TCONS_00058665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058665
Unique NameTCONS_00058665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058665 ID=TCONS_00058665|Name=TCONS_00058665|organism=Clytia hemisphaerica|type=transcript|length=1472bp
CTGGAACTTATAAACAAACTTCGGCGGGAATTTTTCAAATCAGTTTGGTA
CTTTTTTGGAGCGAGTAGGGGTCTTTGGGACGAAACGAGCTAGAATTACA
CATACAAACACTTAAAAGATTTCAAACAGCACAACACAAAGACAAAACAC
ACACGCTCGATCCTGTTTCTCATCCCAACTTcttctgcaaaatttaaaag
actGGTGCTGCACTGTCACTGACATACAACAAAGCTGATATACAGATTCA
AAACATGAGGAGCTATacgaagaaaaatttgaaagaggTCGAGGAACAAA
TGACCGGCGGAGGACAACGTCCAACCATTAATCATTACATGAAATGTCGG
AAAAGAAGAGTATCAGCAAGACAATTAGAAAAACGTCAACTGTCCATCGT
CAAAACACCTGTCCACGAAAAAGGAGACTTTGCACCACTACCTATCGAAG
TCATGTTTCGGATTATCAAGTTTATCCCGTTGGTTTCATTGGGATCGCTG
ACGTTAACGTCAAAACAAATGCGAGACATCATCATTATGTACGTTCACAG
TCAAGAAGGAGCACGACGTGTCATTCCAGTCGTTCAAAATATTCCTGAAC
ATTCGGACCTAGACTCTGACGAATACAAATCAGAATCTAAGAGGTGTCAC
ACTCACTACAAACAGCTAGGTGTCATGCTGAAACGGACAACGTGTCTTTT
TTCAACAAGAGATCGATTGGCTGAAGTTGGAAAGATTCTTGATCAGCTAC
GAGATTCGCACGTTAGAATATGCACCAAACTTGGAAGCGACCTTGCATAC
AGTTGCTATGGCATCTTTTTACATGCTTTCATAGCTGGATGGGAGGAtga
tgaaaaatctaaatcctTTCAAGCAATCAAAGGTGCATCTTTATTAGAAG
AAAGAATTGGATACTTAATGAAGTCAAAGCCTGGGACCATGCCAGGTTAT
GAAAGATACATCCGAGTTTTCTGCCGAGAAATCTTCCTCAACAAAGCAAG
CAAAACTGAAAAAGGATTTTGGATGGCACAGATTTTGAAACCATATCCCA
TTTTCTTTCAAGCAAGACTTCTCTTCATTCTGTATGGTCCAACTGATCTT
GAAAATGATGACTTAATTTGGGATGAAATGGCTGTTTCATCAGACATTGC
AACTGAAGATTTAAAAGAACTTGCAGAAGGGATGGTGGCTTTACAAGATG
ACCAAAGAGGTTTGTGGAGCGCAGATGATATCATAAGCATCTTTGATGAA
ATCACTACAATTTCAATGGATTGGGATATCGAGAACATTGCTGTCTTTAT
GAAAGAATGTGGAGACACAATGTGTTGTGAAGTGTTGGGAAATAAAGCTA
TCAATGGANGTTAGGTAAAAATCAAATTGTCCTTAATCACAAGAAACGCA
TCGTGGCGAGATTAAGGTCATTGCGCTACTCATATGTCGATACTATATTC
CATAAAAGACTATAAATGCCCG
Run BLAST on NCBI

protein sequence of TCONS_00058665-protein

>TCONS_00058665-protein ID=TCONS_00058665-protein|Name=TCONS_00058665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MRSYTKKNLKEVEEQMTGGGQRPTINHYMKCRKRRVSARQLEKRQLSIVK
TPVHEKGDFAPLPIEVMFRIIKFIPLVSLGSLTLTSKQMRDIIIMYVHSQ
EGARRVIPVVQNIPEHSDLDSDEYKSESKRCHTHYKQLGVMLKRTTCLFS
TRDRLAEVGKILDQLRDSHVRICTKLGSDLAYSCYGIFLHAFIAGWEDDE
KSKSFQAIKGASLLEERIGYLMKSKPGTMPGYERYIRVFCREIFLNKASK
TEKGFWMAQILKPYPIFFQARLLFILYGPTDLENDDLIWDEMAVSSDIAT
EDLKELAEGMVALQDDQRGLWSADDIISIFDEITTISMDWDIENIAVFMK
ECGDTMCCEVLGNKAINGX
Run BLAST on NCBI

transcript from alignment at scaffold_312:180205..185230+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058665 ID=TCONS_00058665|Name=TCONS_00058665|organism=Clytia hemisphaerica|type=transcript|length=5026bp|location=Sequence derived from alignment at scaffold_312:180205..185230+ (Clytia hemisphaerica)
CTGGAACTTATAAACAAACTTCGGCGGGAATTTTTCAAATCAGTTTGGTA
CTTTTTTGGAGCGAGTAGGGGTCTTTGGGACGAAACGAGCTAGAATTACA
CATACAAACACTTAAAAGATTTCAAACAGCACAACACAAAGACAAAACAC
ACACGCTCGATCCTGTTTCTCATCCCAACTTcttctgcaaaatttaaaag
actGGTGCTGCACTGTCACTGACATACAACAAAGCTGATATACAGATTCA
AAACATGAGGAGCTGTAAGTTGTTCACGTTGCCCTATTTGCACAATTTTT
