTCATAAC
ATGAAGTTTTTGGAAACAAAATCACGATTGAAAAATGTGTTGGTTAAATA
GTGCAGAATCTGAAAATTGGTCAAAACTTATGAGACTAATCAAGGAAGCT
GGTCACGAGTTATGTAGCCACATTTTACATGTTAAAGAAAATAAACCTCA
AAATGATGCAAAACTATATAAATTTTTCTTGCAAAAACAAGCTCATTTTA
ATACACTGTTGAAGCGAAAGAAACTGAAGAAAATTCAATTTGATAAAATT
TTTCCAACGAATGGGAAGACAGACATTTCTGGGTTCGATATCACTCTTTT
CACACTCGTCATTGAAGTCATGTTCGGGAAAACAAAATACAAAAAAGAAA
TGAAGGAGTTGAGAGATTGGAGGAACAGCATAACACACTATGGTCAAAAA
GCAATAAATCGCACCGAGTTTGAAAATTATTGGAATGATTTTATACAATT
TATAGATGGCTGTGGTATAGATGGAAAAAAGTTTTCACATTTGAAAGGTA
GATATGCTAAGTTATGAAAATGTTGAAAAAACTATGAACCTTTTAAGGAC
CAAAAGAAGAAATGGGAAAAGCCCAGTAGGAATTAGAAATTGTTCTTTTG
GGTCTTGTATCGTTTTTTGATTCAGAGAAAGGTTTCAATGTTCGTATTTT
CAGCGAAATTTTTAGTCCATGTATAAATTTTGATAAACTGTTTGACTAAA
TTCTGTCTGTCCTCTAGTGAATTTATTTGAAAATTTCCAACGAGCACTCA
AACAATAACTAAGGCTACAAGGTTTCCTATTCATTCAACTTGGCTAGAAA
ATAGTTAATAAAGTTTTCGTTCTTTTAAAAAACCCACATGAAAACCAAAA
GATTTGGCGTTTATTCGAAGTAATAAACTGCAAACTTTTTGGTGATAACA
TTTTCGGTTTTATTTTGTAGATACAAGAAAGAACATGTGGATTTGGCTGT
GTGTTTTAGGCTTGATTGTTGCGATGATCTCCTTTTGCAGTGTTCAACAA
AGTAAGATTCCCAAATTAATTTGATGAAAATCTTTTCCAACTACAATTTG
TTATTTGATATTTGATATACTTTCAAATGTTCATGACATAAGCTTCTGAA
AAAACTATACAGTTGCTTCAAATATTCAATAAACCCTCGGATACTTTAGG
CGTACAAACTTTCGCGAGCAGAAACTTTCACGAGGTCGAAGTATCGCAAA
ATTTACGTGAGCATCAAACTTTCACAAATCAAGACATAAAAATGAAAATT
TTCGTATGAAAGGAACAAACATTTCTTGAATTGGATTGAAACTTTATGTC
TTTTGACTTATTTGGCTTTAACAGGCTAAAAAGTACCATAAATCTTACAT
TTTTACTTTCGCGAAAAGGGCTGACATTCGCGAAATTGCGAAAGTTTCTG
ATCGCGAAAGTTTGTATGCCTAAAGTAATTATTTGATCTCATTTTTCTTT
CAGATGTAGAACCAATGTCGGTGATTTTTGAAAGAAAATTAAATACGTCC
TCAGAAGTTCTGAAGAAGTATTACATTGAAACCATTGGTCAACAAAACCT
AAAAACAATAAACAAGGTCTATCGAAACAAGAAAAGATTTTACGTTGAGC
TTATGATTGCAACCAAAGAAAACTCTGATGATGTTTTCTCAAAGAGCAAT
CGAGATTCTGAGGCTAAGGATCACCATCAGAAAGTCACCATAGATCAACT
GTTGGATTCAAACAGAGAAAATAACATGGTTCTTATACAGGGGGCAGGAG
GCGTTGGGAAAAGTTTCATGCTTGAAACAGCTGCTCTACATTGGGCAGAA
GGAAAGATATGGCCAGACATCAAGTTTGTCTTTTTATTGACTTTTCGAGA
GCTCAATCTTTATACAAACACATCTTTTAAAGAGGTTCTATCAAAGAAAT
TCAAAATGATCTTCAGAGGCTTGGAAATATCTGATCTTGATAGTATTGGC
GATCAGACAGTTATTTTGATGGATGGTGTGGATGAATTTGCAAAGCTGAA
CGAAACACTTTCCCATGAACATCAAAGCGGAGATAACTCTGTTGCATCTG
GCTTTTATGAATTGATCAAATCAAACTTTTTACCTGGAAGGAATCTGATC
