TCONS_00058028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058028
Unique NameTCONS_00058028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058028 ID=TCONS_00058028|Name=TCONS_00058028|organism=Clytia hemisphaerica|type=transcript|length=648bp
TCAAAATCTAACGCAACCAAAACTGTTTGGTTTCTCAGAAAAAGAAGCCG
AGAGTTTTCCAAGTAGAATTAGTGAAATTATCATACCTTTTACTGGAGAA
TGTGACTCAACGAAATTAAGCAAATATACAGGAAAGCTGATCGAAGTgtc
agatattttgaaaaagaacacaTGTAATGGTCAGCATCCAACCATACCAG
CAAGGACAATAGCGAGGCGTGAAGCAGTCATGAGCTCACCCATTCAGAAT
GCAGATGGTAGCGTTACAACGGTGAggaattgtttcatcaagggtACATT
GACAAGGAACAACAATTTGAGATTGTGCAGTGAATGTCAAGCAGTGACTC
GATTACCTGATAATGTatttCCCAGGTTTATCAATGAAGTCATTTGTCAA
CCTTTGGATCAACCAACAACGAATGCAAAACAAGAATGTCTAACAGGCTC
TGGAAATTGTGTGGAGAAAATTCTGAACATTCCATTTCGTAAAGACACTG
AAAATCTTGGTGTTGATAGACTATTTGAATGGACAACTTTTAACCAACCT
ATTCGTGCAGCTTGTAATTGTGAAATTCACCAGGATTCACCCTTCGCTAT
TTTCGTGTGAAGTACCTTAAAAGAAGAATATCTTTTGGTAAATCggac
Run BLAST on NCBI

transcript from alignment at scaffold_304:185276..192862-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058028 ID=TCONS_00058028|Name=TCONS_00058028|organism=Clytia hemisphaerica|type=transcript|length=7587bp|location=Sequence derived from alignment at scaffold_304:185276..192862- (Clytia hemisphaerica)
TCAAAATCTAACGCAACCAAAACTGTTTGGTTTCTCAGAAAAAGAAGCCG AGAGTTTTCCAAGTAGAATTAGTGAAATTATCATACCTTTTACTGGAGAA TGTGACTCAACGAAATTAAGCAAATATACAGGAAAGCTGATCGAAGTGTC AGATATTTTGAAAAAGAACACATGTAATGGTCAGCATCCAACCATACCAG CAAGGACAATAGCGAGGCGTGAAGCAGTCATGAGCTCACCCATTCAGAAT GCAGATGGTAGCGTTACAACGGTGAGGAATTGTTTCATCAAGGGTACATT GACAAGGAACAACAATTTGAGATTGTGCAGTGAATGTCAAGCAGTGACTC GATTACCTGATAATGTGTAAGTTAATTTCTTTGGTGTTTTTAGTAGCTGA TGAGGATGATATGGGTCCTACTCCTTACGAAGTAGGAATTCCTTCTTTTT CATATTGGGACGCTTAGCGCTGTCCAGACATCACTGGTTCTGTGCACGCG AGACACGGATACCATGATGCATGGTGGTGACACTGGTGTTTTTATTAGCT AATGAGATTAAATTCATCTATGACAAGTTTTCAGTGTTGCAATTCTCCAT CTAAAAAGACTTACAAATACTTGATTAGATTTTTCGGAGAACTAAAAGTT TATAGAGTGGACTCTTCAAAACTTTTTTCAAACCAATTTTTCGAATGTCT GCTTGATTACAAAATTCCATAACTCGAACAAATTTTTGTTCTCCGTACCT GTTCGAGTTATAGAGGCTCCATTGTATAAGCCAGTGAGATATATGTCCCT