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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058092 ID=TCONS_00058092|Name=TCONS_00058092|organism=Clytia hemisphaerica|type=transcript|length=867bp
CAGACAGCCAAGAGAATAAAATCTCTTCAGAAAAACCAACCTTCTGGCAA
ATGGCGAAAGATTCGAACGATCAAAGTCGAATACACTCTGGTTCACCAGC
TATGGAGATACCAGACAAAAGAGTTCGTACGCAAGTTGGTCATACCTTGG
GGGATGGTCAAGTACATGTCAAAAATTCTGGAAGATAAACAAGTCAAACA
TAAACAAGCCATCCCAACAGAAGTCAAAGAAGAATTTGGTCTTCTGGATG
AACATTTTGATGTCAATGATATTGAAGTGTCCTGTTCAAACACTGGAAAC
CAAGGATTCGATGAATTCTATTTATTGTTTTGTGAAAAATGTGTGACTGA
AAGGATTCCAGAGTTTGAAACACACTATAAAGCTGAACTACCTGCTAACC
CGAAGATCGAGGACATTCTAGCTAGATGGGATCTATTGATGGAAAAAGAC
CCATCAAAGTCGGATGACATCGCCGTGTGTGGCACCTTATTACCGAATGC
ACCCGATATCCATGCTGGGCCTAACAGCCGCAAATTCATTCTCCGACCAG
CAGAGCACTGGAATAAGCGCCGCAAACCTGTTGTTGCTGACTCAATCCTC
AGCCTCTACTTTGAAGAGAGCAGCAAAtggtggggctgaaattgttgTCC
CAGCAAAGAAGAACACTTTCATTcctaaaacttcaaacaatgcACTAAAC
TTGGAAAGGACAATTGGTCATCACTTCTATACAAAGAAGCTTTACATATC
AAAAGACTGAAACCTAATTTAAACAACGGCCTAAAAGCCTCTAGAGAATT
ATACCTTTTTTAACTACTTTTTATTACGACCTTGTCTGTTaaccatttta
caattttaatagCCTTC Run BLAST on NCBI protein sequence of TCONS_00058092-protein >TCONS_00058092-protein ID=TCONS_00058092-protein|Name=TCONS_00058092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
QTAKRIKSLQKNQPSGKWRKIRTIKVEYTLVHQLWRYQTKEFVRKLVIPW
GMVKYMSKILEDKQVKHKQAIPTEVKEEFGLLDEHFDVNDIEVSCSNTGN
QGFDEFYLLFCEKCVTERIPEFETHYKAELPANPKIEDILARWDLLMEKD
PSKSDDIAVCGTLLPNAPDIHAGPNSRKFILRPAEHWNKRRKPVVADSIL
SLYFEESSKWWG Run BLAST on NCBI transcript from alignment at scaffold_305:219927..220998- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058092 ID=TCONS_00058092|Name=TCONS_00058092|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at scaffold_305:219927..220998- (Clytia hemisphaerica)
CAGACAGCCAAGAGAATAAAATCTCTTCAGAAAAACCAACCTTCTGGCAA
ATGGCGAAAGATTCGAACGATCAAAGTCGAATACACTCTGGTTCACCAGC
TATGGAGATACCAGACAAAAGAGTTCGTACGCAAGTTGGTCATACCTTGG
GGGATGGTCAAGTACATGTCAAAAATTCTGGAAGATAAACAAGTCAAACA
TAAACAAGCCATCCCAACAGAAGTCAAAGAAGAATTTGGTCTTCTGGATG
AACATTTTGATGTCAATGATATTGAAGTGTCCTGTTCAAACACTGGAAAC
CAAGGATTCGATGAATTCTATTTATTGTTTTGTGAAAAATGTGTGACTGA
AAGGATTCCAGAGTTTGAAAGTATGATCTTTTTGCTTTAATTTTCTTTCT
GTCTCAACTAATAGTTTGCGTTTCTATGAGATAGAGATGATATTACTTTT
TTAACATGCATAATCCATAAGTTACACAAATCTGATCTGGTTGGTATTGA
TAGGCACTCAATTTTAGACAGAATATCATTGTTTTAATCACTTCTCTAAA
AACTTTCCTTTCTTCTAACTTGTAGCACACTATAAAGCTGAACTACCTGC
TAACCCGAAGATCGAGGACATTCTAGCTAGATGGGATCTATTGATGGAAA
AAGACCCATCAAAGTCGGATGACATCGCCGTGTGTGGCACCTTATTACCG
AATGCACCCGATATCCATGCTGGGCCTAACAGCCGCAAATTCATTCTCCG
ACCAGCAGAGCACTGGAATAAGCGCCGCAAACCTGTTGTTGCTGACTCAA
TCCTCAGCCTCTACTTTGAAGAGAGCAGCAAATGGTGGGGCTGAAATTGT
TGTCCCAGCAAAGAAGAACACTTTCATTCCTAAAACTTCAAACAATGCAC
TAAACTTGGAAAGGACAATTGGTCATCACTTCTATACAAAGAAGCTTTAC