ATCACGGGTAGAACGTCTTCATGTGACCAATTGAGAAGCAAATTTAAGGA
ATTATCCATCAAAAGTTTGAATGGTCTTGGGTTCAATACATCACAAATGA
ATCAATACATCAAAAACTATTTCAACTTAAATGAAAGTAAAGCTGAAAAT
TTGATTGTTGCGATACAAAAACATGAAAATTTAAAGTTGATGGCAAAAAC
ACCAGCATTTTTGTGGTCTCTATGTGAACTACACCAAAATACAGATGGCT
TTGAAGAAATAGAAACTGTCACTCCTCTATTTATCTTACAATTGAGCCTG
TTTATACAAGAACATCTTCGTC

Coding sequence (CDS) from alignment at scaffold_302:178132..181103-

>TCONS_00057966 ID=TCONS_00057966|Name=TCONS_00057966|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_302:178132..181103- (Clytia hemisphaerica)
ATGTAGAACCAATGTCGGTGATTTTTGAAAGAAAATTAAATACGTCCTCA
GAAGTTCTGAAGAAGTATTACATTGAAACCATTGGTCAACAAAACCTAAA
AACAATAAACAAGGTCTATCGAAACAAGAAAAGATTTTACGTTGAGCTTA
TGATTGCAACCAAAGAAAACTCTGATGATGTTTTCTCAAAGAGCAATCGA
GATTCTGAGGCTAAGGATCACCATCAGAAAGTCACCATAGATCAACTGTT
GGATTCAAACAGAGAAAATAACATGGTTCTTATACAGGGGGCAGGAGGCG
TTGGGAAAAGTTTCATGCTTGAAACAGCTGCTCTACATTGGGCAGAAGGA
AAGATATGGCCAGACATCAAGTTTGTCTTTTTATTGACTTTTCGAGAGCT
CAATCTTTATACAAACACATCTTTTAAAGAGGTTCTATCAAAGAAATTCA
AAATGATCTTCAGAGGCTTGGAAATATCTGATCTTGATAGTATTGGCGAT
CAGACAGTTATTTTGATGGATGGTGTGGATGAATTTGCAAAGCTGAACGA
AACACTTTCCCATGAACATCAAAGCGGAGATAACTCTGTTGCATCTGGCT
TTTATGAATTGATCAAATCAAACTTTTTACCTGGAAGGAATCTGATCATC
ACGGGTAGAACGTCTTCATGTGACCAATTGAGAAGCAAATTTAAGGAATT
ATCCATCAAAAGTTTGAATGGTCTTGGGTTCAATACATCACAAATGAATC
AATACATCAAAAACTATTTCAACTTAAATGAAAGTAAAGCTGAAAATTTG
ATTGTTGCGATACAAAAACATGAAAATTTAAAGTTGATGGCAAAAACACC
AGCATTTTTGTGGTCTCTATGTGAACTACACCAAAATACAGATGGCTTTG
AAGAAATAGAAACTGTCACTCCTCTATTTATCTTACAATTGAGCCTGTTT
ATACAAGAACATCTTCGTATGTGGATTTGGCTGTGTGTTTTAGGCTTGAT
TGTTGCGATGATCTCCTTTTGCAGTGTTCAACAAAATGTAGAACCAATGT
CGGTGATTTTTGAAAGAAAATTAAATACGTCCTCAGAAGTTCTGAAGAAG
TATTACATTGAAACCATTGGTCAACAAAACCTAAAAACAATAAACAAGGT
CTATCGAAACAAGAAAAGATTTTACGTTGAGCTTATGATTGCAACCAAAG
AAAACTCTGATGATGTTTTCTCAAAGAGCAATCGAGATTCTGAGGCTAAG
GATCACCATCAGAAAGTCACCATAGATCAACTGTTGGATTCAAACAGAGA
AAATAACATGGTTCTTATACAGGGGGCAGGAGGCGTTGGGAAAAGTTTCA
TGCTTGAAACAGCTGCTCTACATTGGGCAGAAGGAAAGATATGGCCAGAC
ATCAAGTTTGTCTTTTTATTGACTTTTCGAGAGCTCAATCTTTATACAAA
CACATCTTTTAAAGAGGTTCTATCAAAGAAATTCAAAATGATCTTCAGAG
GCTTGGAAATATCTGATCTTGATAGTATTGGCGATCAGACAGTTATTTTG