CGCATCAATGGCTAATCTGAGGGGGTTACAATATTTATGACAGAGAGACT TAATTTGCTTATAAGGACTTTGTCTAAAACACTCTCGGTATAACTGTAAC ATAGGTAATTGACCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGC ATTGTGGGATTGTTTCGATTGTATTACAATAGAAATCTCTTAGGAATTCC TCGAGGGAATTCTATTGTAATACACTCGAAACAATCCCACAATGCATCGC TTTTTTAGAAAAATCAAAAACTCCGAGAAGGTCTATTGTGAGCTATGGTG ATACATATAATGCCCAGAGGCTGTGTTCCATTTGTCGAACATTTGTTCCT ATATTTTGAGACAGGGGTATTCATTTTGAAAATTTGAGCTCTACATTGCT TGAAAATGCACTAAATTGTGACAATTATGACAAATTAAAAAAGAAAAACT TTGCATTTTGCAAAATAACCATTTTTGAAAAAATTATTGGGGGGTGGNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCATTATC GAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGTTTGGATAT AGTCAAATTAGAACCTTACCATCTCCGTCACTGAAAAACACACATATATA AACTCGGCAATTTCATAATTGGAACACTTACGGGGATCACACATTTGTTC GAGTTATATAGTAAGGTTTATAAGGTATTGTTAATTGAATAAACCATAAA ATTTGTTCGAGTTAAGGAGATTTCGAGTTGTAGAAGTACGAGTTAAAGAA ATATTTTCGAAATCACAATATTTCAAAGTATTTAGAGAAGATACATTTTA AAACGTAAATTTGTGGTTGGCGGCGAATCAGGAAATGTTTAGTGTACGTG TTTGGTTAAATACAAGACAGACAATATATTTGACAACCATTAAATTAATA CAAAGCCATAAATAAGTATCCTCTCAAATATTTAGAAATGATGGGGCTTA AATACCACCGAAAGTTAATTGTTTGGCGTAGGCTGTGATTGGCAGCCGCT CAATTTCTTCCAAATTAAGTTACGTTTTACGTGACTGTAGGCGCTTACTG TCGCAGTGATGTCTCTTTAACTCGTACTTCTACAACTCGATTGTCCACTT AACTCGAACAAGTTTTAAGGTTCCTTCAGTTAACAATACCTTATAAACCT TACTATACAACTCGAAATCTCCATTACTCGAACAAATTCTATGGTTCCTT CAATTAACAATACCTTATAAACCTTACTATGTATCTCGAAATCTCCTTAA CTCGAACAAGTTTTATGGTCCCTTCAGTTAACAATGTCTTATAAACCTTA CTACATATCTCGAAATCTCCTTAACTCGAACAAATTTTATGGTTCCTTCA ATTAACAATACCTTATAAACCTTTCTATATAACTCAAACAAATGTGTGAT CCCCGTAAGTGTTCCAATTATGAAATTGCCGAGTTTATGTATGTGGGTTT TTCAGCGATGGAGATGGTAAGGTTCTAATTTGACTTACCGTCCTCGATAA TGCGGGTCAGAAGTGCAGGTTATTCTAAATCGCTTCAGTCACTTTACCGT CCTCAAAGGTGCAAATACATAAACTCGCTATTATTGGCCTTGCTGTAGAT GGGGAACTCTTTTTGACATTCGAATACATTGGAGTTTTCGAACACGCACG GTAAACTCGAATTTTGTTCGATGAATTACCGAGTTATGGAGATTGATTTG CAAGGAATAGACGATATCGGCTTTCCGAATTCTCCCCGAATGATTACCAA TGATATGCATTGCGCGGAAAGTCAACATCGTCCGTGAATCTTTTTGCGCA ATGCGTCATGGGTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCT ATTATTGTTATTTGAAGGAACCAGAAAAGTTGGTCGAATTAAGATTCGAG TTATAGAGGTTCAGGTTCTGAAAATTCTATTGTATTTACAGCGGAAAAGT