TCONS_00059073 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059073
Unique Name	TCONS_00059073
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2703

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_316:172840..179359-
coding sequence from alignment at scaffold_316:172840..179359-

transcript sequence

>TCONS_00059073 ID=TCONS_00059073|Name=TCONS_00059073|organism=Clytia hemisphaerica|type=transcript|length=2703bp
GGAAATACTGGCGGGAAGGTATCTTTATTATTCAAGACATAAACACTAAA
GAATATGTAGGCTATGTCATGTCTTGGTTGCCCAAACTAGATGTAAAGga
tAAATataagtcaaaaataaaaactaaagtaGTACATTAAAAATGGTGCA
AATTACTGAAGATCTGATTCGAAAACGATCTGAGCATAACGATTGTGAAA
TCACAACACTCGAAGAAATTTCACTTCATCAATGTGACATTGAACGTTTG
GAATACATTGGGAAGTGGTGTCGAGACTTGAAAATCTTATACCTACAATC
TAACTTGATTCCCAAAATTGAGAACATTCACCAACTAAAGAAATTAGAGT
ATTTGAATTTGGCTTTGAATAATATCTTGGTTATTGAGAATCTGAAAGGG
TGCGAGTCGCTGAAGAAACTTGATCTAACTGTTAACTTCGTTGGTAAAAT
CACCTCTATCGAGTCACTCAAAGGAAATGAATTTTTACGGGACATGTATT
TAACGGGTAACCCTTGTACGGAATATGTGGGTTATCGAGACTATGTAATT
GCGACATTGCCTCAGTTAACCAGTTTAGATGGTACACCGGTATCCAAGTC
TGAACGCATAAAGGCGAACCAGAAATTGACCGAACTGAGGTGCGATATGT
TGAGACAAGAGAAAATATATATGGCTAAACAAGACAAAGAGCAAGAAATT
GAGGAAATCGAGACAAACGGCGTCAAAAAAGAGAAAATGACTGAAGAGGA
ATTCTGGTCAAAACCTTCGAAATTTACTCCTCAAAGTCGCGTTGAAGCTC
ACCATTTCATGGAAGAAAAACGGAAAGAAAAAGAGGAAACTAAGAAAACC
GATTTTCCCGATTTAAGAAATTCGTTACAAAGAACAATCCGATTTTTCAC
TGATGATGGAAGACCGTTGAATATTAACCAggataaaatcgattttgaat
ttcaagagAATGATGACTTCACGGGCTACGTTTTGGATGTGGCGTGTTAC
AAACATTTAGATACCTCACTGATCGATGTTGATTTGCAACCACACTACGT
TCGTGTTACAATGAAAGGGAAAATACTTCAACTCTCTCTCAACGAGGAAA
TCAGTCCAGATAAAAGTACAGCACAGCGATCGCAAACCAGCGGACACTTA
CTTATCAACATGCCTAAGCTAAAATATATACTTGAAGGTCGTTGCTCTGG
TTCTAGACGGCCGAAAACCGATTCTAAAGGCGCGAAAATGGGCAGTAACG
AGTTTCCGGATGCAACTAAAACTCGGGAAACGAAAACTATCGGTTGTGAA
TCTGGTAAAACGAATACCGACGACTTGCAAAAGTCGGTTGAACGACTTGA
AGTGACAGAGAACGAGAATAAAATTGATTATACAAACATTGTAAAAGAGG
AAAACGAAAAATCTAAAGATTTGAATTCGTTTATTTTCAATGGAAAGAAG
AGGAAAGGGGGATCaccaatgaaaaataataaaaatgcaATTAGCGAAAA
TCAGTATGACGAACATTTCGTTGACGATTTAGATGTACCACCTTTGGAGT
GAGTTTTGTATGCAGATGGTTTATTGGCCATTTcgcagtcgcaaagcgta
atgggtaatcaggaccactgcgcgctaatgacgacttactattggtccaa
agttttgaacatttttgaacatttttgcgtctaaccaacgggAGAACTGT
TATCGAGGCGCAATCATTCCTGATTACCCATAATCCATTTAGACTATGAA
ATGACCTATGGCTGCATAGatcatttcacagtcgaaatgaatcatgggta
attaAGATTGATTGTGCCTCTATGACGGCTTCCCGTTGGTGAGACGCAGA
AACAGCCAAAAATTTAGGCCAACAGAAAGTCGTTATCACAGCGTgatggt
cctgattacccatgattcatttcgactgtgaaatggtctATTCCAcattc
ttttcttcaaaaagtttcgATGGAAATATATAAAACTTATAAAActtcat
ataaaaatattttttaagcatgtttgattttaaatattttatttattttt
cagaaaaatattatttgggTGTATGTATTGTAAATACTAAAAAGAATACA
AAGTTTTTGAGACAAGTTCTATTATTTTTTAAGTAGGATACAGATAACAT
GATAATAATATATGACATGTAAGCATGGAAAAATTAGTCTTTGAGTGATA
TAAATTATACATTGTTATAAAAATTTACGTATTATAAAGTATTTTATGGA
ATCAGCAGTTTTCCCCAAACATAGATTAATTAGATAcccatttttttata
agaacaaactatataagaaaacaaggcttcaatggccaaaaagTTCAGCA
CAActtaagaaaaatttaaggctttgcggactaaAAAACACACAATTTGA
GTGATAGACAAAAATAgtcgaaaaaaaaagtgaaaataagtACATTCTAA
GGCctgaaacttaaaaagttaagaatgtcctaaggcttcaaaattttaaa
tgctcatataaaaaaacgtgttcacttaaaatttaaaatttatggTAGAC
AAAGATTTTAATATTAACACAGTAGagataaaattaaatatttgttTCAC
TGAGCCCTTTTCATGCTGGGTTAGCGCGACACAGCGTAAATATTTTTGTG
ATCATCTGAGTGATAATAACCAGGGGGTGGGTTCTTCTGATATGGTGGTA
GCT