ATGGATGGTGTGGATGAATTTGCAAAGCTGAACGAAACACTTTCCCATGA
ACATCAAAGCGGAGATAACTCTGTTGCATCTGGCTTTTATGAATTGATCA
AATCAAACTTTTTACCTGGAAGGAATCTGATCATCACGGGTAGAACGTCT
TCATGTGACCAATTGAGAAGCAAATTTAAGGAATTATCCATCAAAAGTTT
GAATGGTCTTGGGTTCAATACATCACAAATGAATCAATACATCAAAAACT
ATTTCAACTTAAATGAAAGTAAAGCTGAAAATTTGATTGTTGCGATACAA
AAACATGAAAATTTAAAGTTGATGGCAAAAACACCAGCATTTTTGTGGTC
TCTATGTGAACTACACCAAAATACAGATGGCTTTGAAGAAATAGAAACTG
TCACTCCTCTATTTATCTTACAATTGAGCCTGTTTATACAAGAACATCTT
CGTATGTGGATTTGGCTGTGTGTTTTAGGCTTGATTGTTGCGATGATCTC
CTTTTGCAGTGTTCAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036539XLOC_036539Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057966-proteinTCONS_00057966-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057966-exon-scaffold_302-1575043694:179553..181103TCONS_00057966-exon-scaffold_302-1575043694:179553..181103Clytia hemisphaericaexon
TCONS_00057966-exon-scaffold_302-1575043694:178132..179100TCONS_00057966-exon-scaffold_302-1575043694:178132..179100Clytia hemisphaericaexon
TCONS_00057966-exon-scaffold_302-1510915933:179553..181103TCONS_00057966-exon-scaffold_302-1510915933:179553..181103Clytia hemisphaericaexon
TCONS_00057966-exon-scaffold_302-1510915933:178132..179100TCONS_00057966-exon-scaffold_302-1510915933:178132..179100Clytia hemisphaericaexon
TCONS_00057966-exon-scaffold_302-1491911889:179553..181103TCONS_00057966-exon-scaffold_302-1491911889:179553..181103Clytia hemisphaericaexon
TCONS_00057966-exon-scaffold_302-1491911889:178132..179100TCONS_00057966-exon-scaffold_302-1491911889:178132..179100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:178132..181103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.307034	0.239525	0.295493	0.374122	0.372647	0.278111	0.572373	0.517371	0.219922	0.288433	0.0155533	0.265828	0.428817	0.371109	0.453294	0.78581	0.253538	0.307117	0.897555	0.939227	0.282015	0.45611	0.176019	0.320054	0.313166	0.470725	0.842008	0.449307	0.851959	0.885371
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007111NACHT_NTPase
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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