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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058431 ID=TCONS_00058431|Name=TCONS_00058431|organism=Clytia hemisphaerica|type=transcript|length=827bp
aaaaatttgaatgcCGTAGCTGTGATTCtaaaggGTTTTTGTAGAGATGG
AACAAGAAGCTAAAAACCCAGAATCAAaatggctttttcccaaagAAAAC
CCCCTGGTATATTCAAAACAAGCAGAAACTATTGATATCCATGATAAAAG
CACATTATGTTATTGTGATAAAATGCAAGGACAATCAGAACATAAAACGA
ACTTCAAAGATGATCATCTTGTAACGCCTTCACCAGCTTTCGACTTTATT
TTGATGGTTATGAGTGTGTCGGCTTCAATACTGATGTTGCTAGCTTGTTA
TGTAATGAGAGGAACGATGATGTATTCTGATGATGAATTTGAACAGAAGA
ATTTGGTGTATGAGATTCAACCAAGTGACATTCCAGTTGGCACACGTCAA
ACATTCTTCGTTGCTTTCTGCTTTTCGATCAttggaaacttttttacgaT
ATATGGAAATGAAAATGAGAAGAAATGCAGAGCATTGAAATCAGCATTCT
CTATTTGTAGTGgagTAATTGCTTTGTTGGGCATATACAGTGTCATGAAA
TTATATCACGAAAACATATTATTCATCCCGAATTCGAAGGCGCTTTCTCT
AGCATGGCTTTCATGTATGATGAACTTATGTTCTGGCTTGGTTGAATTCA
TGAACATTTATTTTGGCGGAGAAACTATTGATGAGAAGTCATCAGTTGTT
GAAAGTGGAATGAATAAAACTTCAAAGCTAGATTTAAACGATTTTCTAGA
CTAGTTACTTATTCTATTACAAATCTTTGTACATAcgaatttttatttat
tgagTTTGAAATATATTAGAACATCGC Run BLAST on NCBI protein sequence of TCONS_00058431-protein >TCONS_00058431-protein ID=TCONS_00058431-protein|Name=TCONS_00058431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MEQEAKNPESKWLFPKENPLVYSKQAETIDIHDKSTLCYCDKMQGQSEHK
TNFKDDHLVTPSPAFDFILMVMSVSASILMLLACYVMRGTMMYSDDEFEQ
KNLVYEIQPSDIPVGTRQTFFVAFCFSIIGNFFTIYGNENEKKCRALKSA
FSICSGVIALLGIYSVMKLYHENILFIPNSKALSLAWLSCMMNLCSGLVE
FMNIYFGGETIDEKSSVVESGMNKTSKLDLNDFLD Run BLAST on NCBI transcript from alignment at scaffold_311:221544..226698+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058431 ID=TCONS_00058431|Name=TCONS_00058431|organism=Clytia hemisphaerica|type=transcript|length=5155bp|location=Sequence derived from alignment at scaffold_311:221544..226698+ (Clytia hemisphaerica)
aaaaatttgaatgcCGTAGCTGTGATTCtaaagggtaggtttttcaggcC
TACCAAAGACCTAAATTTCACCGGGTATaagtatttttctttcaaacttC
AGTGGAAGAATTTCACGCGCGCACAGTTaagttaatatttttttgagatC
AAACTATAAAgcacataaggcttcgatgaccaaagtattaagaacaagct
aaaaacattttaaggctttgatgCGCGGGCTCTAAAACACATGATTTCTT
AGGAAcatttacaaaaataacaacattataaggacatttttaggcttaaa
actaaaaaagttaagaacattccatgttcttataaaaaaatgtgtagatg
GTCGTTTTTCAATCGAGTTCATCGACTTCGATTTCGAATAAGTTTCTATT
GTTGTTCTTTTTACAGTTTAGGTTTTCATAATCAGGATAAAACTTtcttt