ggtctattttgtttttgctttctGCTAGCCAGTTTTGGTAGTCCATGCCT
CCAGTATAATTTATGACCGACGGACTTAAAACAAAATTGCTTCGCTTGAT
TAAATAAATAAAGTcaaatcagttttttttgtgaaaattgggaaaatctA
TATACAGAAGACTTAGCGAAAGCTTTTGGAtttaagtttaaattttctcg
cagatttggcaaaaaaaagagGAGTCCTCGTGCCCCACAGACTTTTATTC
AAAACCTCAGTGGTGCAGTGGCATAATGATACACAGTTGATACACCCATC
CACTCAGTGTGTGTCAGTCGCACACTCCCCGTGCCCGTGGTGCGTCGACT
TTCAAGGATAGTACCCCTCCCTGGTGGCTTTTATCTTAAACCGGTGAGCC
CCCCCTCGATGGTTTATGATGATGGTATTTTTCCAGTGATTCCATCTTTT
TGTACTATAAAGTTTTTAGCAAATTTCGTGAATCTTTACAGTAACTCTCg
ctataattcgaactcgaacaaCGGGGAATCTTACAGTTGGCTCCCTCTAA
TTTGATCTCTTtgggacaaaatattttcttcgagttatagagaatAAATT
CTAATTACAGTGAGTAAATTAGACCACTTTCtggctgaggggaccaatat
tttagttcgaattatagaaagattcgaataatcgAATTAGAGTGAGTGTG
TCTgtattttgttcgaattactgagatatttgaattatagaaagtattta
aaAAGGATTTCTCAGTGATGGGAATTGGAAGCAAGTGAATTAtagaaaaa
gattcgaataaacGAGAGTTCACTGTATTTAGAAAATTGTTTCTATTTCA
TTTACACAGATacgaagaaaaatttgaaagaggTCGAGGAACAAATGACC
GGCGGAGGACAACGTCCAACCATTAATCATTACATGAAATGTCGGAAAAG
AAGAGTATCAGCAAGACAATTAGAAAAACGTCAACTGTCCATCGTCAAAA
CACCTGTCCACGAAAAAGGAGACTTTGCACCACTACCTATCGAAGTTTGT
TTTATATCCGTTTAGAAAATCTAAGATTACTtttcaaatcagaaagtttt
ttttttatcaaaatttgataCACTGGTAATTGCAAACTTgcgattttaaa
attattttttgctgcGTGTCGCCTTACAAAATTGCCCTCGGGTGTTTAGT
CCGTTGAATTTAAATTAGATTTAGGAAGCGTAGTTTGAATGAAATATAAA
ACAcaacttctttttatttcaccttttttttcattagtttttttgatttt
ttttcggtaatCGCATCATCttcattttgaccattttcttgaattttcag
GTCATGTTTCGGATTATCAAGTTTATCCCGTTGGTTTCATTGGGATCGCT
GACGTTAACGTCAAAACAAATGCGAGACATCATCATTATGTACGTTCACA
GTCAAGAAGGAGCACGACGTGTCATTCCAGTCGTTCAAAATATTCCTGAA
CATTCGGACCTAGACTCTGACGAATACAAATCAGAATCTAAGAGGTGTCA
CACTCACTACAAACAGCTAGGTATATGTCCCTTGTGGTACTTTCGTAAAA
GTGATCTCTTAAAATCAATGCGCGTTTCGTGATAGAATTCATTCACTACT
ACTACTTTGATATGAAGCTTTCTTGGTGCCGTTAAGTTTATAGGACTACA
CGGACAGAGCAGAAAGTTATCTACTGTATACTCCATTTATTCTTCAAAAA
AGAGAGGACAAAGATACACCGCTGGGAATAGTTGCTATAAACTGATTTTC
AAACTTCAGGTGTCATGCTGAAACGGACAACGTGTCTTTTTTCAACAAGA
GATCGATTGGCTGAAGTTGGAAAGATTCTTGATCAGGTTAGAAGTTTGAA
TCTTGGTATTTTCTACGTTCAGTGTAGTTTAGCTTTAAAATTTAAGAACT
TAACCTGTTATGTTATATGAAGAAATGCCACAAAGGCTCAAAACTCCTAC
CGAAGGTCGAAATACCCAACGGGCGCTAGTCATTATATCATCATATTTTT
TTCCAGCTACGAGATTCGCACGTTAGAATATGCACCAAACTTGGAAGCGA
CCTTGCATACAGTTGCTATGGCATCTTTTTACATGCTTTCATAGCTGGAT
GGGAGGAtgatgaaaaatctaaatcctTTCAAGCAATCAAAGGTATATAT
AATCTTAAATAATGTTAGTATTGGATTATTTTTATTGGGCAATACAcgaa
tttcctattagcagactCATGTAGAAAATTCACGAAAAAACGCACAAATT
GCACACATAAATATatataaacatatttttttcaaatatccaACGTATGA
GGTGATCTTTGCATTCTCAACCAATCAagagctttactcgacgtttttcc
gacttttttacatgaatctgtTAATAGGAAATTTGTGTATTTTGACAAAC
TTCAACTCGAGTCGAAAAATAACACTCCTGTCTCATCCTCTCTAGTCACC
TAGTGATTATCTTTTAACTAGTGGGTTTAAAATTGATGAGCTAAATATCA
TGAGAAAAGGAAAATGTAATAGGTCGACCTTGCAACTTCTATTGCTTgtg
ggggggggcgtacggtatttcggtattgcggaaatcgacccttttttctt
cggaatttcggaaatcggacAAAactccttcggtatttcggaattctgaa
attgtttcggtatcggaaatccatgaatttttgcttcgaaatttcggtat
tataaagtttttatccccctttttcggaattcatacatgtgatgaaaaat
tagttaaaacgagggaaaataccccaaaaaatcggtatcagaattgcaag
tattttttcacggaatttcgtaaattttggcaaaattattcggtatttcg
gaaatcgcaaaccccgtacacCCCCCTTGCTTCGCTATTGCTTACGGTTT
