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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058028 ID=TCONS_00058028|Name=TCONS_00058028|organism=Clytia hemisphaerica|type=transcript|length=648bp
TCAAAATCTAACGCAACCAAAACTGTTTGGTTTCTCAGAAAAAGAAGCCG
AGAGTTTTCCAAGTAGAATTAGTGAAATTATCATACCTTTTACTGGAGAA
TGTGACTCAACGAAATTAAGCAAATATACAGGAAAGCTGATCGAAGTgtc
agatattttgaaaaagaacacaTGTAATGGTCAGCATCCAACCATACCAG
CAAGGACAATAGCGAGGCGTGAAGCAGTCATGAGCTCACCCATTCAGAAT
GCAGATGGTAGCGTTACAACGGTGAggaattgtttcatcaagggtACATT
GACAAGGAACAACAATTTGAGATTGTGCAGTGAATGTCAAGCAGTGACTC
GATTACCTGATAATGTatttCCCAGGTTTATCAATGAAGTCATTTGTCAA
CCTTTGGATCAACCAACAACGAATGCAAAACAAGAATGTCTAACAGGCTC
TGGAAATTGTGTGGAGAAAATTCTGAACATTCCATTTCGTAAAGACACTG
AAAATCTTGGTGTTGATAGACTATTTGAATGGACAACTTTTAACCAACCT
ATTCGTGCAGCTTGTAATTGTGAAATTCACCAGGATTCACCCTTCGCTAT
TTTCGTGTGAAGTACCTTAAAAGAAGAATATCTTTTGGTAAATCggac Run BLAST on NCBI transcript from alignment at scaffold_304:185276..192862- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058028 ID=TCONS_00058028|Name=TCONS_00058028|organism=Clytia hemisphaerica|type=transcript|length=7587bp|location=Sequence derived from alignment at scaffold_304:185276..192862- (Clytia hemisphaerica)
TCAAAATCTAACGCAACCAAAACTGTTTGGTTTCTCAGAAAAAGAAGCCG
AGAGTTTTCCAAGTAGAATTAGTGAAATTATCATACCTTTTACTGGAGAA
TGTGACTCAACGAAATTAAGCAAATATACAGGAAAGCTGATCGAAGTGTC
AGATATTTTGAAAAAGAACACATGTAATGGTCAGCATCCAACCATACCAG
CAAGGACAATAGCGAGGCGTGAAGCAGTCATGAGCTCACCCATTCAGAAT
GCAGATGGTAGCGTTACAACGGTGAGGAATTGTTTCATCAAGGGTACATT
GACAAGGAACAACAATTTGAGATTGTGCAGTGAATGTCAAGCAGTGACTC
GATTACCTGATAATGTGTAAGTTAATTTCTTTGGTGTTTTTAGTAGCTGA
TGAGGATGATATGGGTCCTACTCCTTACGAAGTAGGAATTCCTTCTTTTT
CATATTGGGACGCTTAGCGCTGTCCAGACATCACTGGTTCTGTGCACGCG
AGACACGGATACCATGATGCATGGTGGTGACACTGGTGTTTTTATTAGCT
AATGAGATTAAATTCATCTATGACAAGTTTTCAGTGTTGCAATTCTCCAT
CTAAAAAGACTTACAAATACTTGATTAGATTTTTCGGAGAACTAAAAGTT
TATAGAGTGGACTCTTCAAAACTTTTTTCAAACCAATTTTTCGAATGTCT
GCTTGATTACAAAATTCCATAACTCGAACAAATTTTTGTTCTCCGTACCT
GTTCGAGTTATAGAGGCTCCATTGTATAAGCCAGTGAGATATATGTCCCT