ccaacgatgtataataATAATCCTATTCAGCTCTCGGGTTAAGAAAAAAC
GGTATTTTCGGATTCTGCTCCCACCCAGACATCATTACTTCCATTTTTCA
ACTGCTTTAAAAGATCATGTTATGTATTTTGTCAGAATGAAAAGTCTCTA
TAAAAGCATGGTTAGAATTGTTACATTCACTGATTCAGCATTAACTCTAA
TTTTTAATACATACTGCTATatacacattgtttttataagaacatccata
aTTTTCAAAGCATTAGGATGTTcctaatatgttcttattttaacctTTCT
GTGAGCATTTTATTATGTTCTTACATGgcttgttcttatgaaaaaacgtg
tattgtatAATACTATCTACACCATACTATATCGTTATTTGAAACATCTA
CCTTTTCAACGTAGTGTAAATATAGTTTACCAATTTTTCTTTGTCATCTT
AATGTGTGCGGGTGTTTAATGATTGATGCTATTAATTTTAAATAGCGATT
TCTGGTCATAAGATAAAAGAAGTTAATTAATGTAGCATTTCTATGCTATA
TGATATGTTTTATCATCAAAGTTTTTTATACGAGAAAAAGCAATTTTATT
GAGGAGAAATAGAGTGGAGAAAAAATGCCAAACTTTGACGATGCTTGAAA
GGGTTGAATCAAGTTACTTATAATATGGGTGATGCAGATTATACATGGGT
TAACGGGTTAAAAATCCTGTGgggatattttgaaaactttaccGATCTTT
ATTATCTAAGGCTAGTCCAGTTTAGTACAGGGTTTCCCGAAAAGTATCGC
GAGTAGTGTCACttttatagaaagaaagtttttgtgtgtgtttcaccTAA
ATTTTCAATGTCTATCAAAGTTTCTCtttcagaatcatgttcgaactcga
tactttttttcgggacgcCTTGTATAGTGTACCAATCAAATGTAATAtac
atttcttttataagagcatccttcggactttgaaaactttttttctttga
gTTTTAACCCTTAGGAGGCGAAAGACGTATATATACgctttgaaaaggtc
attttaccgatccacagtcttttggtcataactcctaaccacttgagatt
cagagaaaaacaCGATTTTTTGTAGTTGAgggaaagagctttccaacgat
accaaatttgataccggaatcgtttgtcctggtcgagaaattgcctttga
aagaataaatagaccttttttcaaagaggacgtcctgttgaaTAGCCATA
AAAACAATGATAGAGCCATGCATAATTACTGtatcatgcatattgtaata
attatgcatggttttatcattgtttttctgctggactacataattattca
acagggtggcctctttaaaaaaaggtctatttccagaaaaaaatgatgaa
ctttttggcctttttcaaaaaagttagcggctttgaaaggttaagccaaa
aaatgttcttaaaatgttcttcctttcaaatattttgtgagtatttcagt
ttatttttcttacaagtCGGGTTTTTTAGAGACTGCAAGCcttaaaaata
cttaaaatatctaaaacttcCTTTACTTTTACAGATATCttaaatttgaa
attcgaatcaAAAGGTTTTTGTAGAGATGGAACAAGAAGCTAAAAACCCA
GAATCAAaatggctttttcccaaagAAAACCCCCTGGTATATTCAAAACA
AGCAGAAACTATTGATATCCATGATAAAAGCACATTATGTTATTGTGATA
AAATGCAAGGACAATCAGAACATAAAACGAACTTCAAAGATGATCATCTT
GTAACGCCTTCACCAGCTTTCGACTTTATTTTGATGGTTATGAGTGTGTC
GGCTTCAATACTGATGTTGCTAGCTTGTTATGTAATGAGAGGAACGATGA
TGTATTCTGATGATGAATTTGAACAGAAGAATTTGGTGTATGAGATTCAA
CCAAGTGAGTGATTTTTTTGCGAAaggatcccagctggcacacaacgttg
tttcaacgttaaatggacgttaaatggacgttgtgaacactagataaacg
ttgaaacaatgttttgCGTCGGCTGAATGTTTTTTCACGGTGGGAATAGG
CGGAAACTACCCTTTCTTTCGAACGATGGGATTTGATGAAATTAGGTCTA
CTTCCAGTGATGGAACCCTGGGTTTATCCGGAAAATAGGAgcttagcaaa
aaacagtcgaATTTTCGGAATAATCAATATCTATGTCGCTGATAGTCGAA