TAAAACGTGGGAAATACGATTCAACCCGAAGTGCTTTTACCACCAGAGTC
CCCACCAATTATGTGACACGGGATGCTGTAACGTCTGTCACAAACAAGTA
ATGACAAACGTATTACTATTACCAGTTTCTGGTAACCGTGTTCTTGAAAC
CAGAGTTTGTTATTTTGTTTGCCCTCTACTTAAATCTTTCGTGATTTAGG
TGCATCTTTATTAGAAGAAAGAATTGGATACTTAATGAAGTCAAAGCCTG
GGACCATGCCAGGTTATGAAAGGTGAGAGCTAatttaaattgatttaaaa
GGCTCTGTCAGAAGTTAAAAGAACATCTTTAGCACACACTTGCTCAAAGA
AAAAGCttgtatattttttgatttttctcaaagaaaaaagcttgtatctt
tttgattttcttactTTAGATACATCCGAGTTTTCTGCCGAGAAATCTTC
CTCAACAAAGCAAGCAAAACTGAAAAAGGATTTTGGATGGCACAGATTTT
GAAACCATATCCCATTTTCTTTCAAGCAAGACTTCTCTTCATTCTGTATG
GTCCAACTGATCTTGAAAATGGTAAGGGCACATCATGTTGTTATGGCATA
TACCAATTACTAGTTCCAAGCTATCCGATGGCCATTTGTCTAGTAATTAC
GTAATGTTCAAAAGGATAACCATAANTCAAGATATCCGATGGACATTTGT
CTAGTGATTACGTAATGATAAAAAGGATAATCATAAATATCGTTATTTTA
TATTTGATCTGATTTGATAATTCATAATATGAATCTCATTTGCAGAATCG
CTCGAGGAATACCGGTATTCGTGGTATTCTTGACAATAAAACTGGTAATT
TATAGCCGTGTACTGACTGCTGTGTATTTAAAGGTAAAAATAGAGTAata
tttcgaaactttttgTTTCAGATGACTTAATTTGGGATGAAATGGCTGTT
TCATCAGACATTGCAACTGAAGATTTAAAAGAACTTGCAGAAGGGATGGT
GGCTTTACAAGATGACCAAAGAGGTTTGTGGAGCGCAGATGATATCATAA
GCATCTTTGATGAAATCACTAGTAAGTTATATAATCAAAAAGCTAGGCTA
ACCTTTATACTTGTTTTCCAGTTCAGAGCTTTTTCAACTAATTTCAAGGA
ATTCGAATAACAGTCTCGTAACCACGACGGGGGGTTACTTGGGCAAAAAG
GGTTACGGGGTACCGCTGGTCAGCCAAATACCTTTTTTCACcgaggtagg
gtcgcaaaacgCAAAAAAAGGGTAACTTTTTAAGGAAATTTGGgggaaaa
aaggaaatttttggaaacTCAGTCCCGtttagggtcacttttttcgcaaa
ttttgcccaaattttcagaaaaacgagtcccatttttcgaacctcggcGG
TCCACGCCCTGGAACCCTGATCATCATTATTCTCCTCAAGCAAATTAGAT
CAAGTTatacaaaaacatttaaatcTAGTACGGAAGAGAACAACTCTTGG
CACTTATCATATTTTAAATTAGTCATTATGAATTTAAATGCATATAATAT
GTTCATTTTAGCAATTTCAATGGATTGGGATATCGAGAACATTGCTGTCT
TTATGAAAGAATGTGGAGACACAATGTGTTGTGAAGTGTTGGGAAATAAA
GCTATCAATGGANGTTAGGTAAAAATCAAATTGTCCTTAATCACAAGAAA
CGCATCGTGGCGAGATTAAGGTCATTGCGCTACTCATATGTCGATACTAT
ATTCCATAAAAGACTATAAATGCCCG

Coding sequence (CDS) from alignment at scaffold_312:180205..185230+

>TCONS_00058665 ID=TCONS_00058665|Name=TCONS_00058665|organism=Clytia hemisphaerica|type=CDS|length=9990bp|location=Sequence derived from alignment at scaffold_312:180205..185230+ (Clytia hemisphaerica)
ATGAGGAGCTATacgaagaaaaatttgaaagaggTCGAGGAACAAATGAC
CGGCGGAGGACAACGTCCAACCATTAATCATTACATGAAATGTCGGAAAA
GAAGAGTATCAGCAAGACAATTAGAAAAACGTCAACTGTCCATCGTCAAA
ACACCTGTCCACGAAAAAGGAGACTTTGCACCACTACCTATCGAAGTCAT
GTTTCGGATTATCAAGTTTATCCCGTTGGTTTCATTGGGATCGCTGACGT
TAACGTCAAAACAAATGCGAGACATCATCATTATGTACGTTCACAGTCAA
GAAGGAGCACGACGTGTCATTCCAGTCGTTCAAAATATTCCTGAACATTC
GGACCTAGACTCTGACGAATACAAATCAGAATCTAAGAGGTGTCACACTC
ACTACAAACAGCTAGGTGTCATGCTGAAACGGACAACGTGTCTTTTTTCA
ACAAGAGATCGATTGGCTGAAGTTGGAAAGATTCTTGATCAGCTACGAGA
TTCGCACGTTAGAATATGCACCAAACTTGGAAGCGACCTTGCATACAGTT
GCTATGGCATCTTTTTACATGCTTTCATAGCTGGATGGGAGGAtgatgaa
aaatctaaatcctTTCAAGCAATCAAAGGTGCATCTTTATTAGAAGAAAG
AATTGGATACTTAATGAAGTCAAAGCCTGGGACCATGCCAGGTTATGAAA
GATACATCCGAGTTTTCTGCCGAGAAATCTTCCTCAACAAAGCAAGCAAA
ACTGAAAAAGGATTTTGGATGGCACAGATTTTGAAACCATATCCCATTTT
CTTTCAAGCAAGACTTCTCTTCATTCTGTATGGTCCAACTGATCTTGAAA
