TCONS_00058431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058431
Unique NameTCONS_00058431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058431 ID=TCONS_00058431|Name=TCONS_00058431|organism=Clytia hemisphaerica|type=transcript|length=827bp
aaaaatttgaatgcCGTAGCTGTGATTCtaaaggGTTTTTGTAGAGATGG
AACAAGAAGCTAAAAACCCAGAATCAAaatggctttttcccaaagAAAAC
CCCCTGGTATATTCAAAACAAGCAGAAACTATTGATATCCATGATAAAAG
CACATTATGTTATTGTGATAAAATGCAAGGACAATCAGAACATAAAACGA
ACTTCAAAGATGATCATCTTGTAACGCCTTCACCAGCTTTCGACTTTATT
TTGATGGTTATGAGTGTGTCGGCTTCAATACTGATGTTGCTAGCTTGTTA
TGTAATGAGAGGAACGATGATGTATTCTGATGATGAATTTGAACAGAAGA
ATTTGGTGTATGAGATTCAACCAAGTGACATTCCAGTTGGCACACGTCAA
ACATTCTTCGTTGCTTTCTGCTTTTCGATCAttggaaacttttttacgaT
ATATGGAAATGAAAATGAGAAGAAATGCAGAGCATTGAAATCAGCATTCT
CTATTTGTAGTGgagTAATTGCTTTGTTGGGCATATACAGTGTCATGAAA
TTATATCACGAAAACATATTATTCATCCCGAATTCGAAGGCGCTTTCTCT
AGCATGGCTTTCATGTATGATGAACTTATGTTCTGGCTTGGTTGAATTCA
TGAACATTTATTTTGGCGGAGAAACTATTGATGAGAAGTCATCAGTTGTT
GAAAGTGGAATGAATAAAACTTCAAAGCTAGATTTAAACGATTTTCTAGA
CTAGTTACTTATTCTATTACAAATCTTTGTACATAcgaatttttatttat
tgagTTTGAAATATATTAGAACATCGC
Run BLAST on NCBI

protein sequence of TCONS_00058431-protein

>TCONS_00058431-protein ID=TCONS_00058431-protein|Name=TCONS_00058431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MEQEAKNPESKWLFPKENPLVYSKQAETIDIHDKSTLCYCDKMQGQSEHK
TNFKDDHLVTPSPAFDFILMVMSVSASILMLLACYVMRGTMMYSDDEFEQ
KNLVYEIQPSDIPVGTRQTFFVAFCFSIIGNFFTIYGNENEKKCRALKSA
FSICSGVIALLGIYSVMKLYHENILFIPNSKALSLAWLSCMMNLCSGLVE
FMNIYFGGETIDEKSSVVESGMNKTSKLDLNDFLD
Run BLAST on NCBI

transcript from alignment at scaffold_311:221544..226698+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058431 ID=TCONS_00058431|Name=TCONS_00058431|organism=Clytia hemisphaerica|type=transcript|length=5155bp|location=Sequence derived from alignment at scaffold_311:221544..226698+ (Clytia hemisphaerica)
aaaaatttgaatgcCGTAGCTGTGATTCtaaagggtaggtttttcaggcC TACCAAAGACCTAAATTTCACCGGGTATaagtatttttctttcaaacttC AGTGGAAGAATTTCACGCGCGCACAGTTaagttaatatttttttgagatC AAACTATAAAgcacataaggcttcgatgaccaaagtattaagaacaagct aaaaacattttaaggctttgatgCGCGGGCTCTAAAACACATGATTTCTT AGGAAcatttacaaaaataacaacattataaggacatttttaggcttaaa actaaaaaagttaagaacattccatgttcttataaaaaaatgtgtagatg GTCGTTTTTCAATCGAGTTCATCGACTTCGATTTCGAATAAGTTTCTATT GTTGTTCTTTTTACAGTTTAGGTTTTCATAATCAGGATAAAACTTtcttt ccaacgatgtataataATAATCCTATTCAGCTCTCGGGTTAAGAAAAAAC