CGCATCAATGGCTAATCTGAGGGGGTTACAATATTTATGACAGAGAGACT
TAATTTGCTTATAAGGACTTTGTCTAAAACACTCTCGGTATAACTGTAAC
ATAGGTAATTGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGC
ATTGTGGGATTGTTTCGATTGTATTACAATAGAAATCTCTTAGGAATTCC
TCGAGGGAATTCTATTGTAATACACTCGAAACAATCCCACAATGCATCGC
TTTTTTAGAAAAATCAAAAACTCCGAGAAGGTCTATTGTGAGCTATGGTG
ATACATATAATGCCCAGAGGCTGTGTTCCATTTGTCGAACATTTGTTCCT
ATATTTTGAGACAGGGGTATTCATTTTGAAAATTTGAGCTCTACATTGCT
TGAAAATGCACTAAATTGTGACAATTATGACAAATTAAAAAAGAAAAACT
TTGCATTTTGCAAAATAACCATTTTTGAAAAAATTATTGGGGGGTGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCATTATC
GAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGTTTGGATAT
AGTCAAATTAGAACCTTACCATCTCCGTCACTGAAAAACACACATATATA
AACTCGGCAATTTCATAATTGGAACACTTACGGGGATCACACATTTGTTC
GAGTTATATAGTAAGGTTTATAAGGTATTGTTAATTGAATAAACCATAAA
ATTTGTTCGAGTTAAGGAGATTTCGAGTTGTAGAAGTACGAGTTAAAGAA
ATATTTTCGAAATCACAATATTTCAAAGTATTTAGAGAAGATACATTTTA
AAACGTAAATTTGTGGTTGGCGGCGAATCAGGAAATGTTTAGTGTACGTG
TTTGGTTAAATACAAGACAGACAATATATTTGACAACCATTAAATTAATA
CAAAGCCATAAATAAGTATCCTCTCAAATATTTAGAAATGATGGGGCTTA
AATACCACCGAAAGTTAATTGTTTGGCGTAGGCTGTGATTGGCAGCCGCT
CAATTTCTTCCAAATTAAGTTACGTTTTACGTGACTGTAGGCGCTTACTG
TCGCAGTGATGTCTCTTTAACTCGTACTTCTACAACTCGATTGTCCACTT
AACTCGAACAAGTTTTAAGGTTCCTTCAGTTAACAATACCTTATAAACCT
TACTATACAACTCGAAATCTCCATTACTCGAACAAATTCTATGGTTCCTT
CAATTAACAATACCTTATAAACCTTACTATGTATCTCGAAATCTCCTTAA
CTCGAACAAGTTTTATGGTCCCTTCAGTTAACAATGTCTTATAAACCTTA
CTACATATCTCGAAATCTCCTTAACTCGAACAAATTTTATGGTTCCTTCA
ATTAACAATACCTTATAAACCTTTCTATATAACTCAAACAAATGTGTGAT
CCCCGTAAGTGTTCCAATTATGAAATTGCCGAGTTTATGTATGTGGGTTT
TTCAGCGATGGAGATGGTAAGGTTCTAATTTGACTTACCGTCCTCGATAA
TGCGGGTCAGAAGTGCAGGTTATTCTAAATCGCTTCAGTCACTTTACCGT
CCTCAAAGGTGCAAATACATAAACTCGCTATTATTGGCCTTGCTGTAGAT
GGGGAACTCTTTTTGACATTCGAATACATTGGAGTTTTCGAACACGCACG
GTAAACTCGAATTTTGTTCGATGAATTACCGAGTTATGGAGATTGATTTG
CAAGGAATAGACGATATCGGCTTTCCGAATTCTCCCCGAATGATTACCAA
TGATATGCATTGCGCGGAAAGTCAACATCGTCCGTGAATCTTTTTGCGCA
ATGCGTCATGGGTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCT
ATTATTGTTATTTGAAGGAACCAGAAAAGTTGGTCGAATTAAGATTCGAG