ATGATGACTTAATTTGGGATGAAATGGCTGTTTCATCAGACATTGCAACT
GAAGATTTAAAAGAACTTGCAGAAGGGATGGTGGCTTTACAAGATGACCA
AAGAGGTTTGTGGAGCGCAGATGATATCATAAGCATCTTTGATGAAATCA
CTACAATTTCAATGGATTGGGATATCGAGAACATTGCTGTCTTTATGAAA
GAATGTGGAGACACAATGTGTTGTGAAGTGTTGGGAAATAAAGCTATCAA
TGGANGTTAGATGAGGAGCTATacgaagaaaaatttgaaagaggTCGAGG
AACAAATGACCGGCGGAGGACAACGTCCAACCATTAATCATTACATGAAA
TGTCGGAAAAGAAGAGTATCAGCAAGACAATTAGAAAAACGTCAACTGTC
CATCGTCAAAACACCTGTCCACGAAAAAGGAGACTTTGCACCACTACCTA
TCGAAGTCATGTTTCGGATTATCAAGTTTATCCCGTTGGTTTCATTGGGA
TCGCTGACGTTAACGTCAAAACAAATGCGAGACATCATCATTATGTACGT
TCACAGTCAAGAAGGAGCACGACGTGTCATTCCAGTCGTTCAAAATATTC
CTGAACATTCGGACCTAGACTCTGACGAATACAAATCAGAATCTAAGAGG
TGTCACACTCACTACAAACAGCTAGGTGTCATGCTGAAACGGACAACGTG
TCTTTTTTCAACAAGAGATCGATTGGCTGAAGTTGGAAAGATTCTTGATC
AGCTACGAGATTCGCACGTTAGAATATGCACCAAACTTGGAAGCGACCTT
GCATACAGTTGCTATGGCATCTTTTTACATGCTTTCATAGCTGGATGGGA
GGAtgatgaaaaatctaaatcctTTCAAGCAATCAAAGGTGCATCTTTAT
TAGAAGAAAGAATTGGATACTTAATGAAGTCAAAGCCTGGGACCATGCCA
GGTTATGAAAGATACATCCGAGTTTTCTGCCGAGAAATCTTCCTCAACAA
AGCAAGCAAAACTGAAAAAGGATTTTGGATGGCACAGATTTTGAAACCAT
ATCCCATTTTCTTTCAAGCAAGACTTCTCTTCATTCTGTATGGTCCAACT
GATCTTGAAAATGATGACTTAATTTGGGATGAAATGGCTGTTTCATCAGA
CATTGCAACTGAAGATTTAAAAGAACTTGCAGAAGGGATGGTGGCTTTAC
AAGATGACCAAAGAGGTTTGTGGAGCGCAGATGATATCATAAGCATCTTT
GATGAAATCACTACAATTTCAATGGATTGGGATATCGAGAACATTGCTGT
CTTTATGAAAGAATGTGGAGACACAATGTGTTGTGAAGTGTTGGGAAATA
AAGCTATCAATGGANGTTAGATGAGGAGCTATacgaagaaaaatttgaaa
gaggTCGAGGAACAAATGACCGGCGGAGGACAACGTCCAACCATTAATCA
TTACATGAAATGTCGGAAAAGAAGAGTATCAGCAAGACAATTAGAAAAAC
GTCAACTGTCCATCGTCAAAACACCTGTCCACGAAAAAGGAGACTTTGCA
CCACTACCTATCGAAGTCATGTTTCGGATTATCAAGTTTATCCCGTTGGT
TTCATTGGGATCGCTGACGTTAACGTCAAAACAAATGCGAGACATCATCA
TTATGTACGTTCACAGTCAAGAAGGAGCACGACGTGTCATTCCAGTCGTT
CAAAATATTCCTGAACATTCGGACCTAGACTCTGACGAATACAAATCAGA
ATCTAAGAGGTGTCACACTCACTACAAACAGCTAGGTGTCATGCTGAAAC
GGACAACGTGTCTTTTTTCAACAAGAGATCGATTGGCTGAAGTTGGAAAG
ATTCTTGATCAGCTACGAGATTCGCACGTTAGAATATGCACCAAACTTGG
AAGCGACCTTGCATACAGTTGCTATGGCATCTTTTTACATGCTTTCATAG
CTGGATGGGAGGAtgatgaaaaatctaaatcctTTCAAGCAATCAAAGGT
GCATCTTTATTAGAAGAAAGAATTGGATACTTAATGAAGTCAAAGCCTGG
GACCATGCCAGGTTATGAAAGATACATCCGAGTTTTCTGCCGAGAAATCT
TCCTCAACAAAGCAAGCAAAACTGAAAAAGGATTTTGGATGGCACAGATT
TTGAAACCATATCCCATTTTCTTTCAAGCAAGACTTCTCTTCATTCTGTA
TGGTCCAACTGATCTTGAAAATGATGACTTAATTTGGGATGAAATGGCTG
TTTCATCAGACATTGCAACTGAAGATTTAAAAGAACTTGCAGAAGGGATG
GTGGCTTTACAAGATGACCAAAGAGGTTTGTGGAGCGCAGATGATATCAT
AAGCATCTTTGATGAAATCACTACAATTTCAATGGATTGGGATATCGAGA
ACATTGCTGTCTTTATGAAAGAATGTGGAGACACAATGTGTTGTGAAGTG
TTGGGAAATAAAGCTATCAATGGANGTTAGATGAGGAGCTATacgaagaa
aaatttgaaagaggTCGAGGAACAAATGACCGGCGGAGGACAACGTCCAA
CCATTAATCATTACATGAAATGTCGGAAAAGAAGAGTATCAGCAAGACAA
TTAGAAAAACGTCAACTGTCCATCGTCAAAACACCTGTCCACGAAAAAGG
AGACTTTGCACCACTACCTATCGAAGTCATGTTTCGGATTATCAAGTTTA
TCCCGTTGGTTTCATTGGGATCGCTGACGTTAACGTCAAAACAAATGCGA
GACATCATCATTATGTACGTTCACAGTCAAGAAGGAGCACGACGTGTCAT
TCCAGTCGTTCAAAATATTCCTGAACATTCGGACCTAGACTCTGACGAAT
ACAAATCAGAATCTAAGAGGTGTCACACTCACTACAAACAGCTAGGTGTC