TTGATGCTGGTGGCGAATCAGGAAATGTTTAGTTTACGTGTTTGGTTAAA TACAAGACAGACAATATATTTGACAACCATTCTATTAATACAAAGCCATA AATATAAGTATCCTCTCAAATATTTGAAAATAATGGAACACAAATACCGC CGAAAGTTAATGGTTTGGCGTAGGCTGTAATTGGCAGCCGCTCATTCTTT TCCTTTTCTTCCAAATTAAGTGACGTTTTACGTGACTGCAGGCGCTTGTT GCTGCAATAGAGTCTCATTAAGGGTTCTGGCCATAATCGAAAGATCCGTT ACGAGGTTTGAAGATAAAACTTTTGTTTTGAGTTCCTTGACACTTTTAAC AAAAAACTGTTTTTATAAGTTGTTTGTGAATTTATTCTATCAAAAGTAAT TGGCAATTTAATTACAAAAATGACGTTACAAACCTTAAAAAGACGATAAT AAAATGTTATATTGCCCTCTTTTACAAAAAGTGCTAAGTTGTAATGGGTA ATTAACCTTTTTGTTTCGAAATGTTTTTAAATTGTCTGCAAAAGATGGAA AAATTTTCTAAATTGATGTTTCAAAACTTATGACCCTTTTTGTACGAAAA ATTGGGACACTATTTTCAAGATTTTGAGACAAAGAAACTTTTACATAAAT TTCCGAAAATACATTGTTAGTTTAGTTAAAGATACACCATTTAGTGCAAA AATATTTTTTCTTCGCCGAAAATAAGCTCCTCAAAGTTGAAATACTTATC TTCGCAAATGTCTTCATTTTCTTCTTCGTCAAATTTTTTCATTGCGATCT TTAGATTTTTAGATTCAGGAATAGTTTGACTAACATAAAATATATAACAT GCCATAGTTTTGTTGGTTACATCAGTCAGAAAACACATTTTATATACGAC AATTATGAAAAATTCACTATGGTCAGAGCCCTTAAATCGAACTTCCACAA CTCATGTCTCCTTTAATTAACAATGCCTTATAAAACTTACTTTATAACTC AAAATTTCCTCAACTTGAAAAAATTTGTGTTCCCTGTACGTGTTCAAACT ATTTAATTATGGTATAGGTCATGTTTGAGTTCATTGGAAAGCTCTCTTCA AAATCTTTTCAGCATGTATTTTCTTTTGATTAGGTCCTAAATCGAAGCAG CCGAAAGAATCGTTCATAAATAAAGGAAATTTAGCTCGGCAGTACTGAAA AAAAACTTTGATCATATGACAGCTTCAGTAAAAACAAGATAAAACTTAAT CCGAAAATAGATTTTGCCATGGATCAATGTGTCAGATCACAAACAACAAA ATTTTCATTTTTTGAAAAAACTAATATTTTGCTTCACAACGAAAAAGTTA AGTAAGGAGAGTAAGGCGTTATTTTCTGAAAACAGAATGAATAGTCGTTT CATTTTTCTCGCCACCATGAAAAAGCATTTTTCGAAGATGAATGATTGCT TCATCTTTTCTCTTTGTTCCGTGTTTCGAAACAGTTCATCCTTACCTCAA TAAAAATTTAATGAATCCATTAAGAGTCATTAAAATTGACCACTAAAACC ACTAAACTGTATCAAAGTATTTTTAATTCGCTTTATTATGAGTAATTTTT GTGGTTAAAATAAACCCTGAAGCATCAAATTATGAGTGATAATGAACCCT AGCAAGAGATTGAAATGTGAGTGATACACTTTTTCGACCGTGTAGTCGCG CGGTCAGGCACGTGTCACTTTATTATTTAGCCATCCCCCTAAACTCGATC GAATCCTTTTTATACACCTTTTTCTATTGTCTCTAGGAGCAAAAAAAAAG ACTGGGTGGTTTTAGGGTGGTAAAACAGACAACAAAATGCCCTCGCGGCA ATTGGTGGCTGCGGTCAAAAAGGTATATTTGATTCACATCGTCGAATAAA CTTTTCGACCGCTAAAACGGACACAAAGGCCGAGGTTAGTTGAGAAATAA ACCTTAGATATGAGGTCAATCCCCCAGCGGGAGGGGGGGTACTTAGGCCA