Run BLAST on NCBI

protein sequence of TCONS_00059073-protein

>TCONS_00059073-protein ID=TCONS_00059073-protein|Name=TCONS_00059073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MVQITEDLIRKRSEHNDCEITTLEEISLHQCDIERLEYIGKWCRDLKILY
LQSNLIPKIENIHQLKKLEYLNLALNNILVIENLKGCESLKKLDLTVNFV
GKITSIESLKGNEFLRDMYLTGNPCTEYVGYRDYVIATLPQLTSLDGTPV
SKSERIKANQKLTELRCDMLRQEKIYMAKQDKEQEIEEIETNGVKKEKMT
EEEFWSKPSKFTPQSRVEAHHFMEEKRKEKEETKKTDFPDLRNSLQRTIR
FFTDDGRPLNINQDKIDFEFQENDDFTGYVLDVACYKHLDTSLIDVDLQP
HYVRVTMKGKILQLSLNEEISPDKSTAQRSQTSGHLLINMPKLKYILEGR
CSGSRRPKTDSKGAKMGSNEFPDATKTRETKTIGCESGKTNTDDLQKSVE
RLEVTENENKIDYTNIVKEENEKSKDLNSFIFNGKKRKGGSPMKNNKNAI
SENQYDEHFVDDLDVPPLE

