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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058673 ID=TCONS_00058673|Name=TCONS_00058673|organism=Clytia hemisphaerica|type=transcript|length=2134bpRun BLAST on NCBI protein sequence of TCONS_00058673-protein >TCONS_00058673-protein ID=TCONS_00058673-protein|Name=TCONS_00058673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=657bp MPAVKGEGMRGLQVFISDIRACKSKESEMKRINKELANIRSKFKGDKQLDRun BLAST on NCBI transcript from alignment at scaffold_312:161457..180137- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058673 ID=TCONS_00058673|Name=TCONS_00058673|organism=Clytia hemisphaerica|type=transcript|length=18681bp|location=Sequence derived from alignment at scaffold_312:161457..180137- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_312:161457..180137- >TCONS_00058673 ID=TCONS_00058673|Name=TCONS_00058673|organism=Clytia hemisphaerica|type=CDS|length=35478bp|location=Sequence derived from alignment at scaffold_312:161457..180137- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058673 vs. Swiss-Prot (Human)
Match: AP2A2 (AP-2 complex subunit alpha-2 OS=Homo sapiens GN=AP2A2 PE=1 SV=2) HSP 1 Score: 920.228 bits (2377), Expect = 0.000e+0 Identity = 444/608 (73.03%), Postives = 530/608 (87.17%), Query Frame = 1
Query: 163 MPAV-KGEGMRGLQVFISDIRACKSKESEMKRINKELANIRSKFKGDKQLDGYQKKKYVCKLLFIFLLGNDIDFGHMEAVNLLSSNKYSEKQIGYLFISVLVSANNELMKLIIQHVKNDLNSSNPIFVSLALQCIANIASPEMLEGVGPDVPKLLISGETADGVKQSASLCLLKLFRINSSVLPRTAEMASRICQMINDSNLGVVTAAASLILEFVQKFPDDYKGCVNLAINRLAKIVTS--SDLKDYTYYFVPAPWXXXXXXXXXXXYPTPDAAQLGKLTECLEHILNKAQEAPKSKKVQHSNSKNAVLFEAINLIIHLDSDQHLLIRACNQLGQYLTHRETNLRYLALESLCSLANTEFSAEAVRKHQETVINALKTERDVSVRQRAVDLLYVMCDSTNAIEIVAEMLTYLKQADFAIREELVLKIAILAEKYATDYSWYVDTILELIRVGGDFVGEEVWYRVIQVIINRDDIQGYAAKTVFEAIQAHDCHENMIKVGGYILGEFGNLIAGDPRSSPLVQFQLLHHKFPLANVPTKALLMSAYIKLINLFPEIKETIQNVLTSETNIRNADTEIQQRAVEYLQLSRIASQDVLATVLEEMPPFPER 1977
MPAV KG+GMRGL VFISDIR CKSKE+E+KRINKELANIRSKFKGDK LDGY KKKYVCKLLFIFLLG+DIDFGHMEAVNLLSSN+Y+EKQIGYLFISVLV++N+EL++LI +KNDL S NP F+ LAL CIA++ S EM E ++PK+L++G+T D VKQSA+LCLL+L+R + ++P + SR+ ++ND +LGVVTAA SLI QK P+++K V+LA++RL++IVTS +DL+DYTYYFVPAPWLSVKLL+LLQ YP PD A G+LTECLE ILNKAQE PKSKKVQHSN+KNAVLFEAI+LIIH DS+ +LL+RACNQLGQ+L HRETNLRYLALES+C+LA++EFS EAV+ H ETVINALKTERDVSVRQRAVDLLY MCD +NA +IVAEML+YL+ AD++IREE+VLK+AILAEKYA DY+WYVDTIL LIR+ GD+V EEVWYRVIQ++INRDD+QGYAAKTVFEA+QA CHEN++KVGGYILGEFGNLIAGDPRSSPL+QF LLH KF L +VPT+ALL+S YIK +NLFPE+K TIQ+VL S++ +RNAD E+QQRAVEYL+LS +AS D+LATVLEEMPPFPER
Sbjct: 1 MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIASVGSREMAEAFAGEIPKVLVAGDTMDSVKQSAALCLLRLYRTSPDLVP-MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAPQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFHLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKPTIQDVLRSDSQLRNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER 607 The following BLAST results are available for this feature:
BLAST of TCONS_00058673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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