GGTATTTTCGGATTCTGCTCCCACCCAGACATCATTACTTCCATTTTTCA ACTGCTTTAAAAGATCATGTTATGTATTTTGTCAGAATGAAAAGTCTCTA TAAAAGCATGGTTAGAATTGTTACATTCACTGATTCAGCATTAACTCTAA TTTTTAATACATACTGCTATatacacattgtttttataagaacatccata aTTTTCAAAGCATTAGGATGTTcctaatatgttcttattttaacctTTCT GTGAGCATTTTATTATGTTCTTACATGgcttgttcttatgaaaaaacgtg tattgtatAATACTATCTACACCATACTATATCGTTATTTGAAACATCTA CCTTTTCAACGTAGTGTAAATATAGTTTACCAATTTTTCTTTGTCATCTT AATGTGTGCGGGTGTTTAATGATTGATGCTATTAATTTTAAATAGCGATT TCTGGTCATAAGATAAAAGAAGTTAATTAATGTAGCATTTCTATGCTATA TGATATGTTTTATCATCAAAGTTTTTTATACGAGAAAAAGCAATTTTATT GAGGAGAAATAGAGTGGAGAAAAAATGCCAAACTTTGACGATGCTTGAAA GGGTTGAATCAAGTTACTTATAATATGGGTGATGCAGATTATACATGGGT TAACGGGTTAAAAATCCTGTGgggatattttgaaaactttaccGATCTTT ATTATCTAAGGCTAGTCCAGTTTAGTACAGGGTTTCCCGAAAAGTATCGC GAGTAGTGTCACttttatagaaagaaagtttttgtgtgtgtttcaccTAA ATTTTCAATGTCTATCAAAGTTTCTCtttcagaatcatgttcgaactcga tactttttttcgggacgcCTTGTATAGTGTACCAATCAAATGTAATAtac atttcttttataagagcatccttcggactttgaaaactttttttctttga gTTTTAACCCTTAGGAGGCGAAAGACGTATATATACgctttgaaaaggtc attttaccgatccacagtcttttggtcataactcctaaccacttgagatt cagagaaaaacaCGATTTTTTGTAGTTGAgggaaagagctttccaacgat accaaatttgataccggaatcgtttgtcctggtcgagaaattgcctttga aagaataaatagaccttttttcaaagaggacgtcctgttgaaTAGCCATA AAAACAATGATAGAGCCATGCATAATTACTGtatcatgcatattgtaata attatgcatggttttatcattgtttttctgctggactacataattattca acagggtggcctctttaaaaaaaggtctatttccagaaaaaaatgatgaa ctttttggcctttttcaaaaaagttagcggctttgaaaggttaagccaaa aaatgttcttaaaatgttcttcctttcaaatattttgtgagtatttcagt ttatttttcttacaagtCGGGTTTTTTAGAGACTGCAAGCcttaaaaata cttaaaatatctaaaacttcCTTTACTTTTACAGATATCttaaatttgaa attcgaatcaAAAGGTTTTTGTAGAGATGGAACAAGAAGCTAAAAACCCA GAATCAAaatggctttttcccaaagAAAACCCCCTGGTATATTCAAAACA AGCAGAAACTATTGATATCCATGATAAAAGCACATTATGTTATTGTGATA AAATGCAAGGACAATCAGAACATAAAACGAACTTCAAAGATGATCATCTT GTAACGCCTTCACCAGCTTTCGACTTTATTTTGATGGTTATGAGTGTGTC GGCTTCAATACTGATGTTGCTAGCTTGTTATGTAATGAGAGGAACGATGA TGTATTCTGATGATGAATTTGAACAGAAGAATTTGGTGTATGAGATTCAA CCAAGTGAGTGATTTTTTTGCGAAaggatcccagctggcacacaacgttg tttcaacgttaaatggacgttaaatggacgttgtgaacactagataaacg ttgaaacaatgttttgCGTCGGCTGAATGTTTTTTCACGGTGGGAATAGG CGGAAACTACCCTTTCTTTCGAACGATGGGATTTGATGAAATTAGGTCTA CTTCCAGTGATGGAACCCTGGGTTTATCCGGAAAATAGGAgcttagcaaa aaacagtcgaATTTTCGGAATAATCAATATCTATGTCGCTGATAGTCGAA ATGTGAAAAGAGCTGAAGACTTTCTATGGTGTGTCAAAATAGTGGAAAAC TCCTTCAGTGTAGTGATAAACTGAAATTCAAGGAATATTTCAAAGCCATG