Run BLAST on NCBI

transcript from alignment at scaffold_316:172840..179359-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059073 ID=TCONS_00059073|Name=TCONS_00059073|organism=Clytia hemisphaerica|type=transcript|length=6520bp|location=Sequence derived from alignment at scaffold_316:172840..179359- (Clytia hemisphaerica)
GGAAATACTGGCGGGAAGGTATCTTTATTATTCAAGACATAAACACTAAA
GAATATGTAGGCTATGTCATGTCTTGGTTGCCCAAACTAGATGTAAAGGT
AGGGCAACTGCACTGGCTGTGTGTCAAGCCGGGTCATCGAGACAAAGGTA
TTGCAACTTGTCTTATTGACCAAGTTTTGTGCTTTTTCAAGGAGAATAAT
TTCGAATCAGTTTATTTAAAAACTGAAACGTTTAGGGATAAAGCTATTTC
TTTGTACAAGACATTTGGGTTTAAGGAGTATAATATAATGTTATGAAGTT
GCACAGTAAATACTTTAGGACATAGGCCATTTCACAGTCGAAATGGATCA
TGGGTAATCAGGTCAATGGGAGTAGCTTAGAAAAGTTGACCAAGTGGTCT
AACGGGTCAGCGTCTTATACTACGAGTTCCTGGTTTGAGTCAACGATCTT
TCCATGTTCCATTCTGATCATAGATAGCCGAGCTGGTTAACCATAGACTC
CGGCAAAACAATCGGGAAACTTAACTATCTAAAAGCTCTACTCCAAGGTC
CCGATTAAACGTCTCCTCCGCTTTCCCTAAAATTTTGCTTAGGATATAAG
CATCCTACAAAGCATTTTTCAACCTAAACATCTCCGAGCTGGAGCGGAAG
CACCCTGCATTGGAAAGCTTTCCATTGTTATAGAGGACCTGTAATTAACA
GATTCTATTGATAGCTACTAATACATGTATTATTATACAAAATTTGGGAA
ATTTCTTTCAATATTGAATTTGATTTAGAGATTTTATGCCTTTATTGAAG
AAGGACCTACCTTGTACCTATAGATCTAAAGTCTGAGACGCTATATTTCC
TAGGAATAAAGATTTCGAGACGAACCTCGGATGATCTCGGAAGATCTGAG
ACGTATTCTGCTGAATTCGTGCCTAAATGAAATTTTACTTACGACCTTTA
GGATTGAGAAATTTCCCTTAGCTTAGTTATTGTTTTGAGGCCTTAAGTTT
TCTTACGTTCAAAATGTTTTAACGATGTTGGATACATTTCGTTATGTAAG
TAACGAGACTAAGTGGTTTTATAGAACTTTTTAAGGAGCGATGGCCAAGT
GGTCAAAGGCGTCAGCGTCTCAAACCAGGGATTCGTGGTTCGAATCCCCG
CTCCTTCCAATGTTCCGTTCAGTTCATAGATAGCCGAGCCGGCTGGCCGT
GGACCCCGTGAAAACAATCGAAAGACTGTCTAAAAAGTCCTAGATTACTG
GGCTATCCACGTAAAATATCGACTCTATCTATCTATCTATCTATCTATTT
GACTCAATGAGCTTTTCCAGAAAAAAAACCATATCCCCCTGTTAGGGATG
CCCAACACTTTGTGGCTAGAAATTCTGGAACCCTCTGGGTCTATTTCTAT
TGAGATATACGTTATACGTTTTTTTTTCTCGGGAAAAGTCCAATGCTTTT
TTTTTCTTTTTAGGATAAATATAAGTCAAAAATAAAAACTAAAGTAGTAC
ATTAAAAATGGTGCAAATTACTGAAGATCTGATTCGAAAACGATCTGAGC
ATAACGATTGTGAAATCACAACACTCGAAGAAATTTCACTTCATCAATGT
GACATTGAACGTTTGGAATACATTGGGAAGTGGTGTCGAGACTTGAAAAT
CTTATACCTACAATCTAACTTGATTCCCAAAATTGAGAACATTCACCAAC
TAAAGAAATTAGAGTATTTGAATTTGGCTTTGAATAATATCTTGGTTATT
GAGAATCTGAAAGGGTGCGAGTCGCTGAAGAAACTTGATCTAACTGTTAA
CTTCGTTGGTAAAATCACCTCTATCGAGTCACTCAAAGGAAATGAATTTT
TACGGGACATGTATTTAACGGGTAACCCTTGTACGGAATATGTGGGTTAT
CGAGACTATGTAATTGCGACATTGCCTCAGTTAACCAGTTTAGATGGTAC