ATGCTGAAACGGACAACGTGTCTTTTTTCAACAAGAGATCGATTGGCTGA
AGTTGGAAAGATTCTTGATCAGCTACGAGATTCGCACGTTAGAATATGCA
CCAAACTTGGAAGCGACCTTGCATACAGTTGCTATGGCATCTTTTTACAT
GCTTTCATAGCTGGATGGGAGGAtgatgaaaaatctaaatcctTTCAAGC
AATCAAAGGTGCATCTTTATTAGAAGAAAGAATTGGATACTTAATGAAGT
CAAAGCCTGGGACCATGCCAGGTTATGAAAGATACATCCGAGTTTTCTGC
CGAGAAATCTTCCTCAACAAAGCAAGCAAAACTGAAAAAGGATTTTGGAT
GGCACAGATTTTGAAACCATATCCCATTTTCTTTCAAGCAAGACTTCTCT
TCATTCTGTATGGTCCAACTGATCTTGAAAATGATGACTTAATTTGGGAT
GAAATGGCTGTTTCATCAGACATTGCAACTGAAGATTTAAAAGAACTTGC
AGAAGGGATGGTGGCTTTACAAGATGACCAAAGAGGTTTGTGGAGCGCAG
ATGATATCATAAGCATCTTTGATGAAATCACTACAATTTCAATGGATTGG
GATATCGAGAACATTGCTGTCTTTATGAAAGAATGTGGAGACACAATGTG
TTGTGAAGTGTTGGGAAATAAAGCTATCAATGGANGTTAGATGAGGAGCT
ATacgaagaaaaatttgaaagaggTCGAGGAACAAATGACCGGCGGAGGA
CAACGTCCAACCATTAATCATTACATGAAATGTCGGAAAAGAAGAGTATC
AGCAAGACAATTAGAAAAACGTCAACTGTCCATCGTCAAAACACCTGTCC
ACGAAAAAGGAGACTTTGCACCACTACCTATCGAAGTCATGTTTCGGATT
ATCAAGTTTATCCCGTTGGTTTCATTGGGATCGCTGACGTTAACGTCAAA
ACAAATGCGAGACATCATCATTATGTACGTTCACAGTCAAGAAGGAGCAC
GACGTGTCATTCCAGTCGTTCAAAATATTCCTGAACATTCGGACCTAGAC
TCTGACGAATACAAATCAGAATCTAAGAGGTGTCACACTCACTACAAACA
GCTAGGTGTCATGCTGAAACGGACAACGTGTCTTTTTTCAACAAGAGATC
GATTGGCTGAAGTTGGAAAGATTCTTGATCAGCTACGAGATTCGCACGTT
AGAATATGCACCAAACTTGGAAGCGACCTTGCATACAGTTGCTATGGCAT
CTTTTTACATGCTTTCATAGCTGGATGGGAGGAtgatgaaaaatctaaat
cctTTCAAGCAATCAAAGGTGCATCTTTATTAGAAGAAAGAATTGGATAC
TTAATGAAGTCAAAGCCTGGGACCATGCCAGGTTATGAAAGATACATCCG
AGTTTTCTGCCGAGAAATCTTCCTCAACAAAGCAAGCAAAACTGAAAAAG
GATTTTGGATGGCACAGATTTTGAAACCATATCCCATTTTCTTTCAAGCA
AGACTTCTCTTCATTCTGTATGGTCCAACTGATCTTGAAAATGATGACTT
AATTTGGGATGAAATGGCTGTTTCATCAGACATTGCAACTGAAGATTTAA
AAGAACTTGCAGAAGGGATGGTGGCTTTACAAGATGACCAAAGAGGTTTG
TGGAGCGCAGATGATATCATAAGCATCTTTGATGAAATCACTACAATTTC
AATGGATTGGGATATCGAGAACATTGCTGTCTTTATGAAAGAATGTGGAG
ACACAATGTGTTGTGAAGTGTTGGGAAATAAAGCTATCAATGGANGTTAG
ATGAGGAGCTATacgaagaaaaatttgaaagaggTCGAGGAACAAATGAC
CGGCGGAGGACAACGTCCAACCATTAATCATTACATGAAATGTCGGAAAA
GAAGAGTATCAGCAAGACAATTAGAAAAACGTCAACTGTCCATCGTCAAA
ACACCTGTCCACGAAAAAGGAGACTTTGCACCACTACCTATCGAAGTCAT
GTTTCGGATTATCAAGTTTATCCCGTTGGTTTCATTGGGATCGCTGACGT
TAACGTCAAAACAAATGCGAGACATCATCATTATGTACGTTCACAGTCAA
GAAGGAGCACGACGTGTCATTCCAGTCGTTCAAAATATTCCTGAACATTC
GGACCTAGACTCTGACGAATACAAATCAGAATCTAAGAGGTGTCACACTC
ACTACAAACAGCTAGGTGTCATGCTGAAACGGACAACGTGTCTTTTTTCA
ACAAGAGATCGATTGGCTGAAGTTGGAAAGATTCTTGATCAGCTACGAGA
TTCGCACGTTAGAATATGCACCAAACTTGGAAGCGACCTTGCATACAGTT
GCTATGGCATCTTTTTACATGCTTTCATAGCTGGATGGGAGGAtgatgaa
aaatctaaatcctTTCAAGCAATCAAAGGTGCATCTTTATTAGAAGAAAG
AATTGGATACTTAATGAAGTCAAAGCCTGGGACCATGCCAGGTTATGAAA
GATACATCCGAGTTTTCTGCCGAGAAATCTTCCTCAACAAAGCAAGCAAA
ACTGAAAAAGGATTTTGGATGGCACAGATTTTGAAACCATATCCCATTTT
CTTTCAAGCAAGACTTCTCTTCATTCTGTATGGTCCAACTGATCTTGAAA
ATGATGACTTAATTTGGGATGAAATGGCTGTTTCATCAGACATTGCAACT
GAAGATTTAAAAGAACTTGCAGAAGGGATGGTGGCTTTACAAGATGACCA
AAGAGGTTTGTGGAGCGCAGATGATATCATAAGCATCTTTGATGAAATCA
CTACAATTTCAATGGATTGGGATATCGAGAACATTGCTGTCTTTATGAAA
GAATGTGGAGACACAATGTGTTGTGAAGTGTTGGGAAATAAAGCTATCAA
TGGANGTTAGATGAGGAGCTATacgaagaaaaatttgaaagaggTCGAGG