ATGTGAAAAGAGCTGAAGACTTTCTATGGTGTGTCAAAATAGTGGAAAAC
TCCTTCAGTGTAGTGATAAACTGAAATTCAAGGAATATTTCAAAGCCATG
GTACGTTACAATGCAAGTTTTCGACTTTTAGCTATAGCAGAATAAATCAT
GTTTGGTGTTCGTTGGAATGCTCTTTTCAGTTTCTTTCACTTTTCTGAAT
TGAAATTATTGGCAGCCGAAATAATTGTTGCCTGTAGCGTAGCTAATAGg
agcgcaaaatttgtgtatgaGAGCAGACACTGTAATTGCCACTGTTCATG
AATGTAGGAAATTTTGCCGGGCAGTATTGACAGAGTTAATTAAAATCTGg
attaaagtctgttcacaaTAAGTGAAATACTAGTAAGTTAATAAgcgatt
gaccccaaaaaatagcagaaaacagcagaaaacagggtttttagacgtca
atcagcttataaatttgtttgatatcttttgactgaattatcatttttta
gaaatttttttacagtgatgacctcctaagatcaaagaatttctccagtg
aaaatgaaagttattgcacttttctacaagattttcatttttttcttctt
catttcatcttcgtttttagaatgtttttaaagactttttgattttaaat
tgttccactcacaaatatctctccaacgataccaaatttatgaagatCAA
AGCACTCCTTCAAAacttataggtaaaagaaaaaagagtgcacacttatc
gtgaatagactttagatagATTGTTTCGTGTTTGAAGATACACAGAAACC
TAACCAAAAATAATCGGGTCTAGATTCATACAAAATTTTTACCGTTCTCA
TGGCTAATAGACTTCGCTCAAAAATCAAACGTACCAAAATCGCAAATATA
Cccctcccagctggcacaaaacattgtttcaacgttcatataacgctatc
tggacgttatgaacattagataaacgttaattCAACGATGTGTGCCAACT
GGGCTGTGTCCGCTGGGAGCCCAGCCCCGTTTCAtctccattcgaaattc
aatgtttaaaaattgcacttcaaaaccattgccactgaactttttaacct
tggaaaaaaggaatttctattcccattgggatttcataggaatttttatc
cccacttagaaaaaaaatttcaccggggCTTTGagtgtgagacaggggtg
taaaaataGTTGGATAGTGATGTGGTGTACATCCActatgaaaaatttta
aaaccaaacTGACATTGAATTTGGGAGGGTTTTGTTGAACAGTCAGCTTG
GTTCGTATTTTACTATATACGTTCTTTTATAAAAGAACGTATATAGTAAA
ATACGAACCAAaaattgtggatgttcttataaataagaacatccacaatt
tTTGNCAGTCAGCTTGGTTCGTATTTCACTatacacgttcttttataaga
acatccacaatttttgaaaccttcagatgttcttaactttttgagattta
agcctaaaaatgtttaacTTGATAACATgttattatatagtttgttctta
taaaaaacatgtattcggTATTTAGCATTTTgggattgttttcatttaat
tGTTGAGCGAACTCTTGAATTGTTATGAAATTTCTTCAGAGAGATGTTTT
CTTTGAATTCTTTATAGGTGACATTCCAGTTGGCACACGTCAAACATTCT
TCGTTGCTTTCTGCTTTTCGATCAttggaaacttttttacgaTATATGGA
AATGAAAATGAGAAGAAATGCAGAGCATTGAAATCAGCATTCTCTATTTG
TAGTGGTAAGTGTATACAGAGTATCcttaaaaacacccctgtgtcacaaa
tcCGCTggaaccccagccccactggaaaattaagcaaagatttcgtcccc
ggttggaaaatacccttgaattttagccccactaggaaatcgactttgat
ttcatccccactcgaaattccatgtttaaaagtTGCACATACTCCAAAAC
CAACCCCACTGGGTTTTTTTCACCTATCCTCCCTTTGGGAAATCTATTGG
GActttgagacagggatgtccAATCATTATTGATTGACCATGAGTGGAGA
AAAAATCCTGCGTTAacctttgttttcttttttatttcaggagTAATTGC
TTTGTTGGGCATATACAGTGTCATGAAATTATATCACGAAAACATATTAT