ACCGGTATCCAAGTCTGAACGCATAAAGGCGAACCAGAAATTGACCGAAC
TGAGGTGCGATATGTTGAGACAAGAGAAAATATATATGGCTAAACAAGAC
AAAGAGCAAGAAATTGAGGAAATCGAGACAAACGGCGTCAAAAAAGAGGT
TTGTAGTTTTACGGATTATACTATACGCGCGTTCTGTGTAAAGTGTAAAG
ATGTCATGGGAGAATTGAAGACAGTCATACGATGGTCGAATCGTGAGGTG
TGGAGAGAGGCCATTGTATTTTTCGATCTTGGTCGATCTTAGATTTTCTT
GATGTCAGATATGGGGGAGGCATTATATTCCTTAAGAGATATGAACTCTA
TTTGTTGGCTGGTGGTAGCGCTTTTGCTCAGTCTCACCGGGAAGAGGCCC
CCCTGTAGTTTTCGTGATGGCATGATTGGCGTTTTTTCAAGTTCGTTATT
TTGTGATTCAAGATTTTAAAGTGTGTGAATGCCTGATCGGAGGAACCAAC
GTGATCAACGTGATCGTGATAGAAAGGAAATTTAACTCGTGATAATATGA
TTTGGAAATTTTTTTTTTGCGTGATGGCGTGATTTGAAAGATGACTGGTG
GGGGCCTCCGGACGGGTGTGGTTTTGGTGTCCACGTCGCTAATCGTCCCA
TCGAATGGCAGTCCGAGTAGGTCTGTAGGATGGATGGGATTTCCTTAACA
TAATCGTCANTATTTATAAAATTAATATTTATAAAATTAATATGTATACT
AGTGAGATGCTCTGACCGGCTACGCTAGCAAAGTAGAGTGTTAGTAATTG
TAATTGTAAATTTAACTCGTGATAATGTGATTTGGAAATTTTTTTCTTGA
TCGATCTTAGAAAATGACTGAAGAGGAATTCTGGTCAAAACCTTCGAAAT
TTACTCCTCAAAGTCGCGTTGAAGCTCACCATTTCATGGAAGAAAAACGG
AAAGAAAAAGAGGAAACTAAGAAAACCGATTTTCCCGATTTAAGAAATTC
GTTACAAAGAACAATCCGATTTTTCACTGATGATGGAAGACCGTTGAATA
TTAACCAGGATAAAATCGATTTTGAATTTCAAGAGAATGATGACTTCACG
GGCTACGTTTTGGATGTGGCGTGTTACAAACATTTAGGTGAGAAAAACCA
TTTCTAACTTCTAACTGCTGACTTTAATCGGATTAATTTTCGCGAAATTT
AATCTTGCGTTTTTTTTACGAATGCATTTCATTTTCGCGAAAATAAACTT
TCGAAATCGATTGAGACTCGATGAATCGCGAAATTAATAGCATGCAAAAT
TTTTGAGATCAGATCTTCAGCGTAAGATAAACTGTAAATAAGCTATTTTT
TGGTGTTTAAAGGGCGGTCATTTTCAGCAAATTGTTGGCTGGTTTGCGAA
GTTTAATTAATTTTTTTTGAAATTTTGTGGCAGTGAATATACCTTCCCCA
ACTCATGTCATGCGAGGGGAATTGGATAGACAGAAAAAGTATGTGTGGAC
GATAAGGGTCGGTTTTTTCACCTTTCACTTTTCCAAAGTCTCTCTAAGGG
TTACGAAAATCAGAAAATTAAAAGTTGCCCCTGTAAGGGTCAAAAAAGTC
TCGCAAGCTACAATCATGGACAAAGTATTTGAANGGATAAAATCGATTTT
GAATTTCAAGAGAATGATGACTTCACGGGCTACGTTTTGGATGTGGCGTG
TTACAAACATTTAGGTGAGAAAAACCCTTCTAACTTTTTTATTAATTTTC
GCGAAATTTAATCTTGCGTTTTTTTTACGAATGCATGTCATTTTCGCCAA
AATAAACTTTCGAAATCGATTGAGACTCGATGACTCGCAAAATTAAAAGC
ACGTAAAATTTTCGAGATCAAATCTTCAGCGTAAGATAAACACTGTAAAT
TAGCTTTTTTTAGCGTTTAAAAGGTCATTTTCAACAAATTATTGGCTGGT
TTGCGAAGTTTAATTAATTTTTTTGAAATTTTGAGGCTCCCGAAATTGAA
TCTTGTAAAAATTAATCCAATTAAAGTAATTTTTTTTGTTTGTCAGTAAC
ATAATAAAAACGTTAAAGTAATTTTTTTTTTGTCAGTAACATAATAAAAA
CGTTCGTTACAACTCGAGAAAGTTTTTACGTTTTTTTTTTTCACTTGGCA
AGTGAATATACCTTCCCCGGGTCAACTCATGTCATGTGAGGGGAATTGGA
TAGACAGAAAAAGTATGTGCGGACGATAAGGGTCGGTTTTTTCACCTTTC
ACTTTTCCAAAGTCTCTCTAAGAGTTACGAAAATCAGAAAAAAGACGATA