TTATAGAGGTTCAGGTTCTGAAAATTCTATTGTATTTACAGCGGAAAAGT
TTGATGCTGGTGGCGAATCAGGAAATGTTTAGTTTACGTGTTTGGTTAAA
TACAAGACAGACAATATATTTGACAACCATTCTATTAATACAAAGCCATA
AATATAAGTATCCTCTCAAATATTTGAAAATAATGGAACACAAATACCGC
CGAAAGTTAATGGTTTGGCGTAGGCTGTAATTGGCAGCCGCTCATTCTTT
TCCTTTTCTTCCAAATTAAGTGACGTTTTACGTGACTGCAGGCGCTTGTT
GCTGCAATAGAGTCTCATTAAGGGTTCTGGCCATAATCGAAAGATCCGTT
ACGAGGTTTGAAGATAAAACTTTTGTTTTGAGTTCCTTGACACTTTTAAC
AAAAAACTGTTTTTATAAGTTGTTTGTGAATTTATTCTATCAAAAGTAAT
TGGCAATTTAATTACAAAAATGACGTTACAAACCTTAAAAAGACGATAAT
AAAATGTTATATTGCCCTCTTTTACAAAAAGTGCTAAGTTGTAATGGGTA
ATTAACCTTTTTGTTTCGAAATGTTTTTAAATTGTCTGCAAAAGATGGAA
AAATTTTCTAAATTGATGTTTCAAAACTTATGACCCTTTTTGTACGAAAA
ATTGGGACACTATTTTCAAGATTTTGAGACAAAGAAACTTTTACATAAAT
TTCCGAAAATACATTGTTAGTTTAGTTAAAGATACACCATTTAGTGCAAA
AATATTTTTTCTTCGCCGAAAATAAGCTCCTCAAAGTTGAAATACTTATC
TTCGCAAATGTCTTCATTTTCTTCTTCGTCAAATTTTTTCATTGCGATCT
TTAGATTTTTAGATTCAGGAATAGTTTGACTAACATAAAATATATAACAT
GCCATAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTATATACGAC
AATTATGAAAAATTCACTATGGTCAGAGCCCTTAAATCGAACTTCCACAA
CTCATGTCTCCTTTAATTAACAATGCCTTATAAAACTTACTTTATAACTC
AAAATTTCCTCAACTTGAAAAAATTTGTGTTCCCTGTACGTGTTCAAACT
ATTTAATTATGGTATAGGTCATGTTTGAGTTCATTGGAAAGCTCTCTTCA
AAATCTTTTCAGCATGTATTTTCTTTTGATTAGGTCCTAAATCGAAGCAG
CCGAAAGAATCGTTCATAAATAAAGGAAATTTAGCTCGGCAGTACTGAAA
AAAAACTTTGATCATATGACAGCTTCAGTAAAAACAAGATAAAACTTAAT
CCGAAAATAGATTTTGCCATGGATCAATGTGTCAGATCACAAACAACAAA
ATTTTCATTTTTTGAAAAAACTAATATTTTGCTTCACAACGAAAAAGTTA
AGTAAGGAGAGTAAGGCGTTATTTTCTGAAAACAGAATGAATAGTCGTTT
CATTTTTCTCGCCACCATGAAAAAGCATTTTTCGAAGATGAATGATTGCT
TCATCTTTTCTCTTTGTTCCGTGTTTCGAAACAGTTCATCCTTACCTCAA
TAAAAATTTAATGAATCCATTAAGAGTCATTAAAATTGACCACTAAAACC
ACTAAACTGTATCAAAGTATTTTTAATTCGCTTTATTATGAGTAATTTTT
GTGGTTAAAATAAACCCTGAAGCATCAAATTATGAGTGATAATGAACCCT
AGCAAGAGATTGAAATGTGAGTGATACACTTTTTCGACCGTGTAGTCGCG
CGGTCAGGCACGTGTCACTTTATTATTTAGCCATCCCCCTAAACTCGATC
GAATCCTTTTTATACACCTTTTTCTATTGTCTCTAGGAGCAAAAAAAAAG
ACTGGGTGGTTTTAGGGTGGTAAAACAGACAACAAAATGCCCTCGCGGCA
ATTGGTGGCTGCGGTCAAAAAGGTATATTTGATTCACATCGTCGAATAAA
CTTTTCGACCGCTAAAACGGACACAAAGGCCGAGGTTAGTTGAGAAATAA