TCATCCCGAATTCGAAGGCGCTTTCTCTAGCATGGCTTTCATGTATGATG
AACTTATGTTCTGGCTTGGTTGAATTCATGAACATTTATTTTGGCGGAGA
AACTATTGATGAGAAGTCATCAGTTGTTGAAAGTGGAATGAATAAAACTT
CAAAGCTAGATTTAAACGATTTTCTAGACTAGTTACTTATTCTATTACAA
ATCTTTGTACATAcgaatttttatttattgagTTTGAAATATATTAGAAC
ATCGC Coding sequence (CDS) from alignment at scaffold_311:221544..226698+ >TCONS_00058431 ID=TCONS_00058431|Name=TCONS_00058431|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_311:221544..226698+ (Clytia hemisphaerica)
ATGGAACAAGAAGCTAAAAACCCAGAATCAAaatggctttttcccaaagA
AAACCCCCTGGTATATTCAAAACAAGCAGAAACTATTGATATCCATGATA
AAAGCACATTATGTTATTGTGATAAAATGCAAGGACAATCAGAACATAAA
ACGAACTTCAAAGATGATCATCTTGTAACGCCTTCACCAGCTTTCGACTT
TATTTTGATGGTTATGAGTGTGTCGGCTTCAATACTGATGTTGCTAGCTT
GTTATGTAATGAGAGGAACGATGATGTATTCTGATGATGAATTTGAACAG
AAGAATTTGGTGTATGAGATTCAACCAAGTGACATTCCAGTTGGCACACG
TCAAACATTCTTCGTTGCTTTCTGCTTTTCGATCAttggaaactttttta
cgaTATATGGAAATGAAAATGAGAAGAAATGCAGAGCATTGAAATCAGCA
TTCTCTATTTGTAGTGgagTAATTGCTTTGTTGGGCATATACAGTGTCAT
GAAATTATATCACGAAAACATATTATTCATCCCGAATTCGAAGGCGCTTT
CTCTAGCATGGCTTTCATGTATGATGAACTTATGTTCTGGCTTGGTTGAA
TTCATGAACATTTATTTTGGCGGAGAAACTATTGATGAGAAGTCATCAGT
TGTTGAAAGTGGAATGAATAAAACTTCAAAGCTAGATTTAAACGATTTTC
TAGACTAGATGGAACAAGAAGCTAAAAACCCAGAATCAAaatggcttttt
cccaaagAAAACCCCCTGGTATATTCAAAACAAGCAGAAACTATTGATAT
CCATGATAAAAGCACATTATGTTATTGTGATAAAATGCAAGGACAATCAG
AACATAAAACGAACTTCAAAGATGATCATCTTGTAACGCCTTCACCAGCT
TTCGACTTTATTTTGATGGTTATGAGTGTGTCGGCTTCAATACTGATGTT
GCTAGCTTGTTATGTAATGAGAGGAACGATGATGTATTCTGATGATGAAT
TTGAACAGAAGAATTTGGTGTATGAGATTCAACCAAGTGACATTCCAGTT
GGCACACGTCAAACATTCTTCGTTGCTTTCTGCTTTTCGATCAttggaaa
cttttttacgaTATATGGAAATGAAAATGAGAAGAAATGCAGAGCATTGA
AATCAGCATTCTCTATTTGTAGTGgagTAATTGCTTTGTTGGGCATATAC
AGTGTCATGAAATTATATCACGAAAACATATTATTCATCCCGAATTCGAA
GGCGCTTTCTCTAGCATGGCTTTCATGTATGATGAACTTATGTTCTGGCT
TGGTTGAATTCATGAACATTTATTTTGGCGGAGAAACTATTGATGAGAAG
TCATCAGTTGTTGAAAGTGGAATGAATAAAACTTCAAAGCTAGATTTAAA
CGATTTTCTAGACTAGATGGAACAAGAAGCTAAAAACCCAGAATCAAaat
ggctttttcccaaagAAAACCCCCTGGTATATTCAAAACAAGCAGAAACT
ATTGATATCCATGATAAAAGCACATTATGTTATTGTGATAAAATGCAAGG
ACAATCAGAACATAAAACGAACTTCAAAGATGATCATCTTGTAACGCCTT
CACCAGCTTTCGACTTTATTTTGATGGTTATGAGTGTGTCGGCTTCAATA
CTGATGTTGCTAGCTTGTTATGTAATGAGAGGAACGATGATGTATTCTGA
TGATGAATTTGAACAGAAGAATTTGGTGTATGAGATTCAACCAAGTGACA