TCGGCTTTCCGAATTCTCCCCGAATGATTACCCATGATGCATTGCGCAAA
AAAATTCACGGGCGATATTGACATTCCGTGAATTTTTTGCGCAATGCATC
ATGGGTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCTATTCAAA
GTTGTCTCTGTAAGGGTCAAAAAAGTCTTGCAAGCTACAATCATAGACAA
AGTATTCAAGTTAAAGGGGATTTCCCTGCGAAATTTTTAACATCACAAAT
GATTTTTAAGTGCGTTAAAGTACGGTTGGAAAGTAGAGTTTTAACTCTGA
GTTTTAACATGAGACTTAAGCCTTAGGACATTAGGATCTCAGGATTTAAA
AGCTCAAATTTGCTCCAATAAGGCGTGGAGTATAGCCCAGAAGCCAACGA
ACCCCTCCAAAAACGAATTATTCAATGAAAGAAAGTGAAAGTGCTAAAAT
AGCAATTCTCGCCCGAACTTTAAATTCTGAAAAACATGAAAATATAAATA
TCTCAATATATTTTCATGATTGTAGTATGTAGTTCAAATGATCGTTTAGG
TTTGTTATATTTTTTATATCTTTGCAGATACCTCACTGATCGATGTTGAT
TTGCAACCACACTACGTTCGTGTTACAATGAAAGGGAAAATACTTCAACT
CTCTCTCAACGAGGAAATCAGTCCAGATAAAAGTACAGCACAGCGATCGC
AAACCAGCGGACACTTACTTATCAACATGCCTAAGCTAAAATATATACTT
GAAGGTCGTTGCTCTGGTTCTAGACGGCCGAAAACCGATTCTAAAGGCGC
GAAAATGGGCAGTAACGAGTTTCCGGATGCAACTAAAACTCGGGAAACGA
AAACTATCGGTTGTGAATCTGGTAAAACGAATACCGACGACTTGCAAAAG
TCGGTTGAACGACTTGAAGTGACAGAGAACGAGAATAAAATTGATTATAC
AAACATTGTAAAAGAGGAAAACGAAAAATCTAAAGATTTGAATTCGTTTA
TTTTCAATGGAAAGAAGAGGAAAGGGGGATCACCAATGAAAAATAATAAA
AATGCAATTAGCGAAAATCAGTATGACGAACATTTCGTTGACGATTTAGA
TGTACCACCTTTGGAGTGAGTTTTGTATGCAGATGGTTTATTGGCCATTT
CGCAGTCGCAAAGCGTAATGGGTAATCAGGACCACTGCGCGCTAATGACG
ACTTACTATTGGTCCAAAGTTTTGAACATTTTTGAACATTTTTGCGTCTA
ACCAACGGGAGAACTGTTATCGAGGCGCAATCATTCCTGATTACCCATAA
TCCATTTAGACTATGAAATGACCTATGGCTGCATAGATCATTTCACAGTC
GAAATGAATCATGGGTAATTAAGATTGATTGTGCCTCTATGACGGCTTCC
CGTTGGTGAGACGCAGAAACAGCCAAAAATTTAGGCCAACAGAAAGTCGT
TATCACAGCGTGATGGTCCTGATTACCCATGATTCATTTCGACTGTGAAA
TGGTCTATTCCACATTCTTTTCTTCAAAAAGTTTCGATGGAAATATATAA
AACTTATAAAACTTCATATAAAAATATTTTTTAAGCATGTTTGATTTTAA
ATATTTTATTTATTTTTCAGAAAAATATTATTTGGGTGTATGTATTGTAA
ATACTAAAAAGAATACAAAGTTTTTGAGACAAGTTCTATTATTTTTTAAG
TAGGATACAGATAACATGATAATAATATATGACATGTAAGCATGGAAAAA
TTAGTCTTTGAGTGATATAAATTATACATTGTTATAAAAATTTACGTATT
ATAAAGTATTTTATGGAATCAGCAGTTTTCCCCAAACATAGATTAATTAG
ATACCCATTTTTTTATAAGAACAAACTATATAAGAAAACAAGGCTTCAAT
GGCCAAAAAGTTCAGCACAACTTAAGAAAAATTTAAGGCTTTGCGGACTA
AAAAACACACAATTTGAGTGATAGACAAAAATAGTCGAAAAAAAAAGTGA
AAATAAGTACATTCTAAGGCCTGAAACTTAAAAAGTTAAGAATGTCCTAA
GGCTTCAAAATTTTAAATGCTCATATAAAAAAACGTGTTCACTTAAAATT
TAAAATTTATGGTAGACAAAGATTTTAATATTAACACAGTAGAGATAAAA
TTAAATATTTGTTTCACTGAGCCCTTTTCATGCTGGGTTAGCGCGACACA
GCGTAAATATTTTTGTGATCATCTGAGTGATAATAACCAGGGGGTGGGTT
CTTCTGATATGGTGGTAGCT