ACCTTAGATATGAGGTCAATCCCCCAGCGGGAGGGGGGGTACTTAGGCCA
AAATGGGTGCCTTAAAGGGTCGGTTTTTTCACCTTTCAAAATCTCTCTAA
GAGTCGAAATAGTCACGATTTTGAGAATTTTTTTTGTTTTTGAGAGTNGG
GGGGGGGGGGGGGGGGGTACTTAGGCCAAAATGGGTGCCTTAAAGGGTCG
GTTGTTTTTGAGAGAAAAAATTTATAAAAAAGTCTATCTAAGGGTAGGAC
TTTTTTCAAAAGTGGAAGAGAATTTTTCAAAAAAGTCTCTCTGAAAGGGT
CAAGGTTTGGAGGTCCTGCACACACATACCCATCATCCCGTAACCCTAGT
ACTTCCCCCCAAAAGGGGGTCAATCATGCTATATAATACATTCGTCCATT
AATTTTTTTAACCAAATTACTAGAGAGTTCAAAAATCATCGAAATTTCTT
TGGAGCGTATCAAGCGTATTAAGTTTTTTGGAAAGTGCTCATGTAGGAAA
AGGCTTAGAATCTCGCCAAATACCGGATGTTTTTGACTCAATTACAATGC
ATTCTACTCTTCGAAGACAGTATTATTATCATGGCCATTTTGATATCAAT
ATTTTAAATATGAACAGCAATTCTTGTACCGAAATTTTTATTACCTGAAA
TAATGATGAAGCAATTTTGTGCCCACTATAGTAAAAAATGCCTACAATAT
CACATTCCCAAGCATGATTTATGATTCTAAAATCTTCTGAGTCAAATGCA
AATGATGATATTACAGTTTTTTCAGTTTATTCTTCAAATAGTTTGATTTC
CTAAATCCATAAATAAAATGGTAGGAGGAGCTTGTACATTAGTACTTGAT
TATTGGGAAATGAGTGGGTTATAAATATTTTGTCGCTACGGAATCAAAAT
CTTTTTCCAACGAGTTTGTAATAAAAAAACTACTTATATTCATCTGAATA
TTCGGTAATTACTGACATTTGTCAGCATTTACTACAAAATACACAGATTT
AAAATATTAAAGGCTCGGACGAACCTTAGGTATAACACTTGGGATCCCAC
CAAGACTTTAAGACATTCCCTTCTCACAGACCCGGTAGGATTTTTTCGGC
CAGTAGGGGTATAAATAGCCAACTGAGACTCCATGGGGTTTGATATTTCC
ATATTTTTTATGTCTGGGGATTTGGATTCCATTATTTTAAACAAGAAAAT
TCAGTGAAGATGGGAAAAATAGCATGAAATTTTGCAGTGAGGATTTGTTT
ATTTGATTGTTTTCAGTGGGGACAAAAATTGAAAAATAATTCTCCACAGG
AGTCGATACTTTGGCAAATCTTTCCAGTAGGAAAGGGTCCCAGTGGTTTC
TGGGGAATTCGTCAATAGCAAACAGGTTTATTGATACAGTCAGCTATATA
TTAATATGGTAATTTTTGCTCTTCATCTTTGGTATTTTATACAATGATTA
GATTGACACATGCACGATAAAATTTATATTATTGGTCGTCAGAGGTTGGT
ATGTTCTTTGAAAACTCAACCTCTGAACTCAAGGTAATGATGTTTAAATT
GCATAAGAATTGCGTAATATAATTGGTCCAGTGCGCAGCAGAATGGACCT
TTAAAAAGTAACTGATCGAAAAGATTTTGTCTTTGTCGGGGCCTGTGCGC
GCAATAAATTAACAAGTCCAGGCTAAACCAACCGCCGATCTAGAATTTTT
GCCCCGCCTACCCGCGCGATATTTGACCTATGTTTTGGATTGAATTGATA
GTAGAGTCAAATTTCACAGTTAGATTAAAGGGTTGTTTCAGGTAGGGTTA
GGGCTAGGGTTGGGGCTAGGGTTGGGGATGGGAGTTAACCCCTGGTTAGG
GTTTTAGCCCCCGGGTAGAGTTTGGAGTAAATACCATGTTTATAAGCAAC
TTTGACCTCCTTAATGCAGTTGTGACTTGATGGCCGAGTGGTTAAAGTGC
TGGCGCTCTAATCATAGGTGCTTTGTATATAGTGGGTTTAAATCCCATCA