GTACGTTACAATGCAAGTTTTCGACTTTTAGCTATAGCAGAATAAATCAT GTTTGGTGTTCGTTGGAATGCTCTTTTCAGTTTCTTTCACTTTTCTGAAT TGAAATTATTGGCAGCCGAAATAATTGTTGCCTGTAGCGTAGCTAATAGg agcgcaaaatttgtgtatgaGAGCAGACACTGTAATTGCCACTGTTCATG AATGTAGGAAATTTTGCCGGGCAGTATTGACAGAGTTAATTAAAATCTGg attaaagtctgttcacaaTAAGTGAAATACTAGTAAGTTAATAAgcgatt gaccccaaaaaatagcagaaaacagcagaaaacagggtttttagacgtca atcagcttataaatttgtttgatatcttttgactgaattatcatttttta gaaatttttttacagtgatgacctcctaagatcaaagaatttctccagtg aaaatgaaagttattgcacttttctacaagattttcatttttttcttctt catttcatcttcgtttttagaatgtttttaaagactttttgattttaaat tgttccactcacaaatatctctccaacgataccaaatttatgaagatCAA AGCACTCCTTCAAAacttataggtaaaagaaaaaagagtgcacacttatc gtgaatagactttagatagATTGTTTCGTGTTTGAAGATACACAGAAACC TAACCAAAAATAATCGGGTCTAGATTCATACAAAATTTTTACCGTTCTCA TGGCTAATAGACTTCGCTCAAAAATCAAACGTACCAAAATCGCAAATATA Cccctcccagctggcacaaaacattgtttcaacgttcatataacgctatc tggacgttatgaacattagataaacgttaattCAACGATGTGTGCCAACT GGGCTGTGTCCGCTGGGAGCCCAGCCCCGTTTCAtctccattcgaaattc aatgtttaaaaattgcacttcaaaaccattgccactgaactttttaacct tggaaaaaaggaatttctattcccattgggatttcataggaatttttatc cccacttagaaaaaaaatttcaccggggCTTTGagtgtgagacaggggtg taaaaataGTTGGATAGTGATGTGGTGTACATCCActatgaaaaatttta aaaccaaacTGACATTGAATTTGGGAGGGTTTTGTTGAACAGTCAGCTTG GTTCGTATTTTACTATATACGTTCTTTTATAAAAGAACGTATATAGTAAA ATACGAACCAAaaattgtggatgttcttataaataagaacatccacaatt tTTGNCAGTCAGCTTGGTTCGTATTTCACTatacacgttcttttataaga acatccacaatttttgaaaccttcagatgttcttaactttttgagattta agcctaaaaatgtttaacTTGATAACATgttattatatagtttgttctta taaaaaacatgtattcggTATTTAGCATTTTgggattgttttcatttaat tGTTGAGCGAACTCTTGAATTGTTATGAAATTTCTTCAGAGAGATGTTTT CTTTGAATTCTTTATAGGTGACATTCCAGTTGGCACACGTCAAACATTCT TCGTTGCTTTCTGCTTTTCGATCAttggaaacttttttacgaTATATGGA AATGAAAATGAGAAGAAATGCAGAGCATTGAAATCAGCATTCTCTATTTG TAGTGGTAAGTGTATACAGAGTATCcttaaaaacacccctgtgtcacaaa tcCGCTggaaccccagccccactggaaaattaagcaaagatttcgtcccc ggttggaaaatacccttgaattttagccccactaggaaatcgactttgat ttcatccccactcgaaattccatgtttaaaagtTGCACATACTCCAAAAC CAACCCCACTGGGTTTTTTTCACCTATCCTCCCTTTGGGAAATCTATTGG GActttgagacagggatgtccAATCATTATTGATTGACCATGAGTGGAGA AAAAATCCTGCGTTAacctttgttttcttttttatttcaggagTAATTGC TTTGTTGGGCATATACAGTGTCATGAAATTATATCACGAAAACATATTAT TCATCCCGAATTCGAAGGCGCTTTCTCTAGCATGGCTTTCATGTATGATG AACTTATGTTCTGGCTTGGTTGAATTCATGAACATTTATTTTGGCGGAGA AACTATTGATGAGAAGTCATCAGTTGTTGAAAGTGGAATGAATAAAACTT CAAAGCTAGATTTAAACGATTTTCTAGACTAGTTACTTATTCTATTACAA ATCTTTGTACATAcgaatttttatttattgagTTTGAAATATATTAGAAC ATCGC