AAATGGGTGCCTTAAAGGGTCGGTTTTTTCACCTTTCAAAATCTCTCTAA GAGTCGAAATAGTCACGATTTTGAGAATTTTTTTTGTTTTTGAGAGTNGG GGGGGGGGGGGGGGGGGTACTTAGGCCAAAATGGGTGCCTTAAAGGGTCG GTTGTTTTTGAGAGAAAAAATTTATAAAAAAGTCTATCTAAGGGTAGGAC TTTTTTCAAAAGTGGAAGAGAATTTTTCAAAAAAGTCTCTCTGAAAGGGT CAAGGTTTGGAGGTCCTGCACACACATACCCATCATCCCGTAACCCTAGT ACTTCCCCCCAAAAGGGGGTCAATCATGCTATATAATACATTCGTCCATT AATTTTTTTAACCAAATTACTAGAGAGTTCAAAAATCATCGAAATTTCTT TGGAGCGTATCAAGCGTATTAAGTTTTTTGGAAAGTGCTCATGTAGGAAA AGGCTTAGAATCTCGCCAAATACCGGATGTTTTTGACTCAATTACAATGC ATTCTACTCTTCGAAGACAGTATTATTATCATGGCCATTTTGATATCAAT ATTTTAAATATGAACAGCAATTCTTGTACCGAAATTTTTATTACCTGAAA TAATGATGAAGCAATTTTGTGCCCACTATAGTAAAAAATGCCTACAATAT CACATTCCCAAGCATGATTTATGATTCTAAAATCTTCTGAGTCAAATGCA AATGATGATATTACAGTTTTTTCAGTTTATTCTTCAAATAGTTTGATTTC CTAAATCCATAAATAAAATGGTAGGAGGAGCTTGTACATTAGTACTTGAT TATTGGGAAATGAGTGGGTTATAAATATTTTGTCGCTACGGAATCAAAAT CTTTTTCCAACGAGTTTGTAATAAAAAAACTACTTATATTCATCTGAATA TTCGGTAATTACTGACATTTGTCAGCATTTACTACAAAATACACAGATTT AAAATATTAAAGGCTCGGACGAACCTTAGGTATAACACTTGGGATCCCAC CAAGACTTTAAGACATTCCCTTCTCACAGACCCGGTAGGATTTTTTCGGC CAGTAGGGGTATAAATAGCCAACTGAGACTCCATGGGGTTTGATATTTCC ATATTTTTTATGTCTGGGGATTTGGATTCCATTATTTTAAACAAGAAAAT TCAGTGAAGATGGGAAAAATAGCATGAAATTTTGCAGTGAGGATTTGTTT ATTTGATTGTTTTCAGTGGGGACAAAAATTGAAAAATAATTCTCCACAGG AGTCGATACTTTGGCAAATCTTTCCAGTAGGAAAGGGTCCCAGTGGTTTC TGGGGAATTCGTCAATAGCAAACAGGTTTATTGATACAGTCAGCTATATA TTAATATGGTAATTTTTGCTCTTCATCTTTGGTATTTTATACAATGATTA GATTGACACATGCACGATAAAATTTATATTATTGGTCGTCAGAGGTTGGT ATGTTCTTTGAAAACTCAACCTCTGAACTCAAGGTAATGATGTTTAAATT GCATAAGAATTGCGTAATATAATTGGTCCAGTGCGCAGCAGAATGGACCT TTAAAAAGTAACTGATCGAAAAGATTTTGTCTTTGTCGGGGCCTGTGCGC GCAATAAATTAACAAGTCCAGGCTAAACCAACCGCCGATCTAGAATTTTT GCCCCGCCTACCCGCGCGATATTTGACCTATGTTTTGGATTGAATTGATA GTAGAGTCAAATTTCACAGTTAGATTAAAGGGTTGTTTCAGGTAGGGTTA GGGCTAGGGTTGGGGCTAGGGTTGGGGATGGGAGTTAACCCCTGGTTAGG GTTTTAGCCCCCGGGTAGAGTTTGGAGTAAATACCATGTTTATAAGCAAC TTTGACCTCCTTAATGCAGTTGTGACTTGATGGCCGAGTGGTTAAAGTGC TGGCGCTCTAATCATAGGTGCTTTGTATATAGTGGGTTTAAATCCCATCA GCGGCAAAAGTTTCGAAATTTCGGGAAAGGCATCAAAAACTTTCAAAACT TAGCAGTACAAAGAAAGTGTCAAAGAATAGAAGCTCAGAGTGGAGGATGG