GCGGCAAAAGTTTCGAAATTTCGGGAAAGGCATCAAAAACTTTCAAAACT
TAGCAGTACAAAGAAAGTGTCAAAGAATAGAAGCTCAGAGTGGAGGATGG
GAAGGAAATTTTTTTGCGTCACTTAAGGAACCCGGTACGAACGACATTCG
GTTATTGCCACGTCAGCTGGACCTTCACGCCGTTCCGGCTTCTTGTTTAC
AGTTGAATTTGATGAAGTTTCAGTAGCGTAGACAGGAGGGGCGCAAAATT
TGTGCAGGAGAGCAGATTTTTATTACACAGTAATCATCTTTTGTACCGTA
AATAGATAATTACAGTGTCATAAGAGNTTGGGAACCACTCTCAATGGAAT
TCTTAACTAATGAAGCTACCCAGCTGGCACACAACGTTGTTTGAGCATTT
TTTTAACGTTATATGTACGTTGTGAACGTTAGAACAACGTCGAAACAACG
TTGTGTGCCAGCTGGGTAACATTGTTTCCACATCTTAGTATAGAAGAATA
CACAATTAACACGAATAGACTTCAATTAACAACGACATCACTTTTTTTAC
ATTAGATTTCCCAGGTTTATCAATGAAGTCATTTGTCAACCTTTGGATCA
ACCAACAACGAATGCAAAACAAGAATGTCTAACAGGCTCTGGAAATTGTG
TGGAGAAAATTCTGAACATTCCATTTCGTAAAGACACTGAAAATCTTGGT
GTTGATAGACTATTTGAATGGACAACTTTTAACCAACCTATTCGTGCAGC
TTGTAATTGTGAAATTCACCAGGATTCACCCTTCGCTATTTTCGTGTGAA
GTACCTTAAAAGAAGAATATCTTTTGGTAAATCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058028-exon-scaffold_304-1575043694:192497..192862 | TCONS_00058028-exon-scaffold_304-1575043694:192497..192862 | Clytia hemisphaerica | exon |
| TCONS_00058028-exon-scaffold_304-1575043694:185276..185557 | TCONS_00058028-exon-scaffold_304-1575043694:185276..185557 | Clytia hemisphaerica | exon |
| TCONS_00058028-exon-scaffold_304-1510915933:192497..192862 | TCONS_00058028-exon-scaffold_304-1510915933:192497..192862 | Clytia hemisphaerica | exon |
| TCONS_00058028-exon-scaffold_304-1510915933:185276..185557 | TCONS_00058028-exon-scaffold_304-1510915933:185276..185557 | Clytia hemisphaerica | exon |
| TCONS_00058028-exon-scaffold_304-1491911889:192497..192862 | TCONS_00058028-exon-scaffold_304-1491911889:192497..192862 | Clytia hemisphaerica | exon |
| TCONS_00058028-exon-scaffold_304-1491911889:185276..185557 | TCONS_00058028-exon-scaffold_304-1491911889:185276..185557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_304 | supercontig | scaffold_304:185276..192862 - |
Blast
The following BLAST results are available for this feature:
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