Coding sequence (CDS) from alignment at scaffold_316:172840..179359-

>TCONS_00059073 ID=TCONS_00059073|Name=TCONS_00059073|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at scaffold_316:172840..179359- (Clytia hemisphaerica)
ATACCTCACTGATCGATGTTGATTTGCAACCACACTACGTTCGTGTTACA
ATGAAAGGGAAAATACTTCAACTCTCTCTCAACGAGGAAATCAGTCCAGA
TAAAAGTACAGCACAGCGATCGCAAACCAGCGGACACTTACTTATCAACA
TGCCTAAGCTAAAATATATACTTGAAGGTCGTTGCTCTGGTTCTAGACGG
CCGAAAACCGATTCTAAAGGCGCGAAAATGGGCAGTAACGAGTTTCCGGA
TGCAACTAAAACTCGGGAAACGAAAACTATCGGTTGTGAATCTGGTAAAA
CGAATACCGACGACTTGCAAAAGTCGGTTGAACGACTTGAAGTGACAGAG
AACGAGAATAAAATTGATTATACAAACATTGTAAAAGAGGAAAACGAAAA
ATCTAAAGATTTGAATTCGTTTATTTTCAATGGAAAGAAGAGGAAAGGGG
GATCACCAATGAAAAATAATAAAAATGCAATTAGCGAAAATCAGTATGAC
GAACATTTCGTTGACGATTTAGATGTACCACCTTTGGAGTGAAAAATGAC
TGAAGAGGAATTCTGGTCAAAACCTTCGAAATTTACTCCTCAAAGTCGCG
TTGAAGCTCACCATTTCATGGAAGAAAAACGGAAAGAAAAAGAGGAAACT
AAGAAAACCGATTTTCCCGATTTAAGAAATTCGTTACAAAGAACAATCCG
ATTTTTCACTGATGATGGAAGACCGTTGAATATTAACCAGGATAAAATCG
ATTTTGAATTTCAAGAGAATGATGACTTCACGGGCTACGTTTTGGATGTG
GCGTGTTACAAACATTTAGATGGTGCAAATTACTGAAGATCTGATTCGAA
AACGATCTGAGCATAACGATTGTGAAATCACAACACTCGAAGAAATTTCA
CTTCATCAATGTGACATTGAACGTTTGGAATACATTGGGAAGTGGTGTCG
AGACTTGAAAATCTTATACCTACAATCTAACTTGATTCCCAAAATTGAGA
ACATTCACCAACTAAAGAAATTAGAGTATTTGAATTTGGCTTTGAATAAT
ATCTTGGTTATTGAGAATCTGAAAGGGTGCGAGTCGCTGAAGAAACTTGA
TCTAACTGTTAACTTCGTTGGTAAAATCACCTCTATCGAGTCACTCAAAG
GAAATGAATTTTTACGGGACATGTATTTAACGGGTAACCCTTGTACGGAA
TATGTGGGTTATCGAGACTATGTAATTGCGACATTGCCTCAGTTAACCAG
TTTAGATGGTACACCGGTATCCAAGTCTGAACGCATAAAGGCGAACCAGA
AATTGACCGAACTGAGGTGCGATATGTTGAGACAAGAGAAAATATATATG
GCTAAACAAGACAAAGAGCAAGAAATTGAGGAAATCGAGACAAACGGCGT
CAAAAAAGAGATACCTCACTGATCGATGTTGATTTGCAACCACACTACGT
TCGTGTTACAATGAAAGGGAAAATACTTCAACTCTCTCTCAACGAGGAAA
TCAGTCCAGATAAAAGTACAGCACAGCGATCGCAAACCAGCGGACACTTA
CTTATCAACATGCCTAAGCTAAAATATATACTTGAAGGTCGTTGCTCTGG
TTCTAGACGGCCGAAAACCGATTCTAAAGGCGCGAAAATGGGCAGTAACG
AGTTTCCGGATGCAACTAAAACTCGGGAAACGAAAACTATCGGTTGTGAA
TCTGGTAAAACGAATACCGACGACTTGCAAAAGTCGGTTGAACGACTTGA
AGTGACAGAGAACGAGAATAAAATTGATTATACAAACATTGTAAAAGAGG
AAAACGAAAAATCTAAAGATTTGAATTCGTTTATTTTCAATGGAAAGAAG
AGGAAAGGGGGATCACCAATGAAAAATAATAAAAATGCAATTAGCGAAAA
TCAGTATGACGAACATTTCGTTGACGATTTAGATGTACCACCTTTGGAGT
GAAAAATGACTGAAGAGGAATTCTGGTCAAAACCTTCGAAATTTACTCCT
CAAAGTCGCGTTGAAGCTCACCATTTCATGGAAGAAAAACGGAAAGAAAA
AGAGGAAACTAAGAAAACCGATTTTCCCGATTTAAGAAATTCGTTACAAA
GAACAATCCGATTTTTCACTGATGATGGAAGACCGTTGAATATTAACCAG
GATAAAATCGATTTTGAATTTCAAGAGAATGATGACTTCACGGGCTACGT
TTTGGATGTGGCGTGTTACAAACATTTAGATGGTGCAAATTACTGAAGAT
CTGATTCGAAAACGATCTGAGCATAACGATTGTGAAATCACAACACTCGA
AGAAATTTCACTTCATCAATGTGACATTGAACGTTTGGAATACATTGGGA
AGTGGTGTCGAGACTTGAAAATCTTATACCTACAATCTAACTTGATTCCC
AAAATTGAGAACATTCACCAACTAAAGAAATTAGAGTATTTGAATTTGGC
TTTGAATAATATCTTGGTTATTGAGAATCTGAAAGGGTGCGAGTCGCTGA
AGAAACTTGATCTAACTGTTAACTTCGTTGGTAAAATCACCTCTATCGAG
TCACTCAAAGGAAATGAATTTTTACGGGACATGTATTTAACGGGTAACCC
TTGTACGGAATATGTGGGTTATCGAGACTATGTAATTGCGACATTGCCTC
AGTTAACCAGTTTAGATGGTACACCGGTATCCAAGTCTGAACGCATAAAG
GCGAACCAGAAATTGACCGAACTGAGGTGCGATATGTTGAGACAAGAGAA
AATATATATGGCTAAACAAGACAAAGAGCAAGAAATTGAGGAAATCGAGA
CAAACGGCGTCAAAAAAGAGATACCTCACTGATCGATGTTGATTTGCAAC
CACACTACGTTCGTGTTACAATGAAAGGGAAAATACTTCAACTCTCTCTC
AACGAGGAAATCAGTCCAGATAAAAGTACAGCACAGCGATCGCAAACCAG
CGGACACTTACTTATCAACATGCCTAAGCTAAAATATATACTTGAAGGTC
GTTGCTCTGGTTCTAGACGGCCGAAAACCGATTCTAAAGGCGCGAAAATG
GGCAGTAACGAGTTTCCGGATGCAACTAAAACTCGGGAAACGAAAACTAT