AACAAATGACCGGCGGAGGACAACGTCCAACCATTAATCATTACATGAAA
TGTCGGAAAAGAAGAGTATCAGCAAGACAATTAGAAAAACGTCAACTGTC
CATCGTCAAAACACCTGTCCACGAAAAAGGAGACTTTGCACCACTACCTA
TCGAAGTCATGTTTCGGATTATCAAGTTTATCCCGTTGGTTTCATTGGGA
TCGCTGACGTTAACGTCAAAACAAATGCGAGACATCATCATTATGTACGT
TCACAGTCAAGAAGGAGCACGACGTGTCATTCCAGTCGTTCAAAATATTC
CTGAACATTCGGACCTAGACTCTGACGAATACAAATCAGAATCTAAGAGG
TGTCACACTCACTACAAACAGCTAGGTGTCATGCTGAAACGGACAACGTG
TCTTTTTTCAACAAGAGATCGATTGGCTGAAGTTGGAAAGATTCTTGATC
AGCTACGAGATTCGCACGTTAGAATATGCACCAAACTTGGAAGCGACCTT
GCATACAGTTGCTATGGCATCTTTTTACATGCTTTCATAGCTGGATGGGA
GGAtgatgaaaaatctaaatcctTTCAAGCAATCAAAGGTGCATCTTTAT
TAGAAGAAAGAATTGGATACTTAATGAAGTCAAAGCCTGGGACCATGCCA
GGTTATGAAAGATACATCCGAGTTTTCTGCCGAGAAATCTTCCTCAACAA
AGCAAGCAAAACTGAAAAAGGATTTTGGATGGCACAGATTTTGAAACCAT
ATCCCATTTTCTTTCAAGCAAGACTTCTCTTCATTCTGTATGGTCCAACT
GATCTTGAAAATGATGACTTAATTTGGGATGAAATGGCTGTTTCATCAGA
CATTGCAACTGAAGATTTAAAAGAACTTGCAGAAGGGATGGTGGCTTTAC
AAGATGACCAAAGAGGTTTGTGGAGCGCAGATGATATCATAAGCATCTTT
GATGAAATCACTACAATTTCAATGGATTGGGATATCGAGAACATTGCTGT
CTTTATGAAAGAATGTGGAGACACAATGTGTTGTGAAGTGTTGGGAAATA
AAGCTATCAATGGANGTTAGATGAGGAGCTATacgaagaaaaatttgaaa
gaggTCGAGGAACAAATGACCGGCGGAGGACAACGTCCAACCATTAATCA
TTACATGAAATGTCGGAAAAGAAGAGTATCAGCAAGACAATTAGAAAAAC
GTCAACTGTCCATCGTCAAAACACCTGTCCACGAAAAAGGAGACTTTGCA
CCACTACCTATCGAAGTCATGTTTCGGATTATCAAGTTTATCCCGTTGGT
TTCATTGGGATCGCTGACGTTAACGTCAAAACAAATGCGAGACATCATCA
TTATGTACGTTCACAGTCAAGAAGGAGCACGACGTGTCATTCCAGTCGTT
CAAAATATTCCTGAACATTCGGACCTAGACTCTGACGAATACAAATCAGA
ATCTAAGAGGTGTCACACTCACTACAAACAGCTAGGTGTCATGCTGAAAC
GGACAACGTGTCTTTTTTCAACAAGAGATCGATTGGCTGAAGTTGGAAAG
ATTCTTGATCAGCTACGAGATTCGCACGTTAGAATATGCACCAAACTTGG
AAGCGACCTTGCATACAGTTGCTATGGCATCTTTTTACATGCTTTCATAG
CTGGATGGGAGGAtgatgaaaaatctaaatcctTTCAAGCAATCAAAGGT
GCATCTTTATTAGAAGAAAGAATTGGATACTTAATGAAGTCAAAGCCTGG
GACCATGCCAGGTTATGAAAGATACATCCGAGTTTTCTGCCGAGAAATCT
TCCTCAACAAAGCAAGCAAAACTGAAAAAGGATTTTGGATGGCACAGATT
TTGAAACCATATCCCATTTTCTTTCAAGCAAGACTTCTCTTCATTCTGTA
TGGTCCAACTGATCTTGAAAATGATGACTTAATTTGGGATGAAATGGCTG
TTTCATCAGACATTGCAACTGAAGATTTAAAAGAACTTGCAGAAGGGATG
GTGGCTTTACAAGATGACCAAAGAGGTTTGTGGAGCGCAGATGATATCAT
AAGCATCTTTGATGAAATCACTACAATTTCAATGGATTGGGATATCGAGA
ACATTGCTGTCTTTATGAAAGAATGTGGAGACACAATGTGTTGTGAAGTG
TTGGGAAATAAAGCTATCAATGGANGTTAGATGAGGAGCTATacgaagaa
aaatttgaaagaggTCGAGGAACAAATGACCGGCGGAGGACAACGTCCAA
CCATTAATCATTACATGAAATGTCGGAAAAGAAGAGTATCAGCAAGACAA
TTAGAAAAACGTCAACTGTCCATCGTCAAAACACCTGTCCACGAAAAAGG
AGACTTTGCACCACTACCTATCGAAGTCATGTTTCGGATTATCAAGTTTA
TCCCGTTGGTTTCATTGGGATCGCTGACGTTAACGTCAAAACAAATGCGA
GACATCATCATTATGTACGTTCACAGTCAAGAAGGAGCACGACGTGTCAT
TCCAGTCGTTCAAAATATTCCTGAACATTCGGACCTAGACTCTGACGAAT
ACAAATCAGAATCTAAGAGGTGTCACACTCACTACAAACAGCTAGGTGTC
ATGCTGAAACGGACAACGTGTCTTTTTTCAACAAGAGATCGATTGGCTGA
AGTTGGAAAGATTCTTGATCAGCTACGAGATTCGCACGTTAGAATATGCA
CCAAACTTGGAAGCGACCTTGCATACAGTTGCTATGGCATCTTTTTACAT
GCTTTCATAGCTGGATGGGAGGAtgatgaaaaatctaaatcctTTCAAGC
AATCAAAGGTGCATCTTTATTAGAAGAAAGAATTGGATACTTAATGAAGT
CAAAGCCTGGGACCATGCCAGGTTATGAAAGATACATCCGAGTTTTCTGC
