TCONS_00058092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058092
Unique NameTCONS_00058092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058092 ID=TCONS_00058092|Name=TCONS_00058092|organism=Clytia hemisphaerica|type=transcript|length=867bp
CAGACAGCCAAGAGAATAAAATCTCTTCAGAAAAACCAACCTTCTGGCAA
ATGGCGAAAGATTCGAACGATCAAAGTCGAATACACTCTGGTTCACCAGC
TATGGAGATACCAGACAAAAGAGTTCGTACGCAAGTTGGTCATACCTTGG
GGGATGGTCAAGTACATGTCAAAAATTCTGGAAGATAAACAAGTCAAACA
TAAACAAGCCATCCCAACAGAAGTCAAAGAAGAATTTGGTCTTCTGGATG
AACATTTTGATGTCAATGATATTGAAGTGTCCTGTTCAAACACTGGAAAC
CAAGGATTCGATGAATTCTATTTATTGTTTTGTGAAAAATGTGTGACTGA
AAGGATTCCAGAGTTTGAAACACACTATAAAGCTGAACTACCTGCTAACC
CGAAGATCGAGGACATTCTAGCTAGATGGGATCTATTGATGGAAAAAGAC
CCATCAAAGTCGGATGACATCGCCGTGTGTGGCACCTTATTACCGAATGC
ACCCGATATCCATGCTGGGCCTAACAGCCGCAAATTCATTCTCCGACCAG
CAGAGCACTGGAATAAGCGCCGCAAACCTGTTGTTGCTGACTCAATCCTC
AGCCTCTACTTTGAAGAGAGCAGCAAAtggtggggctgaaattgttgTCC
CAGCAAAGAAGAACACTTTCATTcctaaaacttcaaacaatgcACTAAAC
TTGGAAAGGACAATTGGTCATCACTTCTATACAAAGAAGCTTTACATATC
AAAAGACTGAAACCTAATTTAAACAACGGCCTAAAAGCCTCTAGAGAATT
ATACCTTTTTTAACTACTTTTTATTACGACCTTGTCTGTTaaccatttta
caattttaatagCCTTC
Run BLAST on NCBI

protein sequence of TCONS_00058092-protein

>TCONS_00058092-protein ID=TCONS_00058092-protein|Name=TCONS_00058092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
QTAKRIKSLQKNQPSGKWRKIRTIKVEYTLVHQLWRYQTKEFVRKLVIPW
GMVKYMSKILEDKQVKHKQAIPTEVKEEFGLLDEHFDVNDIEVSCSNTGN
QGFDEFYLLFCEKCVTERIPEFETHYKAELPANPKIEDILARWDLLMEKD
PSKSDDIAVCGTLLPNAPDIHAGPNSRKFILRPAEHWNKRRKPVVADSIL
SLYFEESSKWWG
Run BLAST on NCBI

transcript from alignment at scaffold_305:219927..220998-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058092 ID=TCONS_00058092|Name=TCONS_00058092|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at scaffold_305:219927..220998- (Clytia hemisphaerica)
CAGACAGCCAAGAGAATAAAATCTCTTCAGAAAAACCAACCTTCTGGCAA ATGGCGAAAGATTCGAACGATCAAAGTCGAATACACTCTGGTTCACCAGC TATGGAGATACCAGACAAAAGAGTTCGTACGCAAGTTGGTCATACCTTGG GGGATGGTCAAGTACATGTCAAAAATTCTGGAAGATAAACAAGTCAAACA TAAACAAGCCATCCCAACAGAAGTCAAAGAAGAATTTGGTCTTCTGGATG AACATTTTGATGTCAATGATATTGAAGTGTCCTGTTCAAACACTGGAAAC CAAGGATTCGATGAATTCTATTTATTGTTTTGTGAAAAATGTGTGACTGA AAGGATTCCAGAGTTTGAAAGTATGATCTTTTTGCTTTAATTTTCTTTCT GTCTCAACTAATAGTTTGCGTTTCTATGAGATAGAGATGATATTACTTTT TTAACATGCATAATCCATAAGTTACACAAATCTGATCTGGTTGGTATTGA TAGGCACTCAATTTTAGACAGAATATCATTGTTTTAATCACTTCTCTAAA AACTTTCCTTTCTTCTAACTTGTAGCACACTATAAAGCTGAACTACCTGC TAACCCGAAGATCGAGGACATTCTAGCTAGATGGGATCTATTGATGGAAA AAGACCCATCAAAGTCGGATGACATCGCCGTGTGTGGCACCTTATTACCG AATGCACCCGATATCCATGCTGGGCCTAACAGCCGCAAATTCATTCTCCG ACCAGCAGAGCACTGGAATAAGCGCCGCAAACCTGTTGTTGCTGACTCAA TCCTCAGCCTCTACTTTGAAGAGAGCAGCAAATGGTGGGGCTGAAATTGT TGTCCCAGCAAAGAAGAACACTTTCATTCCTAAAACTTCAAACAATGCAC TAAACTTGGAAAGGACAATTGGTCATCACTTCTATACAAAGAAGCTTTAC ATATCAAAAGACTGAAACCTAATTTAAACAACGGCCTAAAAGCCTCTAGA GAATTATACCTTTTTTAACTACTTTTTATTACGACCTTGTCTGTTAACCA TTTTACAATTTTAATAGCCTTC