Coding sequence (CDS) from alignment at scaffold_311:221544..226698+

>TCONS_00058431 ID=TCONS_00058431|Name=TCONS_00058431|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_311:221544..226698+ (Clytia hemisphaerica)
ATGGAACAAGAAGCTAAAAACCCAGAATCAAaatggctttttcccaaagA
AAACCCCCTGGTATATTCAAAACAAGCAGAAACTATTGATATCCATGATA
AAAGCACATTATGTTATTGTGATAAAATGCAAGGACAATCAGAACATAAA
ACGAACTTCAAAGATGATCATCTTGTAACGCCTTCACCAGCTTTCGACTT
TATTTTGATGGTTATGAGTGTGTCGGCTTCAATACTGATGTTGCTAGCTT
GTTATGTAATGAGAGGAACGATGATGTATTCTGATGATGAATTTGAACAG
AAGAATTTGGTGTATGAGATTCAACCAAGTGACATTCCAGTTGGCACACG
TCAAACATTCTTCGTTGCTTTCTGCTTTTCGATCAttggaaactttttta
cgaTATATGGAAATGAAAATGAGAAGAAATGCAGAGCATTGAAATCAGCA
TTCTCTATTTGTAGTGgagTAATTGCTTTGTTGGGCATATACAGTGTCAT
GAAATTATATCACGAAAACATATTATTCATCCCGAATTCGAAGGCGCTTT
CTCTAGCATGGCTTTCATGTATGATGAACTTATGTTCTGGCTTGGTTGAA
TTCATGAACATTTATTTTGGCGGAGAAACTATTGATGAGAAGTCATCAGT
TGTTGAAAGTGGAATGAATAAAACTTCAAAGCTAGATTTAAACGATTTTC
TAGACTAGATGGAACAAGAAGCTAAAAACCCAGAATCAAaatggcttttt
cccaaagAAAACCCCCTGGTATATTCAAAACAAGCAGAAACTATTGATAT
CCATGATAAAAGCACATTATGTTATTGTGATAAAATGCAAGGACAATCAG
AACATAAAACGAACTTCAAAGATGATCATCTTGTAACGCCTTCACCAGCT
TTCGACTTTATTTTGATGGTTATGAGTGTGTCGGCTTCAATACTGATGTT
GCTAGCTTGTTATGTAATGAGAGGAACGATGATGTATTCTGATGATGAAT
TTGAACAGAAGAATTTGGTGTATGAGATTCAACCAAGTGACATTCCAGTT
GGCACACGTCAAACATTCTTCGTTGCTTTCTGCTTTTCGATCAttggaaa
cttttttacgaTATATGGAAATGAAAATGAGAAGAAATGCAGAGCATTGA
AATCAGCATTCTCTATTTGTAGTGgagTAATTGCTTTGTTGGGCATATAC
AGTGTCATGAAATTATATCACGAAAACATATTATTCATCCCGAATTCGAA
GGCGCTTTCTCTAGCATGGCTTTCATGTATGATGAACTTATGTTCTGGCT
TGGTTGAATTCATGAACATTTATTTTGGCGGAGAAACTATTGATGAGAAG
TCATCAGTTGTTGAAAGTGGAATGAATAAAACTTCAAAGCTAGATTTAAA
CGATTTTCTAGACTAGATGGAACAAGAAGCTAAAAACCCAGAATCAAaat
ggctttttcccaaagAAAACCCCCTGGTATATTCAAAACAAGCAGAAACT
ATTGATATCCATGATAAAAGCACATTATGTTATTGTGATAAAATGCAAGG
ACAATCAGAACATAAAACGAACTTCAAAGATGATCATCTTGTAACGCCTT
CACCAGCTTTCGACTTTATTTTGATGGTTATGAGTGTGTCGGCTTCAATA
CTGATGTTGCTAGCTTGTTATGTAATGAGAGGAACGATGATGTATTCTGA
TGATGAATTTGAACAGAAGAATTTGGTGTATGAGATTCAACCAAGTGACA
TTCCAGTTGGCACACGTCAAACATTCTTCGTTGCTTTCTGCTTTTCGATC
AttggaaacttttttacgaTATATGGAAATGAAAATGAGAAGAAATGCAG
AGCATTGAAATCAGCATTCTCTATTTGTAGTGgagTAATTGCTTTGTTGG
GCATATACAGTGTCATGAAATTATATCACGAAAACATATTATTCATCCCG
AATTCGAAGGCGCTTTCTCTAGCATGGCTTTCATGTATGATGAACTTATG
TTCTGGCTTGGTTGAATTCATGAACATTTATTTTGGCGGAGAAACTATTG