GAAGGAAATTTTTTTGCGTCACTTAAGGAACCCGGTACGAACGACATTCG GTTATTGCCACGTCAGCTGGACCTTCACGCCGTTCCGGCTTCTTGTTTAC AGTTGAATTTGATGAAGTTTCAGTAGCGTAGACAGGAGGGGCGCAAAATT TGTGCAGGAGAGCAGATTTTTATTACACAGTAATCATCTTTTGTACCGTA AATAGATAATTACAGTGTCATAAGAGNTTGGGAACCACTCTCAATGGAAT TCTTAACTAATGAAGCTACCCAGCTGGCACACAACGTTGTTTGAGCATTT TTTTAACGTTATATGTACGTTGTGAACGTTAGAACAACGTCGAAACAACG TTGTGTGCCAGCTGGGTAACATTGTTTCCACATCTTAGTATAGAAGAATA CACAATTAACACGAATAGACTTCAATTAACAACGACATCACTTTTTTTAC ATTAGATTTCCCAGGTTTATCAATGAAGTCATTTGTCAACCTTTGGATCA ACCAACAACGAATGCAAAACAAGAATGTCTAACAGGCTCTGGAAATTGTG TGGAGAAAATTCTGAACATTCCATTTCGTAAAGACACTGAAAATCTTGGT GTTGATAGACTATTTGAATGGACAACTTTTAACCAACCTATTCGTGCAGC TTGTAATTGTGAAATTCACCAGGATTCACCCTTCGCTATTTTCGTGTGAA GTACCTTAAAAGAAGAATATCTTTTGGTAAATCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036580XLOC_036580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058028-exon-scaffold_304-1575043694:192497..192862TCONS_00058028-exon-scaffold_304-1575043694:192497..192862Clytia hemisphaericaexon
TCONS_00058028-exon-scaffold_304-1575043694:185276..185557TCONS_00058028-exon-scaffold_304-1575043694:185276..185557Clytia hemisphaericaexon
TCONS_00058028-exon-scaffold_304-1510915933:192497..192862TCONS_00058028-exon-scaffold_304-1510915933:192497..192862Clytia hemisphaericaexon
TCONS_00058028-exon-scaffold_304-1510915933:185276..185557TCONS_00058028-exon-scaffold_304-1510915933:185276..185557Clytia hemisphaericaexon
TCONS_00058028-exon-scaffold_304-1491911889:192497..192862TCONS_00058028-exon-scaffold_304-1491911889:192497..192862Clytia hemisphaericaexon
TCONS_00058028-exon-scaffold_304-1491911889:185276..185557TCONS_00058028-exon-scaffold_304-1491911889:185276..185557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:185276..192862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (1.45001 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.094704 0 0 0 0 0 0 0 0 0 0 0.281194 0 1.45001 0.183177 0.908536 0.170623 0 0.0898966 0 0 0.450313 0.303585 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
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