TTCCAGTTGGCACACGTCAAACATTCTTCGTTGCTTTCTGCTTTTCGATC
AttggaaacttttttacgaTATATGGAAATGAAAATGAGAAGAAATGCAG
AGCATTGAAATCAGCATTCTCTATTTGTAGTGgagTAATTGCTTTGTTGG
GCATATACAGTGTCATGAAATTATATCACGAAAACATATTATTCATCCCG
AATTCGAAGGCGCTTTCTCTAGCATGGCTTTCATGTATGATGAACTTATG
TTCTGGCTTGGTTGAATTCATGAACATTTATTTTGGCGGAGAAACTATTG
ATGAGAAGTCATCAGTTGTTGAAAGTGGAATGAATAAAACTTCAAAGCTA
GATTTAAACGATTTTCTAGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058431-exon-scaffold_311-1491911889:221544..221577 | TCONS_00058431-exon-scaffold_311-1491911889:221544..221577 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1510915933:221544..221577 | TCONS_00058431-exon-scaffold_311-1510915933:221544..221577 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1575043694:221544..221577 | TCONS_00058431-exon-scaffold_311-1575043694:221544..221577 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1491911889:223608..223947 | TCONS_00058431-exon-scaffold_311-1491911889:223608..223947 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1510915933:223608..223947 | TCONS_00058431-exon-scaffold_311-1510915933:223608..223947 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1575043694:223608..223947 | TCONS_00058431-exon-scaffold_311-1575043694:223608..223947 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1491911889:225911..226048 | TCONS_00058431-exon-scaffold_311-1491911889:225911..226048 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1510915933:225911..226048 | TCONS_00058431-exon-scaffold_311-1510915933:225911..226048 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1575043694:225911..226048 | TCONS_00058431-exon-scaffold_311-1575043694:225911..226048 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1491911889:226384..226698 | TCONS_00058431-exon-scaffold_311-1491911889:226384..226698 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1510915933:226384..226698 | TCONS_00058431-exon-scaffold_311-1510915933:226384..226698 | Clytia hemisphaerica | exon |
| TCONS_00058431-exon-scaffold_311-1575043694:226384..226698 | TCONS_00058431-exon-scaffold_311-1575043694:226384..226698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:221544..226698 + |
Blast
The following BLAST results are available for this feature:
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