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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057972 ID=TCONS_00057972|Name=TCONS_00057972|organism=Clytia hemisphaerica|type=transcript|length=1914bpRun BLAST on NCBI protein sequence of TCONS_00057972-protein >TCONS_00057972-protein ID=TCONS_00057972-protein|Name=TCONS_00057972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MENSKSLEASYSSKTNSTVVLVEPSNSSTGNKGKLTFHLALGAIVCFAGSRun BLAST on NCBI transcript from alignment at scaffold_302:212042..246242- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057972 ID=TCONS_00057972|Name=TCONS_00057972|organism=Clytia hemisphaerica|type=transcript|length=34201bp|location=Sequence derived from alignment at scaffold_302:212042..246242- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_302:212042..246242- >TCONS_00057972 ID=TCONS_00057972|Name=TCONS_00057972|organism=Clytia hemisphaerica|type=CDS|length=20046bp|location=Sequence derived from alignment at scaffold_302:212042..246242- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057972 vs. Swiss-Prot (Human)
Match: GTR1 (Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2) HSP 1 Score: 322.398 bits (825), Expect = 9.489e-102 Identity = 212/495 (42.83%), Postives = 306/495 (61.82%), Query Frame = 2
Query: 233 VEPSNSSTGNKGKLTFHLALGAIVCFAGSSLQFGYNLSVINAPQSVIEKHFEN--VKRFKE--------FLWPFAVAIFAVGGMGGAFIGPYIAKAIGRKRTLMLNNALAISGGIFLGVTKMADSVTILVIGRFLVGINAGVNTVVAPMYLSEIAPINLRGSLGTLNQFGIVSXXXXXXXXXXXXXXXXXXXWPYLFAITGVIGVLQLCVLPFCSESPRYLLAIKKDEANAIINLQKLRGSDDVQAEIQEIKMDAEKEASQETVSIIELFKNSYYHKPLLISVVLQLAQQLSGIGGILYYSTELFKEIGLSIPESQKASCGVGALSVIMTLVCMVLVDKKXXXXXXXXXXXXMIVLYAVTTVAFKYVEDKKDWAPILGVVCTLGAVVFFQAGPGAIPWFIVAELFSQNSLSAAVSVAGPMNWLGNFVVGLLFPVIKDKVHPYTXXXXXXXXXXXXXXTYLVVPETKGLSIAQINRILRKDGGAAGYPDEADKKDE 1687
+EPS+ G+L LA+G V SLQFGYN VINAPQ VIE+ + V R+ E LW +VAIF+VGGM G+F GR+ ++++ N LA + +G +K+ S +L++GRF++G+ G+ T PMY+ E++P LRG+LGTL+Q GIV G+L+ + GL I+GN++ WP L +I + +LQ VLPFC ESPR+LL + +E A L+KLRG+ DV ++QE+K ++ + ++ V+I+ELF++ Y +P+LI+VVLQL+QQLSGI + YYST +F++ G+ P A+ G G ++ T+V + +V++ GRR L L+GL GM + T+A +E + W L +V G V FF+ GPG IPWFIVAELFSQ AA++VAG NW NF+VG+ F ++ PY FI F VLLV+FF FTY VPETKG + +I R+ G + ++DK E
Sbjct: 1 MEPSSKKL--TGRLM--LAVGGAVL---GSLQFGYNTGVINAPQKVIEEFYNQTWVHRYGESILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQP--VYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALALLE-QLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFRQGGAS-----QSDKTPE 480 The following BLAST results are available for this feature:
BLAST of TCONS_00057972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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