CGGTTGTGAATCTGGTAAAACGAATACCGACGACTTGCAAAAGTCGGTTG
AACGACTTGAAGTGACAGAGAACGAGAATAAAATTGATTATACAAACATT
GTAAAAGAGGAAAACGAAAAATCTAAAGATTTGAATTCGTTTATTTTCAA
TGGAAAGAAGAGGAAAGGGGGATCACCAATGAAAAATAATAAAAATGCAA
TTAGCGAAAATCAGTATGACGAACATTTCGTTGACGATTTAGATGTACCA
CCTTTGGAGTGAAAAATGACTGAAGAGGAATTCTGGTCAAAACCTTCGAA
ATTTACTCCTCAAAGTCGCGTTGAAGCTCACCATTTCATGGAAGAAAAAC
GGAAAGAAAAAGAGGAAACTAAGAAAACCGATTTTCCCGATTTAAGAAAT
TCGTTACAAAGAACAATCCGATTTTTCACTGATGATGGAAGACCGTTGAA
TATTAACCAGGATAAAATCGATTTTGAATTTCAAGAGAATGATGACTTCA
CGGGCTACGTTTTGGATGTGGCGTGTTACAAACATTTAGATGGTGCAAAT
TACTGAAGATCTGATTCGAAAACGATCTGAGCATAACGATTGTGAAATCA
CAACACTCGAAGAAATTTCACTTCATCAATGTGACATTGAACGTTTGGAA
TACATTGGGAAGTGGTGTCGAGACTTGAAAATCTTATACCTACAATCTAA
CTTGATTCCCAAAATTGAGAACATTCACCAACTAAAGAAATTAGAGTATT
TGAATTTGGCTTTGAATAATATCTTGGTTATTGAGAATCTGAAAGGGTGC
GAGTCGCTGAAGAAACTTGATCTAACTGTTAACTTCGTTGGTAAAATCAC
CTCTATCGAGTCACTCAAAGGAAATGAATTTTTACGGGACATGTATTTAA
CGGGTAACCCTTGTACGGAATATGTGGGTTATCGAGACTATGTAATTGCG
ACATTGCCTCAGTTAACCAGTTTAGATGGTACACCGGTATCCAAGTCTGA
ACGCATAAAGGCGAACCAGAAATTGACCGAACTGAGGTGCGATATGTTGA
GACAAGAGAAAATATATATGGCTAAACAAGACAAAGAGCAAGAAATTGAG
GAAATCGAGACAAACGGCGTCAAAAAAGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037202	XLOC_037202	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059073-protein	TCONS_00059073-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059073-exon-scaffold_316-1575043694:179262..179359	TCONS_00059073-exon-scaffold_316-1575043694:179262..179359	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1575043694:177262..177896	TCONS_00059073-exon-scaffold_316-1575043694:177262..177896	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1575043694:176273..176549	TCONS_00059073-exon-scaffold_316-1575043694:176273..176549	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1575043694:172840..174532	TCONS_00059073-exon-scaffold_316-1575043694:172840..174532	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1510915933:179262..179359	TCONS_00059073-exon-scaffold_316-1510915933:179262..179359	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1510915933:177262..177896	TCONS_00059073-exon-scaffold_316-1510915933:177262..177896	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1510915933:176273..176549	TCONS_00059073-exon-scaffold_316-1510915933:176273..176549	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1510915933:172840..174532	TCONS_00059073-exon-scaffold_316-1510915933:172840..174532	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1491911889:179262..179359	TCONS_00059073-exon-scaffold_316-1491911889:179262..179359	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1491911889:177262..177896	TCONS_00059073-exon-scaffold_316-1491911889:177262..177896	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1491911889:176273..176549	TCONS_00059073-exon-scaffold_316-1491911889:176273..176549	Clytia hemisphaerica	exon
TCONS_00059073-exon-scaffold_316-1491911889:172840..174532	TCONS_00059073-exon-scaffold_316-1491911889:172840..174532	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_316	supercontig	scaffold_316:172840..179359 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.17691	6.04026	7.18264	8.99026	6.92906	4.62761	5.09195	5.31201	2.67944	3.62344	2.62689	2.30034	2.34534	1.90154	3.36083	3.5051	3.91632	4.67438	1.28533	1.53093	2.6963	2.51404	10.0884	9.35138	6.54411	7.05825	4.00079	3.0815	7.57602	7.87936