Coding sequence (CDS) from alignment at scaffold_305:219927..220998-

>TCONS_00058092 ID=TCONS_00058092|Name=TCONS_00058092|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_305:219927..220998- (Clytia hemisphaerica)
CACACTATAAAGCTGAACTACCTGCTAACCCGAAGATCGAGGACATTCTA
GCTAGATGGGATCTATTGATGGAAAAAGACCCATCAAAGTCGGATGACAT
CGCCGTGTGTGGCACCTTATTACCGAATGCACCCGATATCCATGCTGGGC
CTAACAGCCGCAAATTCATTCTCCGACCAGCAGAGCACTGGAATAAGCGC
CGCAAACCTGTTGTTGCTGACTCAATCCTCAGCCTCTACTTTGAAGAGAG
CAGCAAATGGTGGGGCTGACAGACAGCCAAGAGAATAAAATCTCTTCAGA
AAAACCAACCTTCTGGCAAATGGCGAAAGATTCGAACGATCAAAGTCGAA
TACACTCTGGTTCACCAGCTATGGAGATACCAGACAAAAGAGTTCGTACG
CAAGTTGGTCATACCTTGGGGGATGGTCAAGTACATGTCAAAAATTCTGG
AAGATAAACAAGTCAAACATAAACAAGCCATCCCAACAGAAGTCAAAGAA
GAATTTGGTCTTCTGGATGAACATTTTGATGTCAATGATATTGAAGTGTC
CTGTTCAAACACTGGAAACCAAGGATTCGATGAATTCTATTTATTGTTTT
GTGAAAAATGTGTGACTGAAAGGATTCCAGAGTTTGAAACACACTATAAA
GCTGAACTACCTGCTAACCCGAAGATCGAGGACATTCTAGCTAGATGGGA
TCTATTGATGGAAAAAGACCCATCAAAGTCGGATGACATCGCCGTGTGTG
GCACCTTATTACCGAATGCACCCGATATCCATGCTGGGCCTAACAGCCGC
AAATTCATTCTCCGACCAGCAGAGCACTGGAATAAGCGCCGCAAACCTGT
TGTTGCTGACTCAATCCTCAGCCTCTACTTTGAAGAGAGCAGCAAATGGT
GGGGCTGACAGACAGCCAAGAGAATAAAATCTCTTCAGAAAAACCAACCT
TCTGGCAAATGGCGAAAGATTCGAACGATCAAAGTCGAATACACTCTGGT
TCACCAGCTATGGAGATACCAGACAAAAGAGTTCGTACGCAAGTTGGTCA
TACCTTGGGGGATGGTCAAGTACATGTCAAAAATTCTGGAAGATAAACAA
GTCAAACATAAACAAGCCATCCCAACAGAAGTCAAAGAAGAATTTGGTCT
TCTGGATGAACATTTTGATGTCAATGATATTGAAGTGTCCTGTTCAAACA
CTGGAAACCAAGGATTCGATGAATTCTATTTATTGTTTTGTGAAAAATGT
GTGACTGAAAGGATTCCAGAGTTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036605XLOC_036605Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058092-proteinTCONS_00058092-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058092-exon-scaffold_305-1575043694:220629..220998TCONS_00058092-exon-scaffold_305-1575043694:220629..220998Clytia hemisphaericaexon
TCONS_00058092-exon-scaffold_305-1575043694:219927..220423TCONS_00058092-exon-scaffold_305-1575043694:219927..220423Clytia hemisphaericaexon
TCONS_00058092-exon-scaffold_305-1510915933:220629..220998TCONS_00058092-exon-scaffold_305-1510915933:220629..220998Clytia hemisphaericaexon
TCONS_00058092-exon-scaffold_305-1510915933:219927..220423TCONS_00058092-exon-scaffold_305-1510915933:219927..220423Clytia hemisphaericaexon
TCONS_00058092-exon-scaffold_305-1491911889:220629..220998TCONS_00058092-exon-scaffold_305-1491911889:220629..220998Clytia hemisphaericaexon
TCONS_00058092-exon-scaffold_305-1491911889:219927..220423TCONS_00058092-exon-scaffold_305-1491911889:219927..220423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:219927..220998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.177637 0.212477 0.801878 0.285386 0.393952 0.218503 0.152369 0.110259 0.0813614 0 0 0 0 0 0 0 0 0 0 0.216247 0.413316 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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