CGAGAAATCTTCCTCAACAAAGCAAGCAAAACTGAAAAAGGATTTTGGAT
GGCACAGATTTTGAAACCATATCCCATTTTCTTTCAAGCAAGACTTCTCT
TCATTCTGTATGGTCCAACTGATCTTGAAAATGATGACTTAATTTGGGAT
GAAATGGCTGTTTCATCAGACATTGCAACTGAAGATTTAAAAGAACTTGC
AGAAGGGATGGTGGCTTTACAAGATGACCAAAGAGGTTTGTGGAGCGCAG
ATGATATCATAAGCATCTTTGATGAAATCACTACAATTTCAATGGATTGG
GATATCGAGAACATTGCTGTCTTTATGAAAGAATGTGGAGACACAATGTG
TTGTGAAGTGTTGGGAAATAAAGCTATCAATGGANGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036956XLOC_036956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058665-exon-scaffold_312-1491911889:180205..180468TCONS_00058665-exon-scaffold_312-1491911889:180205..180468Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:180205..180468TCONS_00058665-exon-scaffold_312-1510915933:180205..180468Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:180205..180468TCONS_00058665-exon-scaffold_312-1575043694:180205..180468Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:181364..181548TCONS_00058665-exon-scaffold_312-1491911889:181364..181548Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:181364..181548TCONS_00058665-exon-scaffold_312-1510915933:181364..181548Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:181364..181548TCONS_00058665-exon-scaffold_312-1575043694:181364..181548Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:181855..182074TCONS_00058665-exon-scaffold_312-1491911889:181855..182074Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:181855..182074TCONS_00058665-exon-scaffold_312-1510915933:181855..182074Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:181855..182074TCONS_00058665-exon-scaffold_312-1575043694:181855..182074Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:182314..182390TCONS_00058665-exon-scaffold_312-1491911889:182314..182390Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:182314..182390TCONS_00058665-exon-scaffold_312-1510915933:182314..182390Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:182314..182390TCONS_00058665-exon-scaffold_312-1575043694:182314..182390Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:182561..182696TCONS_00058665-exon-scaffold_312-1491911889:182561..182696Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:182561..182696TCONS_00058665-exon-scaffold_312-1510915933:182561..182696Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:182561..182696TCONS_00058665-exon-scaffold_312-1575043694:182561..182696Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:183654..183726TCONS_00058665-exon-scaffold_312-1491911889:183654..183726Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:183654..183726TCONS_00058665-exon-scaffold_312-1510915933:183654..183726Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:183654..183726TCONS_00058665-exon-scaffold_312-1575043694:183654..183726Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:183874..184025TCONS_00058665-exon-scaffold_312-1491911889:183874..184025Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:183874..184025TCONS_00