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003603	U2A'_phosphoprotein32A_C
IPR032675	L_dom-like
IPR008978	HSP20-like_chaperone
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00059073 vs. Swiss-Prot (Human)
Match: TILB (Protein tilB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 1.201e-63
Identity = 109/174 (62.64%), Postives = 138/174 (79.31%), Query Frame = 2

Query:  143 MVQITEDLIRKRSEHNDCEITTLEEISLHQCDIERLEYIGKWCRDLKILYLQSNLIPKIENIHQLKKLEYLNLALNNILVIENLKGCESLKKLDLTVNFVGKITSIESLKGNEFLRDMYLTGNPCTEYVGYRDYVIATLPQLTSLDGTPVSKSERIKANQKLTELRCDMLRQEK 664
            M  ITEDLIR+ +EHNDC I +LEE+SLHQ +IERLE+I KWCRDLKILYLQ+NLI KIEN+ +LKKLEYLNLALNNI  IENL+GCE L KLDLTVNF+G+++SI++L+ N  L++++L GNPC  +  YR++V+ATLPQL  LDG  +  SERIKA Q  + +   +  QEK
Sbjct:    1 MGWITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKIENVSKLKKLEYLNLALNNIEKIENLEGCEELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVATLPQLKWLDGKEIEPSERIKALQDYSVIEPQIREQEK 174

The following BLAST results are available for this feature:

BLAST of TCONS_00059073 vs. Swiss-Prot (Human)

BLAST of TCONS_00059073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TILB	1.201e-63	62.64	Protein tilB homolog OS=Homo sapiens GN=LRRC6 PE=1...	[more]

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TCONS_00059073 (transcript) - C. hemisphaerica