ATGAGAAGTCATCAGTTGTTGAAAGTGGAATGAATAAAACTTCAAAGCTA
GATTTAAACGATTTTCTAGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036819XLOC_036819Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058431-proteinTCONS_00058431-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058431-exon-scaffold_311-1491911889:221544..221577TCONS_00058431-exon-scaffold_311-1491911889:221544..221577Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1510915933:221544..221577TCONS_00058431-exon-scaffold_311-1510915933:221544..221577Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1575043694:221544..221577TCONS_00058431-exon-scaffold_311-1575043694:221544..221577Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1491911889:223608..223947TCONS_00058431-exon-scaffold_311-1491911889:223608..223947Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1510915933:223608..223947TCONS_00058431-exon-scaffold_311-1510915933:223608..223947Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1575043694:223608..223947TCONS_00058431-exon-scaffold_311-1575043694:223608..223947Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1491911889:225911..226048TCONS_00058431-exon-scaffold_311-1491911889:225911..226048Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1510915933:225911..226048TCONS_00058431-exon-scaffold_311-1510915933:225911..226048Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1575043694:225911..226048TCONS_00058431-exon-scaffold_311-1575043694:225911..226048Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1491911889:226384..226698TCONS_00058431-exon-scaffold_311-1491911889:226384..226698Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1510915933:226384..226698TCONS_00058431-exon-scaffold_311-1510915933:226384..226698Clytia hemisphaericaexon
TCONS_00058431-exon-scaffold_311-1575043694:226384..226698TCONS_00058431-exon-scaffold_311-1575043694:226384..226698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:221544..226698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.7648 32.2452 28.5998 31.6688 4.79986 2.87527 13.8018 14.0266 9.91709 8.38902 8.54972 4.89382 3.16893 2.10146 2.77081 2.83358 4.86979 6.18401 1.58666 2.23505 7.99267 8.04075 28.8301 25.373 4.49941 5.33582 8.18655 5.46057 10.5771 11.8151
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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