058665-exon-scaffold_312-1510915933:183874..184025Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:183874..184025TCONS_00058665-exon-scaffold_312-1575043694:183874..184025Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:184376..184525TCONS_00058665-exon-scaffold_312-1491911889:184376..184525Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:184376..184525TCONS_00058665-exon-scaffold_312-1510915933:184376..184525Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:184376..184525TCONS_00058665-exon-scaffold_312-1575043694:184376..184525Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1491911889:185016..185230TCONS_00058665-exon-scaffold_312-1491911889:185016..185230Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1510915933:185016..185230TCONS_00058665-exon-scaffold_312-1510915933:185016..185230Clytia hemisphaericaexon
TCONS_00058665-exon-scaffold_312-1575043694:185016..185230TCONS_00058665-exon-scaffold_312-1575043694:185016..185230Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058665-proteinTCONS_00058665-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:180205..185230 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11236	0.109569	0.12722	0.0933487	0.075762	0.0299341	0.0361142	0	0.023671	0.0293203	0	0.0374156	0	0	0.0159505	0.0342346	0.0632613	0.194522	0	0.0312467	0.29875	0.0794834	0.0322075	0.0585626	22.9209	27.7506	0.038517	0	0.187067	0.127061
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00058665 vs. Swiss-Prot (Human)
Match: FBX47 (F-box only protein 47 OS=Homo sapiens GN=FBXO47 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 7.490e-54
Identity = 98/318 (30.82%), Postives = 176/318 (55.35%), Query Frame = 3 
Query:  408 PVHEKGDFAPLPIEVMFRIIKFIPLVSLGSLTLTSKQMRDIIIMYVHSQEGARRVIPVVQNIPEHSDLDSDEYKSESKRCHTHYKQLGVMLKRTTCLFSTRDRLAEVGKILDQLRDSHVRICTKLGSDLAYSCYGIFLHAFIAGWEDDEKSKSFQAIKGASLLEERIGYLMKSKPGTMPGYERYIRVFCREIFLNK-ASKTEKGFWMAQILKPYPIFFQARLLFILYGPTDLENDDLIWDEMAVSSDIATEDLKELAEGMVALQDDQRGLWSADDIISIFDEITTISMDWDIENIAVFMKECGDTMCCEVLGNKAING 1358
            P+   G+F  LP+E+   I+K++ +  +  L++ SK +   II Y+ +  G++R++     + +  +L+  + + +S     HY+ LG++ KR T L  T++RL  + KIL ++       C      L  +CYG+FL    AGW++ E  + +  +   + L  +I   + SKPG+    E  IR+FCR + L+    +++  FW+ +ILKP+P+  QARLL+I++GP   ++  ++W EM +        LK LA+ +  L D     W+ADD+IS+ DE++ +  +W +EN A  +   G+ +C   + +KA+NG
Sbjct:   37 PISTFGNFKALPLEIFQIILKYLSVKDISMLSMVSKTVSQHIINYISTSSGSKRLL-----LQDFHNLELPDRRQDSAILE-HYRSLGLLFKRCTLLLPTKERLKYIHKILTEVSCFKFNGCAAPMQCLGLTCYGMFLQTLTAGWDELECHRVYNFLCELTNLCRKIQMAVCSKPGSAQKLELRIRLFCRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPISPQDGQVVWQEM-IEEPTDEFSLKGLADAIKLLYDASTKEWTADDVISLVDELSVVPREWLLENNARLLMLSGNNICFSFMASKAVNG 347
The following BLAST results are available for this feature:
BLAST of TCONS_00058665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX477.490e-5430.82F-box only protein 47 OS=Homo sapiens GN=FBXO47 PE... [more]
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