ATATCAAAAGACTGAAACCTAATTTAAACAACGGCCTAAAAGCCTCTAGA
GAATTATACCTTTTTTAACTACTTTTTATTACGACCTTGTCTGTTAACCA
TTTTACAATTTTAATAGCCTTC Coding sequence (CDS) from alignment at scaffold_305:219927..220998- >TCONS_00058092 ID=TCONS_00058092|Name=TCONS_00058092|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_305:219927..220998- (Clytia hemisphaerica)
CACACTATAAAGCTGAACTACCTGCTAACCCGAAGATCGAGGACATTCTA
GCTAGATGGGATCTATTGATGGAAAAAGACCCATCAAAGTCGGATGACAT
CGCCGTGTGTGGCACCTTATTACCGAATGCACCCGATATCCATGCTGGGC
CTAACAGCCGCAAATTCATTCTCCGACCAGCAGAGCACTGGAATAAGCGC
CGCAAACCTGTTGTTGCTGACTCAATCCTCAGCCTCTACTTTGAAGAGAG
CAGCAAATGGTGGGGCTGACAGACAGCCAAGAGAATAAAATCTCTTCAGA
AAAACCAACCTTCTGGCAAATGGCGAAAGATTCGAACGATCAAAGTCGAA
TACACTCTGGTTCACCAGCTATGGAGATACCAGACAAAAGAGTTCGTACG
CAAGTTGGTCATACCTTGGGGGATGGTCAAGTACATGTCAAAAATTCTGG
AAGATAAACAAGTCAAACATAAACAAGCCATCCCAACAGAAGTCAAAGAA
GAATTTGGTCTTCTGGATGAACATTTTGATGTCAATGATATTGAAGTGTC
CTGTTCAAACACTGGAAACCAAGGATTCGATGAATTCTATTTATTGTTTT
GTGAAAAATGTGTGACTGAAAGGATTCCAGAGTTTGAAACACACTATAAA
GCTGAACTACCTGCTAACCCGAAGATCGAGGACATTCTAGCTAGATGGGA
TCTATTGATGGAAAAAGACCCATCAAAGTCGGATGACATCGCCGTGTGTG
GCACCTTATTACCGAATGCACCCGATATCCATGCTGGGCCTAACAGCCGC
AAATTCATTCTCCGACCAGCAGAGCACTGGAATAAGCGCCGCAAACCTGT
TGTTGCTGACTCAATCCTCAGCCTCTACTTTGAAGAGAGCAGCAAATGGT
GGGGCTGACAGACAGCCAAGAGAATAAAATCTCTTCAGAAAAACCAACCT
TCTGGCAAATGGCGAAAGATTCGAACGATCAAAGTCGAATACACTCTGGT
TCACCAGCTATGGAGATACCAGACAAAAGAGTTCGTACGCAAGTTGGTCA
TACCTTGGGGGATGGTCAAGTACATGTCAAAAATTCTGGAAGATAAACAA
GTCAAACATAAACAAGCCATCCCAACAGAAGTCAAAGAAGAATTTGGTCT
TCTGGATGAACATTTTGATGTCAATGATATTGAAGTGTCCTGTTCAAACA
CTGGAAACCAAGGATTCGATGAATTCTATTTATTGTTTTGTGAAAAATGT
GTGACTGAAAGGATTCCAGAGTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058092-exon-scaffold_305-1575043694:220629..220998 | TCONS_00058092-exon-scaffold_305-1575043694:220629..220998 | Clytia hemisphaerica | exon |
| TCONS_00058092-exon-scaffold_305-1575043694:219927..220423 | TCONS_00058092-exon-scaffold_305-1575043694:219927..220423 | Clytia hemisphaerica | exon |
| TCONS_00058092-exon-scaffold_305-1510915933:220629..220998 | TCONS_00058092-exon-scaffold_305-1510915933:220629..220998 | Clytia hemisphaerica | exon |
| TCONS_00058092-exon-scaffold_305-1510915933:219927..220423 | TCONS_00058092-exon-scaffold_305-1510915933:219927..220423 | Clytia hemisphaerica | exon |
| TCONS_00058092-exon-scaffold_305-1491911889:220629..220998 | TCONS_00058092-exon-scaffold_305-1491911889:220629..220998 | Clytia hemisphaerica | exon |
| TCONS_00058092-exon-scaffold_305-1491911889:219927..220423 | TCONS_00058092-exon-scaffold_305-1491911889:219927..220423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:219927..220998 - |
Blast
The following BLAST results are available for this feature:
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